• 774 Citations
  • 15 h-Index
19992019
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Research Outputs 1999 2018

2018

Systems-based approaches enable identification of gene targets which improve the flavour profile of low-ethanol wine yeast strains

Varela, C., Schmidt, S. A., Borneman, A. R., Pang, C. N. I., Krömerx, J. O., Khan, A., Song, X., Hodson, M. P., Solomon, M., Mayr, C. M., Hines, W., Pretorius, I. S., Baker, M. S., Roessner, U., Mercurio, M., Henschke, P. A., Wilkins, M. R. & Chambers, P. J., 1 Sep 2018, In : Metabolic Engineering. 49, p. 178-191 14 p.

Research output: Contribution to journalArticleResearchpeer-review

Wine
Flavors
Yeast
Ethanol
Genes
2017

A preliminary investigation of short-term cytokine expression in gingival crevicular fluid secondary to high-level orthodontic forces and the associated root resorption: case series analytical study

Ahuja, R., Almuzian, M., Khan, A., Pascovici, D., Dalci, O. & Darendeliler, M. A., 7 Aug 2017, In : Progress in Orthodontics. 18, p. 1-9 9 p., 23.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Gingival Crevicular Fluid
Root Resorption
Orthodontics
Cytokines
Tooth

Evaluation of two high-throughput proteomic technologies for plasma biomarker discovery in immunotherapy-treated melanoma patients.

Lim, S. Y., Lee, J., Welsh, S. J., Ahn, S. B., Breen, E., Khan, A., Carlino, M. S., Menzies, A. M., Kefford, R. F., Scolyer, R. A., Long, G. V. & Rizos, H., 2017, In : Biomarker research. 5, p. 1-12 12 p., 32.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Biomarkers
Proteomics
Immunotherapy
Melanoma
Assays

Plasma biomarker proteins for detection of human growth hormone administration in athletes

Tan, S-H., Lee, A., Pascovici, D., Care, N., Birzniece, V., Ho, K., Molloy, M. P. & Khan, A., 30 Aug 2017, In : Scientific Reports. 7, 1, p. 1-12 12 p., 10039.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Human Growth Hormone
Athletes
Growth Hormone
Blood Proteins
Biomarkers

Proteomic response to linoleic acid hydroperoxide in Saccharomyces cerevisiae

O'Doherty, P. J., Khan, A., Johnson, A. J., Rogers, P. J., Bailey, T. D. & Wu, M. J., May 2017, In : FEMS Yeast Research. 17, 3, p. 1-11 11 p., fox022.

Research output: Contribution to journalArticleResearchpeer-review

Proteomics
Saccharomyces cerevisiae
Yeasts
Proteins
Flavodoxin
2016

The statistical value of raw fluorescence signal in Luminex xMAP based multiplex immunoassays

Breen, E. J., Tan, W. & Khan, A., 31 May 2016, In : Scientific Reports. 6, 13 p., 26996.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
2015

A novel multiplexed immunoassay identifies CEA, IL-8 and prolactin as prospective markers for Dukes' stages A-D colorectal cancers

Mahboob, S., Ahn, S. B., Cheruku, H. R., Cantor, D., Rennel, E., Fredriksson, S., Edfeldt, G., Breen, E. J., Khan, A., Mohamedali, A., Muktadir, M. G., Ranganathan, S., Tan, S. H., Nice, E. & Baker, M. S., 2015, In : Clinical Proteomics. 12, 1, p. 1-12 12 p., 10.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Carcinoembryonic Antigen
Interleukin-8
Immunoassay
Prolactin
Colorectal Neoplasms

Bead-based multiplex immuno-assays for cytokines, chemokines, growth factors and other analytes: median fluorescence intensities versus their derived absolute concentration values for statistical analysis

Breen, E. J., Polaskova, V. & Khan, A., 2015, In : Cytokine. 71, 2, p. 188-198 11 p.

Research output: Contribution to journalArticleResearchpeer-review

Chemokines
Assays
Intercellular Signaling Peptides and Proteins
Statistical methods
Fluorescence

Rising CO2 concentration altered wheat grain proteome and flour rheological characteristics

Fernando, N., Panozzo, J., Tausz, M., Norton, R., Fitzgerald, G., Khan, A. & Seneweera, S., 2015, In : Food Chemistry. 170, p. 448-454 7 p.

Research output: Contribution to journalArticleResearchpeer-review

Bread
Flour
Proteome
proteome
dough
2014
Open Access
File
Plasma (human)
Chemokines
Intercellular Signaling Peptides and Proteins
Cytokines
Proteins

Influence of temperature on the development of the temperate root-knot nematodes Meloidogyne chitwoodi and M. fallax

Khan, A., Wesemael, W. & Moens, M., 2014, In : Russian Journal of Nematology. 22, 1, p. 1-9 9 p.

