Australian Proteome Analysis Facility (APAF)

Research Output

Research Output per year

1998 2020

• 139 Article
• 12 Meeting abstract
• 9 Review article
• 6 Chapter
• 9 More
  • 2 Abstract
  • 2 Poster
  • 1 Entry for encyclopedia/dictionary/reference book
  • 1 Comment/opinion
  • 1 Editorial
  • 1 Letter
  • 1 Short survey

Research Output per year

Research Output per year

Search results

• 2020

  Amyloid-beta peptide neurotoxicity in human neuronal cells is associated with modulation of insulin-like growth factor transport, lysosomal machinery and extracellular matrix receptor interactions

  Deng, L., Haynes, P. A., Wu, Y., Amirkhani, A., Kamath, K. S., Wu, J. X., Pushpitha, K., Gupta, V., Graham, S., Gupta, V. K. & Mirzaei, M., Nov 2020, In : Neural Regeneration Research. 15, 11, p. 2131-2142 12 p.

  Research output: Contribution to journal › Article

  Open Access

  File

  • Amyloid beta-Peptides
  • Somatomedins
  • Alzheimer Disease
  • Neurons
  • Insulin-Like Growth Factor Binding Proteins
  5 Downloads (Pure)

• Capping dietary starch: protein ratios in moderately reduced crude protein, wheat-based diets showed promise but further reductions generated inferior growth performance in broiler chickens

  Greenhalgh, S., McInerney, B. V., McQuade, L. R., Chrystal, P. V., Khoddami, A., Zhuang, M. A. M., Liu, S. Y. & Selle, P. H., Jun 2020, In : Animal nutrition. 6, 2, p. 168-178 11 p.

  Research output: Contribution to journal › Article

  Open Access

  File

  • dietary carbohydrate
  • Dietary Proteins
  • Starch
  • Triticum
  • Chickens
  2 Citations (Scopus)

  11 Downloads (Pure)

• Caveolin-1 ablation imparts partial protection against inner retinal injury in experimental glaucoma and reduces apoptotic activation

  Abbasi, M., Gupta, V. K., Chitranshi, N., Gupta, V. B., Mirzaei, M., Dheer, Y., Garthwaite, L., Zaw, T., Parton, R. G., You, Y. & Graham, S. L., Sep 2020, In : Molecular Neurobiology. 57, 9, p. 3759-3784 26 p.

  Research output: Contribution to journal › Article

  • Caveolin 1
  • Glaucoma
  • Intraocular Pressure
  • Wounds and Injuries
  • Ganglia
  1 Citation (Scopus)

• Complement pathway in Alzheimer's pathology and retinal neurodegenerative disorders: the road ahead

  Mirzaei, M., Deng, L., Gupta, V. B., Graham, S. & Gupta, V., 1 Feb 2020, In : Neural Regeneration Research. 15, 2, p. 257-258 2 p.

  Research output: Contribution to journal › Review article

  Open Access

  File
  3 Citations (Scopus)

  11 Downloads (Pure)

• Composition and characterisation of kafirin, the dominant protein fraction in grain sorghum

  Selle, P. H., McInerney, B. V., McQuade, L. R., Khoddami, A., Chrystal, P. V., Hughes, R. J. & Liu, S. Y., 27 Feb 2020, In : Animal Production Science. 60, 9, p. 1163-1172 10 p.

  Research output: Contribution to journal › Article

  • kafirins
  • Sorghum
  • grain sorghum
  • Proteins
  • proteins

• ELF5 modulates the estrogen receptor cistrome in breast cancer

  Piggin, C. L., Roden, D. L., Law, A. M. K., Molloy, M. P., Krisp, C., Swarbrick, A., Naylor, M. J., Kalyuga, M., Kaplan, W., Oakes, S. R., Gallego-Ortega, D., Clark, S. J., Carroll, J. S., Bartonicek, N. & Ormandy, C. J., 2 Jan 2020, In : PLoS Genetics. 16, 1, p. 1-24 24 p., e1008531.

