Research Output per year
Research Outputs
2020
Proteomic and metabolomic analysis of desiccation tolerance in wheat young seedlings
Koobaz, P., Reza Ghaffari, M., Heidari, M., Mirzaei, M., Ghanati, F., Amirkhani, A., Mortazavi, S. E., Moradi, F., Hajirezaei, M. R. & Salekdeh, G. H., Jan 2020, In : Plant Physiology and Biochemistry. 146, p. 349-362 14 p.Research output: Contribution to journal › Article
Stable cellulase immobilized on graphene oxide@CMC-g-poly(AMPS-co-AAm) hydrogel for enhanced enzymatic hydrolysis of lignocellulosic biomass
Ariaeenejad, S., Motamedi, E. & Hosseini Salekdeh, G., 15 Feb 2020, In : Carbohydrate Polymers. 230, p. 1-12 12 p., 115661.Research output: Contribution to journal › Article
1
Citation
(Scopus)
2019
200+ protein concentrations in healthy human blood plasma: targeted quantitative SRM SIS screening of chromosomes 18, 13, Y, and the mitochondrial chromosome encoded proteome
Kopylov, A. T., Ponomarenko, E. A., Ilgisonis, E. V., Pyatnitskiy, M. A., Lisitsa, A. V., Poverennaya, E. V., Kiseleva, O. I., Farafonova, T. E., Tikhonova, O. V., Zavialova, M. G., Novikova, S. E., Moshkovskii, S. A., Radko, S. P., Morukov, B. V., Grigoriev, A. I., Paik, Y-K., Salekdeh, G. H., Urbani, A., Zgoda, V. G. & Archakov, A. I., 4 Jan 2019, In : Journal of Proteome Research. 18, 1, p. 120-129 10 p.Research output: Contribution to journal › Article
4
Citations
(Scopus)
Abiotic stress responsive microRNome and proteome: how correlated are they?
Gharechahi, J., Sharifi, G., Mirzaei, M., Zeinalabedini, M. & Hosseini Salekdeh, G., Sep 2019, In : Environmental and Experimental Botany. 165, p. 150-160 11 p.Research output: Contribution to journal › Review article
Amyloid β induces early changes in the ribosomal machinery, cytoskeletal organization and oxidative phosphorylation in retinal photoreceptor cells
Deng, L., Pushpitha, K., Joseph, C., Gupta, V., Rajput, R., Chitranshi, N., Dheer, Y., Amirkhani, A., Kamath, K., Pascovici, D., Wu, J. X., Salekdeh, G. H., Haynes, P. A., Graham, S. L., Gupta, V. K. & Mirzaei, M., 22 Feb 2019, In : Frontiers in Molecular Neuroscience. 12, p. 1-14 14 p., 24.Research output: Contribution to journal › Article
Open Access
File
1
Citation
(Scopus)
8
Downloads
(Pure)
Application of carboxymethyl cellulose-g-poly(acrylic acid-co-acrylamide) hydrogel sponges for improvement of efficiency, reusability and thermal stability of a recombinant xylanase
Ariaeenejad, S., Hosseini, E., Motamedi, E., Moosavi-Movahedi, A. A. & Salekdeh, G. H., 1 Nov 2019, In : Chemical Engineering Journal. 375, p. 1-11 11 p., 122022.Research output: Contribution to journal › Article
2
Citations
(Scopus)
Down-regulation of a male-specific H3K4 demethylase, KDM5D, impairs cardiomyocyte differentiation
Meyfour, A., Pahlavan, S., Ansari, H., Baharvand, H. & Salekdeh, G. H., 6 Dec 2019, In : Journal of Proteome Research. 18, 12, p. 4277-4282 6 p.Research output: Contribution to journal › Article
1
Citation
(Scopus)
Gene expression patterns of Royan human embryonic stem cells correlate with their propensity and culture systems
Rassouli, H., Khalaj, M., Hassani, S-N., Nemati, S., Salekdeh, G. H. & Baharvand, H., 2019, In : Cell Journal. 21, 3, p. 290-299 10 p.Research output: Contribution to journal › Article
