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2016
14 Citations (Scopus)

Revealing colonisation and biofilm formation of an adherent coal seam associated microbial community on a coal surface

Vick, S. H. W., Tetu, S. G., Sherwood, N., Pinetown, K., Sestak, S., Vallotton, P., Elbourne, L. D. H., Greenfield, P., Johnson, E., Barton, D., Midgley, D. J. & Paulsen, I. T., 15 Apr 2016, In : International Journal of Coal Geology. 160-161, p. 42-50 9 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)
2015
Open Access
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9 Citations (Scopus)
16 Downloads (Pure)
Open Access
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11 Citations (Scopus)
14 Downloads (Pure)

Bacillus cereus efflux protein BC3310 - : a multidrug transporter of the unknown major facilitator family, UMF-2

Kroeger, J. K., Hassan, K., Vörös, A., Simm, R., Saidijam, M., Bettaney, K. E., Bechthold, A., Paulsen, I. T., Henderson, P. J. F. & Kolstø, A. B., 2015, In : Frontiers in Microbiology. 6, 12 p., 1063.

Research output: Contribution to journalArticle

Open Access
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4 Citations (Scopus)
12 Downloads (Pure)

Draft genome of Australian environmental strain WM 09.24 of the opportunistic human pathogen Scedosporium aurantiacum

Pérez-Bercoff, Å., Papanicolaou, A., Ramsperger, M., Kaur, J., Patel, H. R., Harun, A., Duan, S. Y., Elbourne, L., Bouchara, J. P., Paulsen, I. T., Nevalainen, H., Meyer, W. & Huttley, G. A., 2015, In : Genome Announcements. 3, 1, p. e01526-1-e01526-2 2 p., e01526-14.

Research output: Contribution to journalArticle

Open Access
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14 Citations (Scopus)
15 Downloads (Pure)

Genetically and phenotypically distinct Pseudomonas aeruginosa cystic fibrosis isolates share a core proteomic signature

Penesyan, A., Kumar, S. S., Kamath, K., Shathili, A. M., Venkatakrishnan, V., Krisp, C., Packer, N. H., Molloy, M. P. & Paulsen, I. T., 2 Oct 2015, In : PLoS ONE. 10, 10, p. 1-26 26 p., e0138527.

Research output: Contribution to journalArticle

Open Access
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8 Citations (Scopus)
15 Downloads (Pure)

Genomic analyses of Clostridium perfringens isolates from five toxinotypes

Hassan, K. A., Elbourne, L. D. H., Tetu, S. G., Melville, S. B., Rood, J. I. & Paulsen, I. T., 1 May 2015, In : Research in Microbiology. 166, 4, p. 255-263 9 p.

Research output: Contribution to journalArticle

25 Citations (Scopus)

Homologs of the Acinetobacter baumannii acei transporter represent a new family of bacterial multidrug efflux systems

Hassan, K. A., Liu, Q., Henderson, P. J. F. & Paulsen, I. T., 10 Feb 2015, In : mBio. 6, 1, p. 1-5 5 p., e01982.

Research output: Contribution to journalArticle

Open Access
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45 Citations (Scopus)
4 Downloads (Pure)

Insights on virulence from the complete genome of Staphylococcus capitis

Cameron, D. R., Jiang, J. H., Hassan, K. A., Elbourne, L. D. H., Tuck, K. L., Paulsen, I. T. & Peleg, A. Y., 23 Sep 2015, In : Frontiers in Microbiology. 6, p. 1-12 12 p., 980.

Research output: Contribution to journalArticle

Open Access
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22 Citations (Scopus)
15 Downloads (Pure)

One-Step Protein Conjugation to Upconversion Nanoparticles

Lu, J., Chen, Y., Liu, D., Ren, W., Lu, Y., Shi, Y., Piper, J., Paulsen, I. & Jin, D., 20 Oct 2015, In : Analytical Chemistry. 87, 20, p. 10406-10413 8 p.

Research output: Contribution to journalArticle

31 Citations (Scopus)

Phenotypic profiling of Scedosporium aurantiacum, an opportunistic pathogen colonizing human lungs

Kaur, J., Duan, S. Y., Vaas, L. A. I., Penesyan, A., Meyer, W., Paulsen, I. T. & Nevalainen, H., 26 Mar 2015, In : PLoS ONE. 10, 3, p. 1-14 14 p., e0122354.

