- Centre for Advancement of Teaching
- Centre for Atypical Neurodevelopment
- Centre for Elite Performance Expertise and Training (CEPET): Application University Research Centre
- Centre for Language Technology
- Macquarie University
- Access Macquarie Limited
- ARC Centre for Ultrahigh bandwidth Devices for Optical Systems (CUDOS)
- ARC Centre of Excellence for Core to Crust Fluid Systems (incorporation ARC National Key Centre for Geochemical evolution and Metallogeny of Continents (GEMOC))
- ARC Centre of Excellence for Engineered Quantum Systems (EQuS)
- ARC Centre of Excellence for Nanoscale BioPhotonics (CNBP)
- ARC Industrial Transformation Training Centre - ARC Training Centre for Fruit Fly Biosecurity (ITTC)
- ARC Industrial Transformation Training Centre - ARC Training Centre for Molecular Technology in the Food Industry (ITTC)
- ARC Science of Learning Research Centre
- Centre for Agency, Values and Ethics (CAVE)
- Centre for Emotional Health (CEH)
- Centre for Language Sciences (CLaS)
- Centre in Astronomy, Astrophysics & Astrophotonics
- Faculty of Arts
- Australian Centre for Ancient Numismatic Studies (ACANS)
- Centre for Applied History
- Centre for Environmental Law (CEL)
- Centre for Media History (CMH)
- Department of Ancient History
- Department of Anthropology
- Department of English
- Department of Geography and Planning
- Department of History and Archaeology
- Department of Indigenous Studies
- Department of International Studies Languages and Cultures
- Department of Media, Communications, Creative Arts, Language and Literature
- Department of Media, Music, Communication and Cultural Studies
- Department of Modern History, Politics and International Relations
- Department of Philosophy
- Department of Security Studies and Criminology
- Department of Sociology
- Macquarie Law School
- Macquarie School of Education
- Macquarie School of Social Sciences
- Faculty of Medicine, Health and Human Sciences
- Australian Institute of Health Innovation
- Centre for Ageing,Cognition,and Wellbeing
- Dementia Research Centre
- Department of Biomedical Sciences
- Department of Clinical Medicine
- Department of Cognitive Science
- Department of Health Professions
- Department of Health Systems and Populations
- Department of Linguistics
- Department of Psychology
- Faculty of Medicine Programs
- Macquarie University Centre for Motor Neuron Disease Research
- Macquarie University Centre for Reading
- Macquarie University Clinical Associates
- Macquarie University Hearing (MU Hearing)
- Mindspot Virtual Clinic
- Faculty of Science and Engineering
- Applied BioSciences
- Australian Astronomical Optics
- Australian Proteome Analysis Facility (APAF)
- Biomolecular Discovery Research Centre
- Centre for Electromagnetic and Antenna Engineering (CELANE)
- Centre of Excellence in Bioinformatics
- Department of Biological Sciences
- Department of Brain Behaviour and Evolution
- Department of Chiropractic
- Department of Computing
- Department of Earth and Environmental Sciences
- Department of Mathematics and Statistics
- Department of Molecular Sciences
- Department of Physics and Astronomy
- School of Engineering
- Hearing CRC
- Macquarie Business School
- Centre for Applied Finance Research
- Centre for Risk Analytics
- Centre for Workforce Futures
- Department of Accounting and Corporate Governance
- Department of Actuarial Studies and Business Analytics
- Department of Applied Finance
- Department of Economics
- Department of Management
- Department of Marketing
- Macquarie Graduate School of Management
- Macquarie University Centre for the Health Economy
- Macquarie University Administration Unit
- Macquarie University BioFocus Research Centre
- Macquarie University Clinical Associates (MUCA)
- Macquarie University Hospital
- Macquarie University International College
- Macquarie University Marine Research Centre
- Macquarie University Research Centre in Quantum Science and Technology
- Macquarie University Special Education Centre (MUSEC)
- MQ Centre for Energy and Environmental Contaminants
- MQ Photonics Research Centre
- NHMRC Centre of Research Excellence in Mental Health and Substance Abuse
- Risk Frontiers (formerly Natural Hazards Research Centre)
- RoZetta Institute
- Perception in Action Research Centre