Open Access
File
38
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(Pure)
Identification and characterization of a novel thermostable xylanase from camel rumen metagenome
Ariaeenejad, S., Hosseini, E., Maleki, M., Kavousi, K., Moosavi-Movahedi, A. A. & Salekdeh, G. H., 1 Apr 2019, In : International Journal of Biological Macromolecules. 126, p. 1295-1302 8 p.Research output: Contribution to journal › Article
4
Citations
(Scopus)
Inhibition of human Y chromosome gene, SRY, promotes naïve state of human pluripotent stem cells
Taleahmad, S., Alikhani, M., Mollamohammadi, S., Yousefi, M., Taei, A., Hassani, S. N., Baharvand, H. & Salekdeh, G. H., 6 Dec 2019, In : Journal of Proteome Research. 18, 12, p. 4254-4261 8 p.Research output: Contribution to journal › Article
2
Citations
(Scopus)
Loss of Shp2 rescues BDNF/TrkB signaling and contributes to improved retinal ganglion cell neuroprotection
Chitranshi, N., Dheer, Y., Mirzaei, M., Wu, Y., Salekdeh, G. H., Abbasi, M., Gupta, V., Vander Wall, R., You, Y., Graham, S. L. & Gupta, V., 6 Feb 2019, In : Molecular Therapy. 27, 2, p. 424-441 18 p.Research output: Contribution to journal › Article
4
Citations
(Scopus)
Mining of camel rumen metagenome to identify novel alkali-thermostable xylanase capable of enhancing the recalcitrant lignocellulosic biomass conversion
Ariaeenejad, S., Maleki, M., Hosseini, E., Kavousi, K., Moosavi-Movahedi, A. A. & Salekdeh, G. H., Jun 2019, In : Bioresource Technology. 281, p. 343-350 8 p.Research output: Contribution to journal › Article
3
Citations
(Scopus)
Plant–microbe symbiosis: what has proteomics taught us?
Khatabi, B., Gharechahi, J., Ghaffari, M. R., Liu, D., Haynes, P. A., McKay, M. J., Mirzaei, M. & Salekdeh, G. H., Aug 2019, In : Proteomics. 19, 16, 20 p., 1800105.Research output: Contribution to journal › Review article
1
Citation
(Scopus)
Preconditioning of sperm with sublethal nitrosative stress: a novel approach to improve frozen–thawed sperm function
Hezavehei, M., Kouchesfahani, H. M., Shahverdi, A., Sharafi, M., Salekdeh, G. H. & Eftekhari-Yazdi, P., Mar 2019, In : Reproductive BioMedicine Online. 38, 3, p. 413-425 13 p.Research output: Contribution to journal › Article
1
Citation
(Scopus)
Root endophytic fungus Piriformospora indica improves drought stress adaptation in barley by metabolic and proteomic reprogramming
Ghaffari, M. R., Mirzaei, M., Ghabooli, M., Khatabi, B., Wu, Y., Zabet-Moghaddam, M., Mohammadi-Nejad, G., Haynes, P. A., Hajirezaei, M. R., Sepehri, M. & Salekdeh, G. H., 1 Jan 2019, In : Environmental and Experimental Botany. 157, p. 197-210 14 p.Research output: Contribution to journal › Article
10
Citations
(Scopus)
Salinity-associated microRNAs and their potential roles in mediating salt tolerance in rice colonized by the endophytic root fungus Piriformospora indica
Kord, H., Fakheri, B., Ghabooli, M., Solouki, M., Emamjomeh, A., Khatabi, B., Sepehri, M., Salekdeh, G. H. & Ghaffari, M. R., Jul 2019, In : Functional and Integrative Genomics. 19, 4, p. 659-672 14 p.Research output: Contribution to journal › Article
2
Citations
(Scopus)
The comparative analysis of phenotypic and whole transcriptome gene expression data of ascites susceptible versus ascites resistant chickens
