• 183 Citations
  • 6 h-Index
19942019
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Research Outputs 1994 2019

2019

Combination of loss functions for deep text classification

Hajiabadi, H., Molla-Aliod, D., Monsefi, R. & Yazdi, H. S., 19 Jul 2019, In : International Journal of Machine Learning and Cybernetics. 11 p.

Research output: Contribution to journalArticleResearchpeer-review

Backpropagation
Classifiers
Neural networks
Experiments
Deep neural networks
2018

Macquarie University at BioASQ 6b: deep learning and deep reinforcement learning for query-based multi-document summarisation

Molla, D., 2018, The 6th BioASQ Workshop: A challenge on large-scale biomedical semantic indexing and question answering: Proceedings of the Workshop. Stroudsburg: Association for Computational Linguistics, p. 22-29 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearchpeer-review

Reinforcement learning
Neural networks
Deep learning
Experiments

Overview of the 2018 ALTA Shared Task: classifying patent applications

Molla, D. & Seneviratne, D., Dec 2018, Proceedings of the Australasian Language Technology Association Workshop 2018. Kim, S. M. & Zhang, X. J. (eds.). Association for Computational Linguistics (ACL), p. 84-88 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearch

Open Access

Supervised machine learning for extractive query based summarisation of biomedical data

Mandeep Kaur & Molla, D., 2018, Ninth International Workshop on Health Text Mining and Information Analysis (LOUHI): Proceedings of the Workshop. Stroudsburg: Association for Computational Linguistics, p. 29-37 9 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearchpeer-review

Learning systems
Automation
2017

Automated text summarisation and evidence-based medicine: a survey of two domains

Sarker, A., Molla, D. & Paris, C., 25 Jun 2017, (Submitted) Arxiv.org pre-prints. 35 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearch

Medicine
Processing

CSIRO at 2017 TREC Precision Medicine Track

Nguyen, V., Karimi, S., Falamaki, S., Molla, D., Paris, C. & Wan, S., 2017, The Twenty-Sixth Text REtrieval Conference (TREC 2017) Proceedings. National Institute of Standards and Technology, 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearchpeer-review

Merging
Medicine
Genes

Macquarie University at BioASQ 5b: Query-based summarisation techniques for selecting the ideal answers

Molla, D., 2017, BioNLP 2017 : SIGBioMed Workshop on Biomedical Natural Language Processing. Association for Computational Linguistics, p. 67-75 9 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearchpeer-review

Open Access
Experiments
Deep learning

On extending neural networks with loss ensembles for text classification

Hajiabadi, H., Molla, D. & Monsefi, R., 2017, Australasian Language Technology Association Workshop 2017: Proceedings of the Workshop. Wong, J. S-M. & Haffari, G. (eds.). p. 98-102 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearchpeer-review

Labels
Neural networks
Learning systems

Overview of the 2017 ALTA Shared Task: correcting OCR errors

Molla, D. & Cassidy, S., 2017, Australasian Language Technology Association Workshop 2017: Proceedings of the Workshop. Wong, J. S-M. & Haffari, G. (eds.). p. 115-118 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearch

Optical character recognition

Towards the use of deep reinforcement learning with global policy For query-based extractive summarisation

Molla, D., 2017, Australasian Language Technology Association Workshop 2017: Proceedings of the Workshop. Wong, J. S-M. & Haffari, G. (eds.). p. 103-107 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearchpeer-review

Reinforcement learning
Learning systems
Labels
Neural networks
2016

A corpus for research in text processing for evidence based medicine

Mollá, D., Santiago-Martínez, M. E., Sarker, A. & Paris, C., 1 Dec 2016, In : Language Resources and Evaluation. 50, 4, p. 705-727 23 p.

Research output: Contribution to journalArticleResearchpeer-review

text processing
medicine
evidence
Text Processing
Evidence-based Medicine

Incorporating tweet relationships into topic derivation

Nugroho, R., Molla-Aliod, D., Yang, J., Zhong, Y., Paris, C. & Nepal, S., 2016, Computational Linguistics - 14th International Conference of the Pacific Association for Computaitonal Linguistics, PACLING 2015, Revised Selected Papers. Hasida, K. & Purwarianti, A. (eds.). Singapore: Springer, Springer Nature, Vol. 593. p. 177-190 14 p. (Communications in Computer and Information Science; vol. 593).

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearchpeer-review

Information use
Experiments

Overview of the 2016 alta shared task: cross-KB coreference

Chisholm, A., Hachey, B. & Molla-Aliod, D., 2016, Proceedings of the Australasian Language Technology Association Workshop 2016. Caulfield: Australasian Language Technology Association, p. 172-175 4 p. (Proceedings of the Australasian Language Technology Workshop; vol. 14).