  Research output: Contribution to journal › Article

  Open Access

  File

  • Estrogen Receptors
  • breast neoplasms
  • estrogens
  • gene expression
  • cancer
  3 Citations (Scopus)

  3 Downloads (Pure)

• Eukaryote-conserved methylarginine is absent in diplomonads and functionally compensated in Giardia

  Emery-Corbin, S. J., Hamey, J. J., Ansell, B. R. E., Balan, B., Tichkule, S., Stroehlein, A. J., Cooper, C., McInerney, B. V., Zadeh, S. H., Vuong, D., Crombie, A., Lacey, E., Davis, M. J., Wilkins, M. R., Bahlo, M., Svärd, S. G., Gasser, R. B. & Jex, A. R., Dec 2020, In : Molecular Biology and Evolution. 37, 12, p. 3525-3549 25 p.

  Research output: Contribution to journal › Article

  Open Access

  File

  • Diplomonadida
  • Giardia
  • methylation
  • eukaryote
  • Eukaryota
  1 Citation (Scopus)

• Evaluating bioanalytical capabilities of paper spray ionization for abiraterone drug quantification in patient plasma

  Bhatnagar, A., McKay, M. J., Arasaratnam, M., Crumbaker, M., Gurney, H. & Molloy, M. P., Oct 2020, In : Journal of Mass Spectrometry. 55, 10, p. 1-8 8 p., e4584.

  Research output: Contribution to journal › Article

  • Ionization
  • Plasmas
  • Pharmaceutical Preparations
  • Metabolites
  • Assays

• Evolving geographic diversity in SARS-CoV2 and in silico analysis of replicating enzyme 3CL^protargeting repurposed drug candidates

  Chitranshi, N., Gupta, V. K., Rajput, R., Godinez, A., Pushpitha, K., Shen, T., Mirzaei, M., You, Y., Basavarajappa, D., Gupta, V. & Graham, S. L., 9 Jul 2020, In : Journal of Translational Medicine. 18, 1, p. 1-15 15 p., 278.

  Research output: Contribution to journal › Article

  Open Access

  File

  • Drug Repositioning
  • Severe Acute Respiratory Syndrome
  • Computer Simulation
  • Genes
  • Enzymes
  4 Citations (Scopus)

  9 Downloads (Pure)

• Parallels between retinal and brain pathology and response to immunotherapy in old, late-stage Alzheimer's disease mouse models

  Doustar, J., Rentsendorj, A., Torbati, T., Regis, G. C., Fuchs, D-T., Sheyn, J., Mirzaei, N., Graham, S. L., Shah, P. K., Mastali, M., Van Eyk, J. E., Black, K. L., Gupta, V. K., Mirzaei, M., Koronyo, Y. & Koronyo-Hamaoui, M., Nov 2020, In : Aging Cell. 19, 11, p. 1-25 25 p., e13246.

  Research output: Contribution to journal › Article

  Open Access

  File

  • Immunotherapy
  • Alzheimer Disease
  • Pathology
  • Immunomodulation
  • Immunization
  1 Citation (Scopus)

  1 Downloads (Pure)

• PGRMC1 phosphorylation affects cell shape, motility, glycolysis, mitochondrial form and function, and tumor growth

  Thejer, B. M., Adhikary, P. P., Kaur, A., Teakel, S. L., Van Oosterum, A., Seth, I., Pajic, M., Hannan, K. M., Pavy, M., Poh, P., Jazayeri, J. A., Zaw, T., Pascovici, D., Ludescher, M., Pawlak, M., Cassano, J. C., Turnbull, L., Jazayeri, M., James, A. C., Coorey, C. P. & 11 others, Roberts, T. L., Kinder, S. J., Hannan, R. D., Patrick, E., Molloy, M. P., New, E. J., Fehm, T. N., Neubauer, H., Goldys, E. M., Weston, L. A. & Cahill, M. A., 3 Apr 2020, In : BMC Molecular and Cell Biology. 21, p. 1-24 24 p., 24.