Research output: Contribution to journalArticle

Open Access
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12 Citations (Scopus)
16 Downloads (Pure)
Open Access
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18 Citations (Scopus)
6 Downloads (Pure)

Spatially extensive microbial biogeography of the Indian Ocean provides insights into the unique community structure of a pristine coral atoll

Jeffries, T. C., Ostrowski, M., Williams, R. B., Xie, C., Jensen, R. M., Grzymski, J. J., Senstius, S. J., Givskov, M., Hoeke, R., Philip, G. K., Neches, R. Y., Drautz-Moses, D. I., Chenard, C., Paulsen, I. T. & Lauro, F. M., 20 Oct 2015, In : Scientific Reports. 5, p. 1-13 13 p., 15383.

Research output: Contribution to journalArticle

Open Access
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12 Citations (Scopus)
37 Downloads (Pure)

The Rsm regulon of plant growth-promoting Pseudomonas fluorescens SS101: role of small RNAs in regulation of lipopeptide biosynthesis

Song, C., van der Voort, M., van de Mortel, J., Hassan, K. A., Elbourne, L. D. H., Paulsen, I. T., Loper, J. E. & Raaijmakers, J. M., 1 Mar 2015, In : Microbial Biotechnology. 8, 2, p. 296-310 15 p.

Research output: Contribution to journalArticle

Open Access
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7 Citations (Scopus)
4 Downloads (Pure)
2014

Addition of Escherichia coli K-12 growth observation and gene essentiality data to the ecocyc database

Mackie, A., Paley, S., Keseler, I. M., Shearer, A., Paulsen, I. T. & Karp, P. D., Mar 2014, In : Journal of Bacteriology. 196, 5, p. 982-988 7 p.

Research output: Contribution to journalArticle

Open Access
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6 Citations (Scopus)
1 Downloads (Pure)

A genome-scale metabolic flux model of Escherichia coli K-12 derived from the EcoCyc database

Weaver, D. S., Keseler, I. M., Mackie, A., Paulsen, I. T. & Karp, P. D., 30 Jun 2014, In : BMC Systems Biology. 8, p. 1-24 24 p., 79.

Research output: Contribution to journalArticle

Open Access
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22 Citations (Scopus)
18 Downloads (Pure)

Comparative analysis of surface-exposed virulence factors of Acinetobacter baumannii

Eijkelkamp, B. A., Stroeher, U. H., Hassan, K. A., Paulsen, I. T. & Brown, M. H., 25 Nov 2014, In : BMC Genomics. 15, p. 1-12 12 p., 1020.

Research output: Contribution to journalArticle

Open Access
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51 Citations (Scopus)
10 Downloads (Pure)

Draft genome sequence of Bacillus alcalophilus AV1934, a classic alkaliphile isolated from human feces in 1934

Attie, O., Jayaprakash, A., Shah, H., Paulsen, I. T., Morino, M., Takahashi, Y., Narumi, I., Sachidanandam, R., Satoh, K., Ito, M. & Krulwich, T. A., 2014, In : Genome Announcements. 2, 6, p. 1-2 2 p., e01175-14.

Research output: Contribution to journalArticle

Open Access
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3 Citations (Scopus)
3 Downloads (Pure)

Genome sequence of the neurotoxigenic Clostridium butyricum strain 5521

Hassan, K. A., Elbourne, L. D. H., Tetu, S. G., Johnson, E. A. & Paulsen, I. T., 2014, In : Genome Announcements. 2, 3, p. 1-2 2 p., e00632-14.

Research output: Contribution to journalArticle

5 Citations (Scopus)

SecDF as part of the sec-translocase facilitates efficient secretion of Bacillus cereus toxins and cell wall-associated proteins

Vörös, A., Simm, R., Slamti, L., McKay, M. J., Hegna, I. K., Nielsen-LeRoux, C., Hassan, K. A., Paulsen, I. T., Lereclus, D., Okstad, O. A., Molloy, M. P. & Kolstø, A. B., 1 Aug 2014, In : PLoS ONE. 9, 8, p. 1-17 17 p., e103326.