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearchpeer-review

Websites

Query-oriented evidence extraction to support evidence-based medicine practice

Sarker, A., Mollá, D. & Paris, C., Feb 2016, In : Journal of Biomedical Informatics. 59, p. 169-184 16 p.

Research output: Contribution to journalArticleResearchpeer-review

Evidence-Based Practice
Evidence-Based Medicine
Medicine
Benchmarking
Research

Semi-supervised clustering of medical text

Sahoo, P., Ekbal, A., Saha, S., Molla, D. & Nandan, K., 2016, ClinicalNLP 2016 Clinical Natural Language Processing Workshop: proceedings of the Workshop . Stroudsburg PA: Association for Computational Linguistics, p. 23-31 9 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearchpeer-review

Open Access
File
Evolutionary algorithms
Medicine
2015

Automatic evidence quality prediction to support evidence-based decision making

Sarker, A., Mollá, D. & Paris, C., 1 Jun 2015, In : Artificial Intelligence in Medicine. 64, 2, p. 89-103 15 p.

Research output: Contribution to journalArticleResearchpeer-review

Decision Making
Decision making
Publications
Point-of-Care Systems
Metadata

Overview of the 2015 ALTA shared task: identifying French cognates in English text

Sitbon, L., Molla, D. & Wang, H., 2015, In : ALTA 2015 : Proceedings of Australasian Language Technology Association Workshop 2015. p. 134-137 4 p.

Research output: Contribution to journalConference paperResearchpeer-review

Electronic mail
Linguistics
Experiments

Similarity metrics for clustering PubMed abstracts for evidence based medicine

Hassanzadeh, H., Mollá, D., Groza, T., Nguyen, A. & Hunter, J., 2015, In : ALTA 2015 : Proceedings of Australasian Language Technology Association Workshop 2015. p. 48-56 9 p.

Research output: Contribution to journalConference paperResearchpeer-review

Syntactics
Medicine
Semantics
2014

Australia Loves Language Puzzles: The Australian Computational and Linguistics Olympiad (OzCLO)

Estival, D., Bow, C., Henderson, J., Kelly, B., Laughren, M., Mayer, E., Mollá, D., Mrowa-Hopkins, C., Nordlinger, R., Rieschild, V., Schalley, A. C., Stanley, A. W. & Vaughan, J., 1 Dec 2014, In : Linguistics and Language Compass. 8, 12, p. 659-670 12 p.

Research output: Contribution to journalArticleResearch

love
linguistics
language
student
school

Document distance for the automated expansion of relevance judgements for information retrieval evaluation

Mollá, D., Amini, I. & Martinez, D., 2014, Proceedings of the ACM SIGIR Workshop on Gathering Efficient Assessments of Relevance (GEAR). United States: Cornell University Library, p. 1-4 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearchpeer-review

Information retrieval

Impact of citing papers for summarisation of clinical documents

Mollá, D., Jones, C. & Sarker, A., 2014, In : Proceedings of Australasian Language Technology Association Workshop 2014 : ALTA 2014. p. 79-87 9 p.

Research output: Contribution to journalConference paperResearchpeer-review

Information use
Communication

The computational linguistics summarization pilot task

Jaidka, K., Chandrasekaran, M. K., Elizalde, B. F., Jha, R., Jones, C., Kan, M-Y., Khanna, A., Molla-Aliod, D., Radev, D. R. & Ronzano, F., 2014, The computational linguistics summarization pilot task.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearchpeer-review

2013

An Approach for automatic multi-label classification of medical sentences

Sarker, A., Mollá-Aliod, D. & Paris, C., 2013, Louhi 2013: Proceedings of the 4th International Louhi Workshop on Health Document Text Mining and Information Analysis. Suominen, H. (ed.). Eveleigh NSW: NICTA, p. 1-6 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearchpeer-review

An approach for query-focused text summarisation for evidence based medicine

Sarker, A., Mollá, D. & Paris, C., 2013, Artificial Intelligence in Medicine: 14th Conference on Artificial Intelligence in Medicine, AIME 2013, Murcia, Spain, May 29 – June 1, 2013. Proceedings. Peek, N., Marín Morales, R. & Peleg, M. (eds.). Heidelberg: Springer, Springer Nature, p. 295-304 10 p. (Lecture Notes in Computer Science; vol. 7885).