  Research output: Contribution to journal › Article

  Open Access

  File

  • Cell Shape
  • Glycolysis
  • Progesterone Receptors
  • Cell Movement
  • Phosphorylation
  7 Citations (Scopus)

  3 Downloads (Pure)

• Presymptomatic Dutch-type hereditary cerebral amyloid angiopathy related blood metabolite alterations

  Chatterjee, P., Fagan, A. M., Xiong, C., McKay, M., Bhatnagar, A., Wu, Y., Singh, A. K., Taddei, K., Martins, I., Gardener, S. L., Molloy, M. P., Multhaup, G., Masters, C. L., Schofield, P. R., Wermer, M. J. H., van Buchem, M. A., Sohrabi, H., Martins, R. N. & Dominantly Inherited Alzheimer Network (DIAN), 9 Nov 2020, (Accepted/In press) In : Journal of Alzheimer's Disease. 20-1267.

  Research output: Contribution to journal › Article

• Probing the role of the chloroplasts in heavy metal tolerance and accumulation in Euglena gracilis

  Khatiwada, B., Hasan, M. T., Sun, A., Kamath, K. S., Mirzaei, M., Sunna, A. & Nevalainen, H., Jan 2020, In : Microorganisms. 8, 1, p. 1-18 18 p., 115.

  Research output: Contribution to journal › Article

  Open Access

  File

  • Euglena gracilis
  • Chloroplasts
  • Heavy Metals
  • Cadmium
  • Cytosol
  4 Citations (Scopus)

  9 Downloads (Pure)

• Proteogenomic analysis of Inhibitor of Differentiation 4 (ID4) in basal-like breast cancer

  Baker, L. A., Holliday, H., Roden, D., Krisp, C., Wu, S. Z., Junankar, S., Serandour, A. A., Mohammed, H., Nair, R., Sankaranarayanan, G., Law, A. M. K., McFarland, A., Simpson, P. T., Lakhani, S., Dodson, E., Selinger, C., Anderson, L., Samimi, G., Hacker, N. F., Lim, E. & 10 others, Ormandy, C. J., Naylor, M. J., Simpson, K., Nikolic, I., O'Toole, S., Kaplan, W., Cowley, M. J., Carroll, J. S., Molloy, M. & Swarbrick, A., 11 Jun 2020, In : Breast cancer research : BCR. 22, p. 1-18 18 p., 63.

  Research output: Contribution to journal › Article

  Open Access

  File

  • DNA Damage
  • Breast Neoplasms
  • DNA Repair
  • Ovarian Neoplasms
  • Chromatin
  1 Citation (Scopus)

  4 Downloads (Pure)

• Proteomic analysis of wheat contrasting genotypes reveals the interplay between primary metabolic and regulatory pathways in anthers under drought stress

  Mehri, N., Fotovat, R., Mirzaei, M., Fard, E. M., Parsamatin, P., Hasan, M. T., Wu, Y., Ghaffari, M. R. & Salekdeh, G. H., 30 Aug 2020, In : Journal of Proteomics. 226, p. 1-10 10 p., 103895.

  Research output: Contribution to journal › Article

  • Drought
  • Droughts
  • Metabolic Networks and Pathways
  • Proteomics
  • Triticum

• Proteomic and metabolomic analysis of desiccation tolerance in wheat young seedlings

  Koobaz, P., Reza Ghaffari, M., Heidari, M., Mirzaei, M., Ghanati, F., Amirkhani, A., Mortazavi, S. E., Moradi, F., Hajirezaei, M. R. & Salekdeh, G. H., Jan 2020, In : Plant Physiology and Biochemistry. 146, p. 349-362 14 p.