Hasanpur, K., Nassiri, M. & Hosseini Salekdeh, G., Feb 2019, In : Molecular Biology Reports. 46, 1, p. 793-804 12 p.Research output: Contribution to journal › Article
The quest for missing proteins in rice
Rahiminejad, M., Ledari, M. T., Mirzaei, M., Ghorbanzadeh, Z., Kavousi, K., Ghaffari, M. R., Haynes, P. A., Komatsu, S. & Salekdeh, G. H., 7 Jan 2019, In : Molecular Plant. 12, 1, p. 4-6 3 p.Research output: Contribution to journal › Article
3
Citations
(Scopus)
Transcriptomic analysis of Aegilops tauschii during long-term salinity stress
Mansouri, M., Naghavi, M. R., Alizadeh, H., Mohammadi-Nejad, G., Mousavi, S. A., Salekdeh, G. H. & Tada, Y., Jan 2019, In : Functional and Integrative Genomics. 19, 1, p. 13–28 16 p.Research output: Contribution to journal › Article
3
Citations
(Scopus)
Upregulation of proteolytic pathways and altered protein biosynthesis underlie retinal pathology in a mouse model of Alzheimer’s disease
Mirzaei, M., Pushpitha, K., Deng, L., Chitranshi, N., Gupta, V., Rajput, R., Mangani, A. B., Dheer, Y., Godinez, A., McKay, M., Kamath, K., Pascovici, D., Wu, J. X., Salekdeh, G. H., Karl, T., Haynes, P. A., Graham, S. L. & Gupta, V. K., Sep 2019, In : Molecular Neurobiology. 56, 9, p. 6017-6034 18 p.Research output: Contribution to journal › Article
2
Citations
(Scopus)
2018
17th Chromosome-Centric Human Proteome Project Symposium in Tehran
Meyfour, A., Pahlavan, S., Sobhanian, H. & Salekdeh, G. H., Apr 2018, In : Proteomics. 18, 7, 5 p., 1800012.Research output: Contribution to journal › Article
4
Citations
(Scopus)
A cold-adapted endoglucanase from camel rumen with high catalytic activity at moderate and low temperatures: an anomaly of truly cold-adapted evolution in a mesophilic environment
Khalili Ghadikolaei, K., Gharechahi, J., Haghbeen, K., Akbari Noghabi, K., Hosseini Salekdeh, G. & Shahbani Zahiri, H., Mar 2018, In : Extremophiles. 22, 2, p. 315-326 12 p.Research output: Contribution to journal › Article
6
Citations
(Scopus)
A computational method for prediction of xylanase enzymes activity in strains of Bacillus subtilis based on pseudo amino acid composition features
Ariaeenejad, S., Mousivand, M., Dezfouli, P. M., Hashemi, M., Kavousi, K. & Salekdeh, G. H., 22 Oct 2018, In : PLoS ONE. 13, 10, p. 1-16 16 p., e0205796.Research output: Contribution to journal › Article
Open Access
File
1
Citation
(Scopus)
9
Downloads
(Pure)
A metagenomic analysis of the camel rumen's microbiome identifies the major microbes responsible for lignocellulose degradation and fermentation
Gharechahi, J. & Salekdeh, G. H., 2 Aug 2018, In : Biotechnology for Biofuels. 11, p. 1-19 19 p., 216.Research output: Contribution to journal › Article
Open Access
File
13
Citations
(Scopus)
44
Downloads
(Pure)
Combining RNA-seq and proteomic profiling in cryopreserved human sperm exposed to sublethal stress: new biomarkers for stress-tolerance in sperm
Hezavehei, M., Shahverdi, A., Salekdeh, G. H., Mirzaei, M., Sharafi, M., Eftekhari-Yazdi, P., Nikmehr, B., Seifi, S. & Mirshahvaladi, S., Jul 2018, In : Human Reproduction. 33, Suppl. 1, p. 90-91 2 p., O-199.Research output: Contribution to journal › Meeting abstract