Research output: Contribution to journalArticle

Open Access
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10 Citations (Scopus)
14 Downloads (Pure)
Open Access
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3 Citations (Scopus)
21 Downloads (Pure)

The Common Oceanographer: Crowdsourcing the Collection of Oceanographic Data

Lauro, F. M., Senstius, S. J., Cullen, J., Neches, R., Jensen, R. M., Brown, M. V., Darling, A. E., Givskov, M., McDougald, D., Hoeke, R., Ostrowski, M., Philip, G. K., Paulsen, I. T. & Grzymski, J. J., 2014, In : PLoS Biology. 12, 9, p. 1-5 5 p.

Research output: Contribution to journalArticle

Open Access
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16 Citations (Scopus)
15 Downloads (Pure)

The EcoCyc database

Karp, P. D., Weaver, D., Paley, S., Fulcher, C., Kubo, A., Kothari, A., Krummenacker, M., Subhraveti, P., Weerasinghe, D., Gama-Castro, S., Huerta, A. M., Muñiz-Rascado, L., Bonavides-Martinez, C., Weiss, V., Peralta-Gil, M., Santos-Zavaleta, A., Schröder, I., Mackie, A., Gunsalus, R., Collado-Vides, J. & 2 others, Keseler, I. M. & Paulsen, I., 2014, In : EcoSal Plus. 6, 1, p. 1-13 13 p.

Research output: Contribution to journalArticle

Open Access
33 Citations (Scopus)
2013
34 Citations (Scopus)
23 Citations (Scopus)

Dead end metabolites - defining the known unknowns of the E. coli metabolic network

Mackie, A., Keseler, I. M., Nolan, L., Karp, P. D. & Paulsen, I. T., 23 Sep 2013, In : PLoS ONE. 8, 9, p. 1-11 11 p., e75210.

Research output: Contribution to journalArticle

Open Access
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14 Citations (Scopus)
9 Downloads (Pure)

EcoCyc: fusing model organism databases with systems biology

Keseler, I. M., Mackie, A., Peralta-Gil, M., Santos-Zavaleta, A., Gama-Castro, S., Bonavides-Martínez, C., Fulcher, C., Huerta, A. M., Kothari, A., Krummenacker, M., Latendresse, M., Muñiz-Rascado, L., Ong, Q., Paley, S., Schröder, I., Shearer, A. G., Subhraveti, P., Travers, M., Weerasinghe, D., Weiss, V. & 4 others, Collado-Vides, J., Gunsalus, R. P., Paulsen, I. & Karp, P. D., 1 Jan 2013, In : Nucleic Acids Research. 41, D1, p. D605-D612 8 p.

Research output: Contribution to journalArticle

Open Access
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386 Citations (Scopus)
4 Downloads (Pure)

Effect of tannic acid on the transcriptome of the soil bacterium Pseudomonas protegens Pf-5

Lim, C. K., Penesyan, A., Hassan, K. A., Loper, J. E. & Paulsen, I. T., 2013, In : Applied and Environmental Microbiology. 79, 9, p. 3141-3145 5 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Genes expressed by the biological control bacterium Pseudomonas protegens Pf-5 on seed surfaces under the control of the global regulators GacA and RpoS

Kidarsa, T. A., Shaffer, B. T., Goebel, N. C., Roberts, D. P., Buyer, J. S., Johnson, A., Kobayashi, D. Y., Zabriskie, T. M., Paulsen, I. & Loper, J. E., Mar 2013, In : Environmental microbiology. 15, 3, p. 716-735 20 p.

Research output: Contribution to journalArticle

25 Citations (Scopus)

Genome sequence of the group III Clostridium botulinum strain Eklund-C

Hassan, K. A., Tetu, S. G., Elbourne, L. D. H., Johnson, E. A. & Paulsen, I. T., 2013, In : Genome Announcements. 1, 2, p. 1-2 2 p., e00044-13.

Research output: Contribution to journalArticle

6 Citations (Scopus)

H-NS Plays a role in expression of Acinetobacter baumannii virulence features

Eijkelkamp, B. A., Stroeher, U. H., Hassan, K. A., Elbourne, L. D. H., Paulsen, I. T. & Brown, M. H., Jul 2013, In : Infection and Immunity. 81, 7, p. 2574-2583 10 p.