  Research output: Contribution to journal › Article

  • Desiccation
  • Metabolomics
  • metabolomics
  • desiccation (plant physiology)
  • Seedlings
  2 Citations (Scopus)

• Proteomic investigations into resistance in colorectal cancer

  Cantor, D., Cheruku, H., Westacott, J., Shin, J-S., Mohamedali, A. & Ahn, S. B., 2 Jan 2020, In : Expert Review of Proteomics. 17, 1, p. 49-65 17 p.

  Research output: Contribution to journal › Review article

  • Proteomics
  • Colorectal Neoplasms
  • Refining
  • Screening
  • Therapeutics
  1 Citation (Scopus)

• Proteomic response of Euglena gracilis to heavy metal exposure: identification of key proteins involved in heavy metal tolerance and accumulation

  Khatiwada, B., Hasan, M. T., Sun, A., Kamath, K. S., Mirzaei, M., Sunna, A. & Nevalainen, H., Jan 2020, In : Algal Research. 45, p. 1-11 11 p., 101764.

  Research output: Contribution to journal › Article

  • taxonomic keys
  • Euglena gracilis
  • metal tolerance
  • proteomics
  • heavy metals
  10 Citations (Scopus)

• Proteomic responses to drought vary widely among eight diverse genotypes of rice (Oryza sativa)

  Hamzelou, S., Pascovici, D., Kamath, K. S., Amirkhani, A., McKay, M., Mirzaei, M., Atwell, B. J. & Haynes, P. A., Jan 2020, In : International Journal of Molecular Sciences. 21, 1, 16 p., 363.

  Research output: Contribution to journal › Article

  Open Access

  File

  • drought
  • Drought
  • Droughts
  • rice
  • Proteomics
  4 Citations (Scopus)

  6 Downloads (Pure)

• PSMD11, PTPRM and PTPRB as novel biomarkers of pancreatic cancer progression

  Sahni, S., Krisp, C., Molloy, M. P., Nahm, C., Maloney, S., Gillson, J., Gill, A. J., Samra, J. & Mittal, A., Nov 2020, In : Biochimica et Biophysica Acta - General Subjects. 1864, 11, p. 1-6 6 p., 129682.

  Research output: Contribution to journal › Article

  • Biomarkers
  • Pancreatic Neoplasms
  • Adenocarcinoma
  • Plasmas
  • Blood Proteins

• Retinal proteomics of experimental glaucoma model reveal intraocular pressure-induced mediators of neurodegenerative changes

  Mirzaei, M., Gupta, V. K., Chitranshi, N., Deng, L., Pushpitha, K., Abbasi, M., Chick, J. M., Rajput, R., Wu, Y., McKay, M. J., Salekdeh, G. H., Gupta, V. B., Haynes, P. A. & Graham, S. L., Dec 2020, In : Journal of Cellular Biochemistry. 121, 12, p. 4931-4944 14 p.

  Research output: Contribution to journal › Article

  • Intraocular Pressure
  • Glaucoma
  • Proteomics
  • Theoretical Models
  • Rats
  1 Citation (Scopus)

• The prognostic role of inflammatory markers in patients with metastatic colorectal cancer treated with bevacizumab: a translational study [ASCENT]

  Clarke, S., Burge, M., Feeney, K., Gibbs, P., Jones, K., Marx, G., Molloy, M. P., Price, T., Reece, W. H. H., Segelov, E. & Tebbutt, N. C., 6 Mar 2020, In : PLoS ONE. 15, 3, p. 1-11 11 p., e0229900.

  Research output: Contribution to journal › Article

  Open Access

  File

  • Lymphocytes
  • colorectal neoplasms
  • Disease-Free Survival
  • Tumors
  • Colorectal Neoplasms
  3 Citations (Scopus)

  1 Downloads (Pure)

• Two of a kind: transmissible Schwann cell cancers in the endangered Tasmanian devil (Sarcophilus harrisii)

  Patchett, A. L., Coorens, T. H. H., Darby, J., Wilson, R., McKay, M. J., Kamath, K. S., Rubin, A., Wakefield, M., Mcintosh, L., Mangiola, S., Pye, R. J., Flies, A. S., Corcoran, L. M., Lyons, A. B., Woods, G. M., Murchison, E. P., Papenfuss, A. T. & Tovar, C., May 2020, In : Cellular and Molecular Life Sciences. 77, 9, p. 1847-1858 12 p.

