- Macquarie University
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- ARC Centre for Ultrahigh bandwidth Devices for Optical Systems (CUDOS)
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- ARC Centre of Excellence for Engineered Quantum Systems (EQuS)
- ARC Centre of Excellence for Nanoscale BioPhotonics (CNBP)
- ARC Centre of Excellence in Cognition and its Disorders (CCD)
- ARC Industrial Transformation Training Centre - ARC Training Centre for Fruit Fly Biosecurity (ITTC)
- ARC Industrial Transformation Training Centre - ARC Training Centre for Molecular Technology in the Food Industry (ITTC)
- ARC Science of Learning Research Centre
- Capital Markets Cooperative Research Centre (CMCRC)
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- Macquarie University BioFocus Research Centre
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- Macquarie University Marine Research Centre
- Macquarie University Research Centre in Quantum Science and Technology
- Macquarie University Special Education Centre (MUSEC)
- MQ Centre for Energy and Environmental Contaminants
- MQ Photonics Research Centre
- NHMRC Centre of Research Excellence in Mental Health and Substance Abuse
- Risk Frontiers (formerly Natural Hazards Research Centre)
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