Research output: Contribution to journalArticle

Open Access
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48 Citations (Scopus)
15 Downloads (Pure)

Impact of DNA damaging agents on genome-wide transcriptional profiles in two marine Synechococcus species

Tetu, S. G., Johnson, D. A., Varkey, D., Phillippy, K., Stuart, R. K., Dupont, C. L., Hassan, K. A., Palenik, B. & Paulsen, I. T., 2013, In : Frontiers in Microbiology. 4, p. 1-15 15 p., 232.

Research output: Contribution to journalArticle

Open Access
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11 Citations (Scopus)
5 Downloads (Pure)

Life in the dark: Metagenomic evidence that a microbial slime community is driven by inorganic nitrogen metabolism

Tetu, S. G., Breakwell, K., Elbourne, L. D. H., Holmes, A. J., Gillings, M. R. & Paulsen, I. T., Jun 2013, In : ISME Journal. 7, 6, p. 1227-1236 10 p.

Research output: Contribution to journalArticle

29 Citations (Scopus)

Maintenance of essential amino acid synthesis pathways in the Blattabacterium cuenoti symbiont of a wood-feeding cockroach

Tokuda, G., Elbourne, L. D. H., Kinjo, Y., Saitoh, S., Sabree, Z., Hojo, M., Yamada, A., Hayashi, Y., Shigenobu, S., Bandi, C., Paulsen, I. T., Watanabe, H. & Lo, N., 23 Jun 2013, In : Biology Letters. 9, 3, p. 1-4 4 p., 20121153.

Research output: Contribution to journalArticle

26 Citations (Scopus)

PA506, a conjugative plasmid of the plant epiphyte Pseudomonas fluorescens A506

Stockwell, V. O., Davis, E. W., Carey, A., Shaffer, B. T., Mavrodi, D. V., Hassan, K. A., Hockett, K., Thomashow, L. S., Paulsen, I. T. & Lopera, J. E., 2013, In : Applied and Environmental Microbiology. 79, 17, p. 5272-5282 11 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Sequences of two related multiple antibiotic resistance virulence plasmids sharing a unique IS26-related molecular signature isolated from different Escherichia coli pathotypes from different hosts

Venturini, C., Hassan, K. A., Chowdhury, P. R., Paulsen, I. T., Walker, M. J. & Djordjevic, S. P., 4 Nov 2013, In : PLoS ONE. 8, 11, p. 1-14 14 p., e78862.

Research output: Contribution to journalArticle

25 Citations (Scopus)

Single-step selection of drug resistant Acinetobacter baylyi ADP1 mutants reveals a functional redundancy in the recruitment of multidrug efflux systems

Brzoska, A. J., Hassan, K. A., de Leon, E. J., Paulsen, I. T. & Lewis, P. J., 7 Feb 2013, In : PLoS ONE. 8, 2, p. 1-11 11 p., e56090.

Research output: Contribution to journalArticle

Open Access
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13 Citations (Scopus)
8 Downloads (Pure)

Stress effects caused by the expression of a mutant cellobiohydrolase I and proteasome inhibition in Trichoderma reesei Rut-C30

Kautto, L., Grinyer, J., Paulsen, I., Tetu, S., Pillai, A., Pardiwalla, S., Sezerman, U., Akcapinar, G. B., Bergquist, P., Te'o, J. & Nevalainen, H., 25 Jan 2013, In : New Biotechnology. 30, 2, p. 183-191 9 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

The complete genome and phenome of a community-acquired Acinetobacter baumannii

Farrugia, D. N., Elbourne, L. D. H., Hassan, K. A., Eijkelkamp, B. A., Tetu, S. G., Brown, M. H., Shah, B. S., Peleg, A. Y., Mabbutt, B. C. & Paulsen, I. T., 19 Mar 2013, In : PLoS ONE. 8, 3, p. 1-13 13 p., e58628.

Research output: Contribution to journalArticle

Open Access
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42 Citations (Scopus)
42 Downloads (Pure)

The effect of zinc limitation on the transcriptome of Pseudomonas protegens Pf-5

Lim, C. K., Hassan, K. A., Penesyan, A., Loper, J. E. & Paulsen, I. T., Mar 2013, In : Environmental microbiology. 15, 3, p. 702-715 14 p.