  Research output: Contribution to journal › Article

  • Schwann Cells
  • Neoplasms
  • Immune Evasion
  • Cell Lineage
  • Proteome
  6 Citations (Scopus)

• Wild and cultivated species of rice have distinctive proteomic responses to drought

  Hamzelou, S., Kamath, K. S., Masoomi-Aladizgeh, F., Johnsen, M. M., Atwell, B. J. & Haynes, P. A., 1 Sep 2020, In : International Journal of Molecular Sciences. 21, 17, p. 1-21 21 p., 5980.

  Research output: Contribution to journal › Article

  Open Access

  File

  • drought
  • Drought
  • Droughts
  • rice
  • Proteomics

• Workflow for rapidly extracting biological insights from complex, multicondition proteomics experiments with WGCNA and PloGO2

  Wu, J. X., Pascovici, D., Wu, Y., Walker, A. K. & Mirzaei, M., 2 Jul 2020, In : Journal of Proteome Research. 19, 7, p. 2898-2906 9 p.

  Research output: Contribution to journal › Article

  • Workflow
  • Gene Regulatory Networks
  • Electric network analysis
  • Proteomics
  • Genes
  1 Citation (Scopus)
• 2019

  Abiotic stress responsive microRNome and proteome: how correlated are they?

  Gharechahi, J., Sharifi, G., Mirzaei, M., Zeinalabedini, M. & Hosseini Salekdeh, G., Sep 2019, In : Environmental and Experimental Botany. 165, p. 150-160 11 p.

  Research output: Contribution to journal › Review article

  • proteome
  • microRNA
  • abiotic stress
  • plant response
  • gene

• Amyloid β induces early changes in the ribosomal machinery, cytoskeletal organization and oxidative phosphorylation in retinal photoreceptor cells

  Deng, L., Pushpitha, K., Joseph, C., Gupta, V., Rajput, R., Chitranshi, N., Dheer, Y., Amirkhani, A., Kamath, K., Pascovici, D., Wu, J. X., Salekdeh, G. H., Haynes, P. A., Graham, S. L., Gupta, V. K. & Mirzaei, M., 22 Feb 2019, In : Frontiers in Molecular Neuroscience. 12, p. 1-14 14 p., 24.

  Research output: Contribution to journal › Article

  Open Access

  File

  • Vertebrate Photoreceptor Cells
  • Oxidative Phosphorylation
  • Amyloid
  • Photoreceptor Cells
  • Alzheimer Disease
  10 Citations (Scopus)

  16 Downloads (Pure)

• An external quality assurance trial to assess mass spectrometry protein testing facilities for identifying multiple human peptides

  Horan, M. P., Hoffmann, P., Briggs, M. T., Condina, M., Herbert, S., Ito, J., Rodger, A., McKay, M., Maltby, D., Crossett, B., Abudulai, L. N., Clarke, M. W. & Badrick, T., Oct 2019, In : Analytical and bioanalytical chemistry. 411, 25, p. 6575-6581 7 p.

  Research output: Contribution to journal › Article

  • Quality assurance
  • Mass spectrometry
  • Mass Spectrometry
  • Peptides
  • Testing

• A preliminary study of the anti-κ myeloma antigen monoclonal antibody KappaMab (MDX-1097) in pretreated patients with κ-restricted multiple myeloma

  Spencer, A., Walker, P., Asvadi, P., Campbell, D. H., Reed, K., Herbert, B. R., Breen, E. J., Copeman, M. C. & Dunn, R. D., 31 Jul 2019, In : Blood Cancer Journal. 9, 8, 5 p., 58.