Discovery of novel cell surface markers for purification of embryonic dopamine progenitors for transplantation in Parkinson's disease animal models
Fathi, A., Mirzaei, M., Dolatyar, B., Sharifitabar, M., Bayat, M., Shahbazi, E., Lee, J., Javan, M., Zhang, S-C., Gupta, V., Lee, B., Haynes, P. A., Baharvand, H. & Salekdeh, G. H., 1 Sep 2018, In : Molecular and Cellular Proteomics. 17, 9, p. 1670-1684 15 p.Research output: Contribution to journal › Article
5
Citations
(Scopus)
Distinct changes in the proteome profile of endometrial tissues in polycystic ovary syndrome compared with healthy fertile women
Amjadi, F., Mehdizadeh, M., Ashrafi, M., Nasrabadi, D., Taleahmad, S., Mirzaei, M., Gupta, V., Salekdeh, G. H. & Aflatoonian, R., Aug 2018, In : Reproductive BioMedicine Online. 37, 2, p. 184-200 17 p.Research output: Contribution to journal › Article
9
Citations
(Scopus)
Distribution and development of molecularly distinct perineuronal nets in visual thalamus
Sabbagh, U., Monavarfeshani, A., Su, K., Zabet-Moghadam, M., Cole, J., Carnival, E., Su, J., Mirzaei, M., Gupta, V., Salekdeh, G. H. & Fox, M. A., Dec 2018, In : Journal of Neurochemistry. 147, 5, p. 626-646 21 p.Research output: Contribution to journal › Article
2
Citations
(Scopus)
Launching the C-HPP neXt-CP50 pilot project for functional characterization of identified proteins with no known function
Paik, Y-K., Lane, L., Kawamura, T., Chen, Y. J., Cho, J-Y., Labaer, J., Yoo, J. S., Domont, G., Corrales, F., Omenn, G. S., Archakov, A., Encarnación-Guevara, S., Lui, S., Salekdeh, G. H., Cho, J-Y., Kim, C-Y. & Overall, C. M., Dec 2018, In : Journal of Proteome Research. 17, 12, p. 4042-4050 9 p.Research output: Contribution to journal › Article
15
Citations
(Scopus)
Linking transcriptomics and proteomics in cryopreserved human sperm
Hezavehei, M., Mirzaei, M., Salekdeh, G. H., Shahverdi, A., Eftekhari-Yazdi, P. & Sharafi, M., Feb 2018, In : Cryobiology. 80, p. 175 1 p., S75.Research output: Contribution to journal › Meeting abstract
Metabolic signature of pluripotent stem cells
Taleahmad, S., Hassani, S. N., Salekdeh, G. H. & Baharvand, H., 2018, In : Cell Journal. 20, 3, p. 388-395 8 p.Research output: Contribution to journal › Article
Open Access
File
3
Citations
(Scopus)
14
Downloads
(Pure)
MicroRNA-340 inhibits the proliferation and promotes the apoptosis of colon cancer cells by modulating REV3L
Arivazhagan, R., Lee, J., Bayarsaikhan, D., Kwak, P., Son, M., Byun, K., Salekdeh, G. H. & Lee, B., 12 Jan 2018, In : Oncotarget. 9, 4, p. 5155-5168 14 p.Research output: Contribution to journal › Article
Open Access
File
8
Citations
(Scopus)
4
Downloads
(Pure)
Mining alfalfa (Medicago sativa L.) nodules for salinity tolerant non-rhizobial bacteria to improve growth of alfalfa under salinity stress
Noori, F., Etesami, H., Najafi Zarini, H., Khoshkholgh-Sima, N. A., Hosseini Salekdeh, G. & Alishahi, F., 30 Oct 2018, In : Ecotoxicology and Environmental Safety. 162, p. 129-138 10 p.Research output: Contribution to journal › Article
7
Citations
(Scopus)
Prospective isolation of ISL1+ cardiac progenitors from human ESCs for myocardial infarction therapy