Research output: Contribution to journalArticle

27 Citations (Scopus)

Transcriptomic and biochemical analyses identify a family of chlorhexidine efflux proteins

Hassan, K. A., Jackson, S. M., Penesyan, A., Patching, S. G., Tetu, S. G., Eijkelkamp, B. A., Brown, M. H., Henderson, P. J. F. & Paulsen, I. T., 10 Dec 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 50, p. 20254-20259 6 p.

Research output: Contribution to journalArticle

61 Citations (Scopus)
2012

Analysis of two marine metagenomes reveals the diversity of plasmids in oceanic environments

Ma, Y., Paulsen, I. T. & Palenik, B., Feb 2012, In : Environmental microbiology. 14, 2, p. 453-466 14 p.

Research output: Contribution to journalArticle

26 Citations (Scopus)

Comparative genomics of plant-associated Pseudomonas spp. insights into diversity and inheritance of traits involved in multitrophic interactions

Loper, J. E., Hassan, K. A., Mavrodi, D. V., Davis, E. W., Lim, C. K., Shaffer, B. T., Elbourne, L. D. H., Stockwell, V. O., Hartney, S. L., Breakwell, K., Henkels, M. D., Tetu, S. G., Rangel, L. I., Kidarsa, T. A., Wilson, N. L., van de Mortel, J. E., Song, C., Blumhagen, R., Radune, D., Hostetler, J. B. & 15 others, Brinkac, L. M., Durkin, A. S., Kluepfel, D. A., Wechter, W. P., Anderson, A. J., Kim, Y. C., Pierson, L. S., Pierson, E. A., Lindow, S. E., Kobayashi, D. Y., Raaijmakers, J. M., Weller, D. M., Thomashow, L. S., Allen, A. E. & Paulsen, I. T., Jul 2012, In : PLoS Genetics. 8, 7, p. 1-27 27 p., e1002784.

Research output: Contribution to journalArticle

326 Citations (Scopus)

Genetic identification of a high-affinity Ni transporter and the transcriptional response to Ni deprivation in synechococcus sp. Strain WH8102

Dupont, C. L., Johnson, D. A., Phillippy, K., Paulsen, I. T., Brahamsha, B. & Palenik, B., Nov 2012, In : Applied and Environmental Microbiology. 78, 22, p. 7822-7832 11 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)

Genomic Analysis Reveals Multiple [FeFe] Hydrogenases and Hydrogen Sensors Encoded by Treponemes from the H-2-Rich Termite Gut

Ballor, N. R., Paulsen, I. & Leadbetter, J. R., Feb 2012, In : Microbial Ecology. 63, 2, p. 282-294 13 p.

Research output: Contribution to journalArticle

17 Citations (Scopus)

Geochemical and microbial diversity of bundera sinkhole, an anchialine system in the eastern Indian Ocean

Humphreys, W., Tetu, S., Elbourne, L., Gillings, M., Seymour, J., Mitchell, J. & Paulsen, I., Sep 2012, In : Natura Croatica. 21, Suppl.1, p. 59-63 5 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)

Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic

Allen, L. Z., Allen, E. E., Badger, J. H., McCrow, J. P., Paulsen, I. T., Elbourne, L. D., Thiagarajan, M., Rusch, D. B., Nealson, K. H., Williamson, S. J., Venter, J. C. & Allen, A. E., Jul 2012, In : ISME Journal. 6, 7, p. 1403-1414 12 p.

Research output: Contribution to journalArticle

69 Citations (Scopus)

pEl1573 Carrying bla(IMP-4), from Sydney, Australia, Is Closely Related to Other IncL/M Plasmids

Partridge, S. R., Ginn, A. N., Paulsen, I. T. & Iredell, J. R., Nov 2012, In : Antimicrobial Agents and Chemotherapy. 56, 11, p. 6029-6032 4 p.

Research output: Contribution to journalArticle

42 Citations (Scopus)

pJIE137 carrying bla CTX-M-62 is closely related to p271A carrying bla NDM-1

Partridge, S. R., Paulsen, I. T. & Iredell, J. R., Apr 2012, In : Antimicrobial Agents and Chemotherapy. 56, 4, p. 2166-2168 3 p.

Research output: Contribution to journalArticle

19 Citations (Scopus)