  Research output: Contribution to journal › Letter

  Open Access

  File
  2 Downloads (Pure)

• Bioanalytical evaluation of dried plasma spots for monitoring of abiraterone and ∆(4)-abiraterone from cancer patients

  Bhatnagar, A., McKay, M. J., Thaysen-Andersen, M., Arasaratnam, M., Crumbaker, M., Gurney, H. & Molloy, M. P., 15 Sep 2019, In : Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences. 1126-1127, p. 1-9 9 p., 121741.

  Research output: Contribution to journal › Article

  • Plasmas
  • Monitoring
  • Neoplasms
  • Drug Monitoring
  • Castration
  3 Citations (Scopus)

• Biomacromolecules in bivalve shells with crossed lamellar architecture

  Agbaje, O. B. A., Thomas, D. E., Dominguez, J. G., Mclnerney, B. V., Kosnik, M. A. & Jacob, D. E., Mar 2019, In : Journal of Materials Science. 54, 6, p. 4952-4969 18 p.

  Research output: Contribution to journal › Article

  Open Access

  • Polysaccharides
  • Proteins
  • Chitin
  • Glycoproteins
  • Microstructure
  11 Citations (Scopus)

• Circulating cytokines predict immune-related toxicity in melanoma patients receiving anti-PD-1 based immunotherapy

  Lim, S. Y., Lee, J. H., Nur Gide, T., Menzies, A. M., Guminski, A., Carlino, M. S., Breen, E., Yang, J. Y. H., Ghazanfar, S., Kefford, R. F., Scolyer, R. A., Long, G. V. & Rizos, H., Mar 2019, In : Clinical Cancer Research. 25, 5, p. 1557-1563 7 p.

  Research output: Contribution to journal › Article

  • Immunotherapy
  • Melanoma
  • Cytokines
  • Confidence Intervals
  • Therapeutics
  54 Citations (Scopus)

• Clinically relevant post-translational modification analyses: maturing workflows and bioinformatics tools

  Pascovici, D., Wu, J. X., McKay, M. J., Joseph, C., Noor, Z., Kamath, K., Wu, Y., Ranganathan, S., Gupta, V. & Mirzaei, M., 1 Jan 2019, In : International Journal of Molecular Sciences. 20, 1, p. 1-30 30 p., 16.

  Research output: Contribution to journal › Review article

  Open Access

  File

  • Workflow
  • Post Translational Protein Processing
  • Bioinformatics
  • Computational Biology
  • Proteins
  9 Citations (Scopus)

  155 Downloads (Pure)

• Comparative proteomics investigation of central carbon metabolism in Euglena gracilis grown under predominantly phototrophic, mixotrophic and heterotrophic cultivations

  Hasan, M. T., Sun, A., Khatiwada, B., McQuade, L., Mirzaei, M., Te'o, J., Hobba, G., Sunna, A. & Nevalainen, H., Nov 2019, In : Algal Research. 43, p. 1-11 11 p., 101638.

  Research output: Contribution to journal › Article

  • Euglena gracilis
  • proteomics
  • metabolism
  • carbon
  • enzymes
  4 Citations (Scopus)

• Dynamic proteome response of different rice varieties to drought stress

  Hamzelou, S., Pascovici, D., Mirzaei, M., Amirkhani, A., McKay, M., Atwell, B. & Haynes, P., 2019.

  Research output: Contribution to conference › Poster

  • proteome
  • water stress
  • rice
  • proteins
  • peptides

• Evidence from the proteome for local adaptation to extreme heat in a widespread tree species

  Maher, T., Mirzaei, M., Pascovici, D., Wright, I. J., Haynes, P. A. & Gallagher, R. V., Mar 2019, In : Functional Ecology. 33, 3, p. 436-446 11 p.