Research output: Contribution to journalArticleResearchpeer-review

Meloidogyne chitwoodi
root-knot nematodes
nematode
temperature
hatching

Profiling of the secretome of human cancer cells: preparation of supernatant for proteomic analysis

Rogers, L. J., Suchowerska, N., Khan, A., Polaskova, V. & Mckenzie, D. R., 2014, In : Electrophoresis. 35, 18, p. 2626-2633 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Proteomics
Cells
Serum-Free Culture Media
Neoplasms
Proteins
2013

Two strings to the systems biology bow: Co-extracting the metabolome and proteome of yeast

Schmidt, S. A., Jacob, S. S., Ahn, S. B., Rupasinghe, T., Krömer, J. O., Khan, A. & Varela, C., 2013, In : Metabolomics. 9, 1, p. 173-188 16 p.

Research output: Contribution to journalArticleResearchpeer-review

Systems Biology
Metabolome
Proteome
Metabolites
Proteomics
2012

Detection and quantitation of forty eight cytokines, chemokines, growth factors and nine acute phase proteins in healthy human plasma, saliva and urine

Khan, A., 2012, In : Journal of Proteomics. 75, 15, p. 4802-4819 18 p.

Research output: Contribution to journalArticleResearchpeer-review

Plasma (human)
Acute-Phase Proteins
Saliva
Chemokines
Intercellular Signaling Peptides and Proteins
2011

Discovery of a novel biomarker in the urine in women with endometriosis

Tokushige, N., Markham, R., Crossett, B., Ahn, S. B., Nelaturi, V. L., Khan, A. & Fraser, I. S., Jan 2011, In : Fertility and Sterility. 95, 1, p. 46-49 4 p.

Research output: Contribution to journalArticleResearchpeer-review

Endometriosis
Biomarkers
Urine
Keratin-19
Hysteroscopy

Systems biology: a new paradigm for industrial yeast strain development

Varela, C., Scbmidt, S. A., Borneman, A. R., Krömer, J. O., Khan, A., Chambers, P. J. & Consortium, T. A. W. Y. S. B., 2011, In : Microbiology Australia. 32, 4, p. 151-155 5 p.

Research output: Contribution to journalArticleResearchpeer-review

Systems Biology
Yeasts
Metabolic Engineering
Biological Phenomena
Fermentation
2010

High-abundance protein depletion: Comparison of methods for human plasma biomarker discovery

Polaskova, V., Kapur, A., Khan, A., Molloy, M. P. & Baker, M. S., Feb 2010, In : Electrophoresis. 31, 3, p. 471-482 12 p.

Research output: Contribution to journalArticleResearchpeer-review

Plasma (human)
Biomarkers
Proteins
Gels
Plasmas
2009

Fungal proteins with mannanase activity identified directly from a Congo Red stained zymogram by mass spectrometry

Peterson, R., Grinyer, J., Joss, J., Khan, A. & Nevalainen, H., Dec 2009, In : Journal of Microbiological Methods. 79, 3, p. 374-377 4 p.

Research output: Contribution to journalArticleResearchpeer-review

Congo Red
Fungal Proteins
Protein Transport
Mass Spectrometry
Gels
2008

Guidelines for reporting the use of gel electrophoresis in proteomics

Gibson, F., Anderson, L., Babnigg, G., Baker, M., Berth, M., Binz, P. A., Borthwick, A., Cash, P., Day, B. W., Friedman, D. B., Garland, D., Gutstein, H. B., Hoogland, C., Jones, N. A., Khan, A., Klose, J., Lamond, A. I., Lemkin, P. F., Lilley, K. S., Minden, J. & 10 othersMorris, N. J., Paton, N. W., Pisano, M. R., Prime, J. E., Rabilloud, T., Stead, D. A., Taylor, C. F., Voshol, H., Wipat, A. & Jones, A. R., Aug 2008, In : Nature Biotechnology. 26, 8, p. 863-864 2 p.

Research output: Contribution to journalLetterResearchpeer-review

"Host tissue damage" signal ATP impairs IL-12 and IFN gamma secretion in LPS stimulated whole human blood

Nalos, M., Huang, S., Sluyter, R., Khan, A., Santner-Nanan, B., Nanan, R. & McLean, A. S., 2008, In : Intensive Care Medicine. 34, 10, p. 1891-1897 7 p.

Research output: Contribution to journalArticleResearchpeer-review

Proteomic analysis of the knob-producing nematode-trapping fungus Monacrosporium lysipagum

Khan, A., Williams, K. L., Soon, J. & Nevalainen, H. K. M., Dec 2008, In : Mycological Research. 112, 12, p. 1447-1452 6 p.

Research output: Contribution to journalArticleResearchpeer-review

nematophagous fungi
proteomics
Mycelium
Proteomics
mycelium
2007

Non-specific binding of monoclonal human erythropoietin antibody AE7A5 to Escherichia coli and Saccharomyces cerevisiae proteins

Khan, A. & Baker, M. S., Apr 2007, In : Clinica Chimica Acta. 379, 1-2, p. 173-175 3 p.

Research output: Contribution to journalLetterResearchpeer-review

2006

A comparison of immunodepletion strategies for plasma biomarker discovery

Baker, M. S., Khan, A., Lee, A., Shum, W. -K., Soon, J., Molloy, M. P., Polaskova, V., Tan, S. -H. & Kapur, A., Oct 2006, In : Molecular and Cellular Proteomics. 5, S10, p. S180-S180 1 p.