Ghazizadeh, Z., Fattahi, F., Mirzaei, M., Bayersaikhan, D., Lee, J., Chae, S., Hwang, D., Byun, K., Tabar, M. S., Taleahmad, S., Mirshahvaladi, S., Shabani, P., Fonoudi, H., Haynes, P. A., Baharvand, H., Aghdami, N., Evans, T., Lee, B. & Salekdeh, G. H., 13 Mar 2018, In : Stem Cell Reports. 10, 3, p. 848-859 12 p.Research output: Contribution to journal › Article
Open Access
File
6
Citations
(Scopus)
12
Downloads
(Pure)
Stress preconditioning of sperm for cryopreservation: new approach based on proteomics characteristics
Hezavehei, M., Kouchesfahani, H. M., Salekdeh, G. H., Mirzaei, M., Sharafi, M., Eftekhari-Yazdi, P., Tobraggaleh, T. R. & Shahverdi, A., Feb 2018, In : Cryobiology. 80, p. 190 1 p., P42.Research output: Contribution to journal › Meeting abstract
Subcellular proteome landscape of human embryonic stem cells revealed missing membrane proteins
Weldemariam, M. M., Han, C-L., Shekari, F., Kitata, R. B., Chuang, C-Y., Hsu, W-T., Kuo, H-C., Choong, W-K., Sung, T-Y., He, F-C., Chung, M. C. M., Salekdeh, G. H. & Chen, Y-J., 2018, In : Journal of Proteome Research. 17, 12, p. 4138–4151 14 p.Research output: Contribution to journal › Article
7
Citations
(Scopus)
Surface markers of human embryonic stem cells: a meta analysis of membrane proteomics reports
Shekari, F., Han, C. L., Lee, J., Mirzaei, M., Gupta, V., Haynes, P. A., Lee, B., Baharvand, H., Chen, Y. J. & Hosseini Salekdeh, G., 2 Nov 2018, In : Expert Review of Proteomics. 15, 11, p. 911-922 12 p.Research output: Contribution to journal › Review article
2
Citations
(Scopus)
The Art of validating quantitative proteomics data
Handler, D. C., Pascovici, D., Mirzaei, M., Gupta, V., Salekdeh, G. H. & Haynes, P. A., Dec 2018, In : Proteomics. 18, 23, p. 1-6 6 p., 1800222.Research output: Contribution to journal › Article
1
Citation
(Scopus)
2017
Advanced glycation end-products produced systemically and by macrophages: a common contributor to inflammation and degenerative diseases
Byun, K., Yoo, Y. C., Son, M., Lee, J., Jeong, G-B., Park, Y. M., Salekdeh, G. H. & Lee, B., Sep 2017, In : Pharmacology and Therapeutics. 177, p. 44-55 12 p.Research output: Contribution to journal › Review article
Open Access
File
62
Citations
(Scopus)
114
Downloads
(Pure)
Age-related neurodegenerative disease associated pathways identified in retinal and vitreous proteome from human glaucoma eyes
Mirzaei, M., Gupta, V. B., Chick, J. M., Greco, T. M., Wu, Y., Chitranshi, N., Wall, R. V., Hone, E., Deng, L., Dheer, Y., Abbasi, M., Rezaeian, M., Braidy, N., You, Y., Salekdeh, G. H., Haynes, P. A., Molloy, M. P., Martins, R., Cristea, I. M., Gygi, S. P. & 2 others, , 4 Oct 2017, In : Scientific Reports. 7, 1, p. 1-16 16 p., 12685.Research output: Contribution to journal › Article
Open Access
File
23
Citations
(Scopus)
25
Downloads
(Pure)
A proteomics approach to discover drought tolerance proteins in wheat pollen grain at meiosis stage
Fotovat, R., Alikhani, M., Valizadeh, M., Mirzaei, M. & Salekdeh, G. H., 2017, In : Protein and peptide letters. 24, 1, p. 26-36 11 p.Research output: Contribution to journal › Article
4
Citations
(Scopus)
Chromosome-Centric Human Proteome Project allies with developmental biology: a case study of the role of y chromosome genes in organ development