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearchpeer-review

Summarization
Medicine
Statistics
Query
Target

Automatic prediction of evidence-based recommendations via sentence-level polarity classification

Sarker, A., Mollá-Aliod, D. & Paris, C., 2013, IJCNLP 2013: Proceedings of the Sixth International Joint Conference on Natural Language Processing. Nagoya, Japan: Asian Federation of Natural Language Processing, p. 712-718 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearchpeer-review

Experiments

Clustering of medical publications for evidence based medicine summarisation

Shash, S. F. & Mollá, D., 2013, Artificial Intelligence in Medicine: 14th Conference on Artificial Intelligence in Medicine, AIME 2013, Proceedings. Peek, N., Marín Morales, R. & Peleg, M. (eds.). Heidelberg: Springer, Springer Nature, p. 305-309 5 p. (Lecture Notes in Computer Science; vol. 7885).

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearchpeer-review

Summarization
Medicine
Clustering
K-means Clustering
Natural Language

Learning from OzCLO, the Australian Computational and Linguistics Olympiad

Estival, D., Henderson, J., Laughren, M., Mollá, D., Bow, C., Nordlinger, R., Rieschild, V., Schalley, A. C., Stanley, A. W. & Mrowa-Hopkins, C., 2013, Proceedings of the Fourth Workshop on Teaching Natural Language Processing. Stroudsburg, PA: Association for Computational Linguistics (ACL), p. 35-41 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearchpeer-review

Open Access
File
linguistics
learning
student
school
staff

Multi-objective optimization for clustering of medical publications

Ekbal, A., Saha, S., Mollá, D. & Ravikumar, K., 2013, ALTA 2013: Proceedings of the Australasian Language Technology Association Workshop. Karimi, S. & Verspoor, K. (eds.). Brisbane: Australasian Language Technology Association, p. 53-61 9 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearchpeer-review

Multiobjective optimization
Medicine
Learning systems
Processing

Overview of the 2013 ALTA shared task

Mollá, D., 2013, ALTA 2013: Proceedings of the Australasian Language Technology Association Workshop. Karimi, S. & Verspoor, K. (eds.). Brisbane: Australasian Language Technology Association, p. 132-136 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearch

Towards information retrieval evaluation with reduced and only positive judgements

Mollá, D., Martinez, D. & Amini, I., 2013, Proceedings of the 18th Australasian Document Computing Symposium, ADCS 2013. Sitbon, L. (ed.). New York: Association for Computing Machinery (ACM), p. 109-112 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearchpeer-review

Information retrieval
2012

Creation of a corpus for evidence based medicine summarisation

Mollá, D. & Santiago-Martínez, M. E., 2012, In : Australasian Medical Journal. 5, 9, p. 503-506 4 p.

Research output: Contribution to journalArticleResearchpeer-review

Evidence-Based Medicine
Crowdsourcing
Research
Family Practice
PubMed

Detection of evidence in clinical research papers

Davis-Desmond, P. & Mollá, D., 2012, Proceedings of the Fifth Australasian Workshop on Health Informatics and Knowledge Management (HIKM 2012), Melbourne, Australia, 31 January - 3 February 2012. Butler-Henderson, K. & Gray, K. (eds.). Sydney: Australian Computer Society, p. 13-20 8 p. (Conferneces in research and practice in information technology; vol. 129).

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearchpeer-review

Classifiers
Knowledge based systems
Open Access
File
Classifiers
Experiments
Information use
Logistics
Labels

Extractive evidence based medicine summarisation based on sentence-specific statistics

Sarker, A., Mollá, D. & Paris, C., 2012, Proceedings of the 25th IEEE International Symposium on Computer-Based Medical Systems, CBMS 2012. Soda, P. & Tortorella, F. (eds.). Piscataway, NJ: Institute of Electrical and Electronics Engineers (IEEE), p. 1-4 4 p. 6266373

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearchpeer-review

Evidence-Based Medicine
Medicine
Statistics

Extractive summarisation of medical documents using domain knowledge and corpus statistics

Sarker, A., Mollá, D. & Paris, C., 2012, In : Australasian Medical Journal. 5, 9, p. 478-481 4 p.

Research output: Contribution to journalArticleResearchpeer-review

Evidence-Based Medicine
Evidence-Based Practice
Biomedical Research

Overview of the ALTA 2012 shared task

Amini, I., Martinez, D. & Mollá, D., 2012, In : Proceedings of the Australasian Language Technology Association Workshop 2012 : ALTA 2012. 10, p. 124-129 6 p.