  Research output: Contribution to journal › Article

  Open Access

  File

  • local adaptation
  • proteome
  • heat
  • protein
  • Eucalyptus grandis
  1 Citation (Scopus)

• Examining cellular responses to kinase drug inhibition through phosphoproteome mapping of substrates

  Bucio-Noble, D., Semaan, C. & Molloy, M. P., 2019, Systems chemical biology: methods and protocols. Ziegler, S. & Waldmann, H. (eds.). New York: Humana Press, p. 141-152 12 p. (Methods in Molecular Biology; vol. 1888).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Mass Spectrometry
  • Phosphotransferases
  • Phosphopeptides
  • Statistical Data Interpretation
  • Pharmaceutical Preparations

• iSwathX: an interactive web-based application for extension of DIA peptide reference libraries

  Noor, Z., Wu, J. X., Pascovici, D., Mohamedali, A., Molloy, M. P., Baker, M. S. & Ranganathan, S., 1 Feb 2019, In : Bioinformatics. 35, 3, p. 538-539 2 p.

  Research output: Contribution to journal › Article

  • Peptide Library
  • Peptides
  • Web-based
  • Libraries
  • Mass Spectrometry
  5 Citations (Scopus)

• Loss of Shp2 rescues BDNF/TrkB signaling and contributes to improved retinal ganglion cell neuroprotection

  Chitranshi, N., Dheer, Y., Mirzaei, M., Wu, Y., Salekdeh, G. H., Abbasi, M., Gupta, V., Vander Wall, R., You, Y., Graham, S. L. & Gupta, V., 6 Feb 2019, In : Molecular Therapy. 27, 2, p. 424-441 18 p.

  Research output: Contribution to journal › Article

  • trkB Receptor
  • Retinal Ganglion Cells
  • Glaucoma
  • Endoplasmic Reticulum Stress
  • Apoptosis
  10 Citations (Scopus)

• Plant–microbe symbiosis: what has proteomics taught us?

  Khatabi, B., Gharechahi, J., Ghaffari, M. R., Liu, D., Haynes, P. A., McKay, M. J., Mirzaei, M. & Salekdeh, G. H., Aug 2019, In : Proteomics. 19, 16, p. 1-20 20 p., 1800105.

  Research output: Contribution to journal › Review article

  • Symbiosis
  • Proteomics
  • Functional analysis
  • Productivity
  • Food Supply
  4 Citations (Scopus)

• Potential early clinical stage colorectal cancer diagnosis using a proteomics blood test panel

  Ahn, S. B., Sharma, S., Mohamedali, A., Mahboob, S., Redmond, W. J., Pascovici, D., Wu, J. X., Zaw, T., Adhikari, S., Vaibhav, V., Nice, E. C. & Baker, M. S., 28 Aug 2019, In : Clinical Proteomics. 16, 1, p. 1-20 20 p., 34.

  Research output: Contribution to journal › Article

  Open Access

  File

  • Hematologic Tests
  • Proteomics
  • Colorectal Neoplasms
  • Blood
  • Biomarkers
  8 Citations (Scopus)

  14 Downloads (Pure)

• Practical integration of multi-run iTRAQ data

  Pascovici, D., Song, X., Wu, J., Zaw, T. & Molloy, M., 2019, Mass spectrometry of proteins: methods and protocols. Evans, C. A., Wright, P. C. & Noirel, J. (eds.). New York: Humana Press, p. 199-215 17 p. (Methods in Molecular Biology; vol. 1977).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Proteins
  • Workflow
  • Databases

• Protein SWATH library construction including recombinant proteins allows identification and quantification of lower abundance human plasma cancer biomarkers

  Ahn, S. B., Kamath, K. S., Mohamedali, A., Noor, Z., Pascovici, D., Wu, J., Adhikari, S., McKay, M. & Baker, M. S., Nov 2019, In : Asia-Pacific Journal of Clinical Oncology. 15, Supplement 9, p. 60 1 p., 17.