Meyfour, A., Pooyan, P., Pahlavan, S., Rezaei-Tavirani, M., Gourabi, H., Baharvand, H. & Salekdeh, G. H., 1 Dec 2017, In : Journal of Proteome Research. 16, 12, p. 4259-4272 14 p.Research output: Contribution to journal › Review article
7
Citations
(Scopus)
Cold-induced physiological and biochemical responses of three grapevine cultivars differing in cold tolerance
Beheshti Rooy, S. S., Hosseini Salekdeh, G., Ghabooli, M., Gholami, M. & Karimi, R., Dec 2017, In : Acta Physiologiae Plantarum. 39, 12, 13 p., 264.Research output: Contribution to journal › Article
5
Citations
(Scopus)
Drought responsive microRNAs in two barley cultivars differing in their level of sensitivity to drought stress
Fard, E. M., Bakhshi, B., Keshavarznia, R., Nikpay, N., Shahbazi, M. & Salekdeh, G. H., Sep 2017, In : Plant Physiology and Biochemistry. 118, p. 121-129 9 p.Research output: Contribution to journal › Article
11
Citations
(Scopus)
Drought tolerance in four-day-old seedlings of a drought-sensitive cultivar of wheat
Koobaz, P., Ghanati, F., Hosseini Salekdeh, G., Moradi, F. & Hadavand, H., 2017, In : Journal of Plant Nutrition. 40, 4, p. 574-583 10 p.Research output: Contribution to journal › Article
5
Citations
(Scopus)
Effect of gradual and shock chilling stress on abscisic acid, soluble sugars and antioxidant enzymes changes in 'Sultana' grapevine
Beheshti Rooy, S. S., Hosseini Salekdeh, G., Ghabooli, M., Gholami, M., Mohsenifard, E. & Karimi, R., 2017, In : Iranian Journal of Plant Physiology. 7, 4, p. 2211-2224 14 p.Research output: Contribution to journal › Article
IMG/VR: a database of cultured and uncultured DNA viruses and retroviruses
Paez-Espino, D., Chen, I. -M. A., Palaniappan, K., Ratner, A., Chu, K., Szeto, E., Pillay, M., Huang, J., Markowitz, V. M., Nielsen, T., Huntemann, M., Reddy, T. B. K., Pavlopoulos, G. A., Sullivan, M. B., Campbell, B. J., Chen, F., McMahon, K., Hallam, S. J., Denef, V., Cavicchioli, R. & 12 others, , Jan 2017, In : Nucleic acids research. 45, D1, p. D457-D465 9 p.Research output: Contribution to journal › Article
Open Access
File
52
Citations
(Scopus)
3
Downloads
(Pure)
Low focal adhesion signaling promotes ground state pluripotency of mouse embryonic stem cells
Taleahmad, S., Mirzaei, M., Samadian, A., Hassani, S. N., Haynes, P. A., Salekdeh, G. H. & Baharvand, H., 2017, In : Journal of Proteome Research. 16, 10, p. 3585-3595 11 p.Research output: Contribution to journal › Article
11
Citations
(Scopus)
Machine learning and network analysis of molecular dynamics trajectories reveal two chains of red/ox-specific residue interactions in human protein disulfide isomerase
Karamzadeh, R., Karimi-Jafari, M. H., Sharifi-Zarchi, A., Chitsaz, H., Salekdeh, G. H. & Moosavi-Movahedi, A. A., 16 Jun 2017, In : Scientific Reports. 7, 11 p., 3666.Research output: Contribution to journal › Article
Open Access
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7
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(Scopus)
MicroRNAs regulate the main events in rice drought stress response by manipulating the water supply to shoots
Fard, E. M., Bakhshi, B., Farsi, M., Kakhki, A. M., Nikpay, N., Ebrahimi, M. A., Mardi, M. & Salekdeh, G. H., 2017, In : Molecular BioSystems. 13, 11, p. 2289-2302 14 p.Research output: Contribution to journal › Article
2
Citations
(Scopus)