Research output: Contribution to journalConference paperResearch

Open Access
File
Classifiers
Labeling
Medicine
Students

Simple similarity-based question answering strategies for biomedical text

Martinez, D., MacKinlay, A., Molla-Aliod, D., Cavedon, L. & Verspoor, K., 2012, In : CEUR Workshop Proceedings. 1178, p. 1-13 13 p.

Research output: Contribution to journalConference paperResearch

Syntactics
Semantics

Towards two-step multi-document summarisation for evidence based medicine: a quantitative analysis

Sarker, A., Mollá-Aliod, D. & Paris, C., 2012, In : Proceedings of the Australasian Language Technology Association Workshop 2012 : ALTA 2012. 10, p. 79-87 9 p.

Research output: Contribution to journalConference paperResearchpeer-review

Open Access
File
medicine
quantitative analysis
analysis
document
evaluation
2011

Automatic grading of evidence: the 2011 ALTA shared task

Mollá, D. & Sarker, A., 2011, In : Proceedings of the Australasian Language Technology Association Workshop 2011. p. 4-8 5 p.

Research output: Contribution to journalConference paperResearch

Open Access
File
Learning systems
Classifiers
Semantics

Development of a corpus for evidence based medicine summarisation

Mollá, D. & Santiago-Martinez, M. E., 2011, In : Proceedings of the Australasian Language Technology Association Workshop 2011. p. 86-94 9 p.

Research output: Contribution to journalConference paperResearchpeer-review

Open Access
File
Medicine
Statistical methods

Outcome polarity identification of medical papers

Sarker, A., Mollá-Aliod, D. & Paris, C., 2011, In : Proceedings of the Australasian Language Technology Association Workshop 2011. p. 105-114 10 p.

Research output: Contribution to journalConference paperResearchpeer-review

Open Access
File
Learning systems
Linguistics
Feature extraction
Identification (control systems)
Classifiers
2010

A Corpus for Evidence Based Medicine Summarisation

Molla-Aliod, D., 2010, In : Australasian Language Technology Workshop. p. 76-80 5 p.

Research output: Contribution to journalConference paperResearchpeer-review

Medicine
Testing

A rule-based approach for automatic identification of publication types of medical papers

Sarker, A. & Molla-Aliod, D., 2010, ADCS 2010 - Proceedings of the Fifteenth Australasian Document Computing Symposium. Scholer, F., Trotman, A. & Turpin, A. (eds.). Melbourne, Australia: RMIT University, p. 84-88 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearchpeer-review

Experiments

A Study on the use of search engines for answering clinical questions

Tutos, A. & Mollá, D., 2010, HIKM 2010: Proceedings of the Fourth Australasian Workshop on Health Informatics and Knowledge Management. Maeder, A. & Hansen, D. (eds.). Sydney: Australian Computer Society, p. 61-68 8 p. (Conferences in Research and Practice in Information Technology (CRPIT); vol. 108).

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearchpeer-review

Search Engine
Physicians
Dictionary
Evaluation
Taxonomy

Question answering

Molla-Aliod, D. & Vicedo, J-L., 1 Jan 2010, Handbook of Natural Language Processing, Second Edition. Indurkhya, N. & Damerau, F. J. (eds.). Boca Raton: CRC Press, Taylor & Francis Group, p. 485-510 26 p. (Chapman & Hall-CRC Machine Learning & Pattern Recognition Series).

Research output: Chapter in Book/Report/Conference proceedingChapterResearchpeer-review

Towards automatic grading of evidence

Sarker, A., Mollá-Aliod, D. & Paris, C., 2010, In : CEUR Workshop Proceedings. 744, p. 51-58 8 p.

Research output: Contribution to journalConference paperResearchpeer-review

Learning algorithms
Medicine
Learning systems
2009

From minimal logical forms for answer extraction to logical graphs for question answering

Mollá, D., 2009, Searching answers: Festschrift in honour of Michael Hess on the occasion of his 60th birthday. Clematide, S., Klenner, M. & Volk, M. (eds.). Munster, Germany: Verlagshaus Monsenstein und Vannerdat, p. 101-108 8 p. (MV Wissenschaft).

Research output: Chapter in Book/Report/Conference proceedingChapterResearchpeer-review

2008

Indexing on semantic roles for question answering

Pizzato, L. A. & Mollá, D., 2008, IRQA 2008: Proceedings of the 2nd Workshop on Information Retrieval for Question Answering, August 24, 2008, Manchester, UK. Greenwood, M. A. (ed.). Morristown, N.J.: Association for Computational Linguistics, p. 74-81 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearchpeer-review

Open Access
File
Labeling
Semantics
Costs