  Research output: Contribution to journal › Meeting abstract

• Proteome profiling of Pseudomonas aeruginosa PAO1 identifies novel responders to copper stress

  Wright, B. W., Kamath, K. S., Krisp, C. & Molloy, M. P., 1 Apr 2019, In : BMC Microbiology. 19, p. 1-13 13 p., 69.

  Research output: Contribution to journal › Article

  Open Access

  File

  • Proteome
  • Pseudomonas aeruginosa
  • Copper
  • Proteins
  • Copper Sulfate
  5 Citations (Scopus)

  9 Downloads (Pure)

• Proteomes of leaf-growing zones in rice genotypes with contrasting drought tolerance

  Wu, Y., Mirzaei, M., Pascovici, D., Haynes, P. A. & Atwell, B. J., May 2019, In : Proteomics. 19, 9, p. 1-11 11 p., 1800310.

  Research output: Contribution to journal › Article

  Open Access

  File

  • Drought
  • Droughts
  • Proteome
  • Genotype
  • Drying
  6 Citations (Scopus)

• Proteomic screen with the proto-oncogene beta-catenin identifies interaction with Golgi coatomer complex I

  Semaan, C., Henderson, B. R. & Molloy, M. P., Sep 2019, In : Biochemistry and Biophysics Reports. 19, p. 1-6 6 p., 100662.

  Research output: Contribution to journal › Article

  Open Access

  File

  • Catenins
  • Proto-Oncogenes
  • beta Catenin
  • Golgi Apparatus
  • Proteomics
  1 Citation (Scopus)

  1 Downloads (Pure)

• Proteomics reveals cell‐surface urokinase plasminogen activator receptor expression impacts most hallmarks of cancer

  Ahn, S. B., Mohamedali, A., Pascovici, D., Adhikari, S., Sharma, S., Nice, E. C. & Baker, M. S., Nov 2019, In : Proteomics. 19, 21-22, p. 1-13 13 p., 1900026.

  Research output: Contribution to journal › Article

  • Urokinase Plasminogen Activator Receptors
  • Proteomics
  • Neoplasm Metastasis
  • Colorectal Neoplasms
  • Genomic Instability
  1 Citation (Scopus)

• Radiation-stimulated translocation of CD166 and CRYAB to the endothelial surface provides potential vascular targets on irradiated brain arteriovenous malformations

  McRobb, L. S., McKay, M. J., Gauden, A. J., Lee, V. S., Subramanian, S., Thomas, S. G., Wiedmann, M. K. H., Moutrie, V., Grace, M., Zhao, Z., Molloy, M. P. & Stoodley, M. A., Dec 2019, In : International Journal of Molecular Sciences. 20, 23, p. 1-13 13 p., 5830.

  Research output: Contribution to journal › Article

  Open Access

  File

  • Arteriovenous Malformations
  • Surface potential
  • brain
  • Blood Vessels
  • Brain
  2 Citations (Scopus)

  4 Downloads (Pure)

• The influence of exogenous phytase on the post-enteral availability of amino acids in broiler chickens offered wheat-based diets

  Moss, A. F., Chrystal, P., McQuade, L., Cadogen, D., Liu, S. Y. & Selle, P. H., Dec 2019, In : Animal Feed Science and Technology. 258, p. 1-8 8 p., 114300.

  Research output: Contribution to journal › Article

  • phytases
  • broiler chickens
  • wheat
  • amino acids
  • diet
  1 Citation (Scopus)

• The quest for missing proteins in rice

  Rahiminejad, M., Ledari, M. T., Mirzaei, M., Ghorbanzadeh, Z., Kavousi, K., Ghaffari, M. R., Haynes, P. A., Komatsu, S. & Salekdeh, G. H., 7 Jan 2019, In : Molecular Plant. 12, 1, p. 4-6 3 p.

  Research output: Contribution to journal › Article

  Open Access
  5 Citations (Scopus)