Research output: Contribution to journalMeeting abstractResearchpeer-review

A novel approach for the depletion of high abundance proteins from human plasma

Kapur, A., Khan, A., Shum, W. -K., Tan, S. -H., Molloy, M. P., Polaskova, V. & Baker, M. S., Oct 2006, In : Molecular and Cellular Proteomics. 5, S10, p. S209-S209 1 p.

Research output: Contribution to journalMeeting abstractResearchpeer-review

Control of plant-parasitic nematodes by Paecilomyces lilacinus and Monacrosporium lysipagum in pot trials

Khan, A., Williams, K. L. & Nevalainen, H. K. M., Oct 2006, In : BioControl. 51, 5, p. 643-658 16 p.

Research output: Contribution to journalArticleResearchpeer-review

Purpureocillium lilacinum
plant parasitic nematodes
Meloidogyne javanica
fungi
Heterodera avenae

Infection of plant-parasitic nematodes by Paecilomyces lilacinus and Monacrosporium lysipagum

Khan, A., Williams, K. L. & Nevalainen, H. K. M., Oct 2006, In : BioControl. 51, 5, p. 659-678 20 p.

Research output: Contribution to journalArticleResearchpeer-review

Purpureocillium lilacinum
plant parasitic nematodes
Meloidogyne javanica
Pratylenchus neglectus
Heterodera avenae

Optimisation of human plasma sample preparation using immunodepletion and DIGE for biomarker discovery

Khan, A., Soon, J., Kapur, A., Molloy, M. P. & Baker, M. S., Oct 2006, In : Molecular and Cellular Proteomics. 5, S10, p. S209-S209 1 p.

Research output: Contribution to journalMeeting abstractResearchpeer-review

Overcoming the difficulties of finding a Cryptosporidium diagnostic biomarker by proteomics

Truong, Q., Khan, A., Ashman, K., Baker, M. S. & Ferrari, B. C., 2006.

Research output: Contribution to conferenceAbstractResearch

Reply by the authors to 'New urinary EPO drug testing method using two-dimensional gel electrophoresis'

Khan, A. & Packer, N., Nov 2006, In : Clinica Chimica Acta. 373, 1-2, p. 188 1 p.

Research output: Contribution to journalLetterResearchpeer-review

Simple urinary sample preparation for proteomic analysis

Khan, A. & Packer, N. H., Oct 2006, In : Journal of Proteome Research. 5, 10, p. 2824-2838 15 p.

Research output: Contribution to journalArticleResearchpeer-review

Proteomics
Urine
Gels
Proteome
Proteins
2005

New urinary EPO drug testing method using two-dimensional gel electrophoresis

Khan, A., Truong, S. T., Breen, E. J., Nelson, K., Howe, C. & Packer, N. H., 2005, Recent advances in doping analysis: proceedings of the Manfred Donike Workshop. 23rd Cologne Workshop on Dope Analysis, 27th February to 4th March 2005. Schänzer, W., Geyer, H., Gotzmann, A. & Mareck, U. (eds.). Köln: Sport und Buch Strauss, p. 305-305 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearch

New urinary EPO drug testing method using two-dimensional gel electrophoresis

Khan, A., Grinyer, J., Truong, S. T., Breen, E. J. & Packer, N. H., Aug 2005, In : Clinica Chimica Acta. 358, 1-2, p. 119-130 12 p.

Research output: Contribution to journalArticleResearchpeer-review

Electrophoresis, Gel, Two-Dimensional
Electrophoresis
Gels
Urine
Testing
2004

Detection of recombinant Erythropoietin in urine by two-dimensional gel electrophoresis

Khan, A., Grinyer, J., Truong, S., Breen, E. J., Howe, C., Herbert, B., Williams, K. L. & Packer, N. H., 2004, Recent advances in doping analysis (12): proceedings of the Manfred Donike Workshop 22nd Cologne Workshop on Dope Analysis, 7th to 12th March, 2004. Schänzer, W., Geyer, H., Gotzmann, A. & Mareck, U. (eds.). Köln: Sport und Buch Strauss, p. 317-318 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearch

Effects of Paecilomyces lilacinus protease and chitinase on the eggshell structures and hatching of Meloidogyne javanica juveniles

Khan, A., Williams, K. L. & Nevalainen, H. K. M., Nov 2004, In : Biological Control. 31, 3, p. 346-352 7 p.

Research output: Contribution to journalArticleResearchpeer-review

Purpureocillium lilacinum
eggshell
Meloidogyne javanica
chitinase
egg shell
2003
Paecilomyces
Chitinases
Serine Proteases
Gels
Peptide Hydrolases
1999

Infection of Meloidogyne javanica by Paecilomyces lilacinus

Holland, R. J., Williams, K. L. & Khan, A., Apr 1999, In : Nematology. 1, 2, p. 131-139 9 p.

Research output: Contribution to journalArticleResearchpeer-review