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2012

Resolving low-expression cell surface antigens by time-gated orthogonal scanning automated microscopy

Lu, J., Martin, J., Lu, Y., Zhao, J., Yuan, J., Ostrowski, M., Paulsen, I., Piper, J. A. & Jin, D., 20 Nov 2012, In : Analytical Chemistry. 84, 22, p. 9674-9678 5 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)

The effect of iron limitation on the transcriptome and proteome of Pseudomonas fluorescens Pf-5

Lim, C. K., Hassan, K. A., Tetu, S. G., Loper, J. E. & Paulsen, I. T., 18 Jun 2012, In : PLoS ONE. 7, 6, p. 1-18 18 p., e39139.

Research output: Contribution to journalArticle

Open Access
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42 Citations (Scopus)
14 Downloads (Pure)
2011

Adherence and motility characteristics of clinical Acinetobacter baumannii isolates

Eijkelkamp, B. A., Stroeher, U. H., Hassan, K. A., Papadimitrious, M. S., Paulsen, I. T. & Brown, M. H., Oct 2011, In : FEMS Microbiology Letters. 323, 1, p. 44-51 8 p.

Research output: Contribution to journalArticle

87 Citations (Scopus)

Bacterial subfamily of LuxR regulators that respond to plant compounds

Subramoni, S., Gonzalez, J. F., Johnson, A., Péchy-Tarr, M., Rochat, L., Paulsen, I., Loper, J. E., Keel, C. & Venturi, V., Jul 2011, In : Applied and Environmental Microbiology. 77, 13, p. 4579-4588 10 p.

Research output: Contribution to journalArticle

48 Citations (Scopus)

Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris

Berka, R. M., Grigoriev, I. V., Otillar, R., Salamov, A., Grimwood, J., Reid, I., Ishmael, N., John, T., Darmond, C., Moisan, M. C., Henrissat, B., Coutinho, P. M., Lombard, V., Natvig, D. O., Lindquist, E., Schmutz, J., Lucas, S., Harris, P., Powlowski, J., Bellemare, A. & 19 others, Taylor, D., Butler, G., De Vries, R. P., Allijn, I. E., Van Den Brink, J., Ushinsky, S., Storms, R., Powell, A. J., Paulsen, I. T., Elbourne, L. D. H., Baker, S. E., Magnuson, J., Laboissiere, S., Clutterbuck, A. J., Martinez, D., Wogulis, M., De Leon, A. L., Rey, M. W. & Tsang, A., Oct 2011, In : Nature Biotechnology. 29, 10, p. 922-929 8 p.

Research output: Contribution to journalArticle

239 Citations (Scopus)

Complete sequence of pJIE143, a pir-type plasmid carrying ISEcp1-bla CTX-M-15 from an Escherichia coli ST131 isolate

Partridge, S. R., Ellem, J. A., Tetu, S. G., Zong, Z., Paulsen, I. T. & Iredell, J. R., Dec 2011, In : Antimicrobial Agents and Chemotherapy. 55, 12, p. 5933-5935 3 p.

Research output: Contribution to journalArticle

34 Citations (Scopus)

Crystal structure of an integron gene cassette-associated protein from Vibrio cholerae identifies a cationic drug-binding module

Deshpande, C. N., Harrop, S. J., Boucher, Y., Hassan, K. A., Leo, R. D., Xu, X., Cui, H., Savchenko, A., Chang, C., Labbate, M., Paulsen, I. T., Stokes, H. W., Curmi, P. M. G. & Mabbutt, B. C., 2011, In : PLoS ONE. 6, 3, p. 1-11 11 p., e16934.

Research output: Contribution to journalArticle

8 Citations (Scopus)
6 Citations (Scopus)

EcoCyc: a comprehensive database of Escherichia coli biology

Keseler, I. M., Collado-Vides, J., Santos-Zavaleta, A., Peralta-Gil, M., Gama-Castro, S., Muniz-Rascado, L., Bonavides-Martinez, C., Paley, S., Krummenacker, M., Altman, T., Kaipa, P., Spaulding, A., Pacheco, J., Latendresse, M., Fulcher, C., Sarker, M., Shearer, A. G., Mackie, A., Paulsen, I., Gunsalus, R. P. & 1 others, Karp, P. D., Jan 2011, In : Nucleic Acids Research. 39, SUPPL. 1, p. D583–D590 8 p.

Research output: Contribution to journalArticle

Open Access
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312 Citations (Scopus)
2 Downloads (Pure)

Genome of alkaliphilic Bacillus pseudofirmus OF4 reveals adaptations that support the ability to grow in an external pH range from 7.5 to 11.4

Janto, B., Ahmed, A., Ito, M., Liu, J., Hicks, D. B., Pagni, S., Fackelmayer, O. J., Smith, T. A., Earl, J., Elbourne, L. D. H., Hassan, K., Paulsen, I. T., Kolstø, A. B., Tourasse, N. J., Ehrlich, G. D., Boissy, R., Ivey, D. M., Li, G., Xue, Y., Ma, Y. & 2 others, Hu, F. Z. & Krulwich, T. A., Dec 2011, In : Environmental microbiology. 13, 12, p. 3289-3309 21 p.

Research output: Contribution to journalArticle

45 Citations (Scopus)

Genome sequences of the biotechnologically important Bacillus megaterium Strains QM B1551 and DSM319

Eppinger, M., Bunk, B., Johns, M. A., Edirisinghe, J. N., Kutumbaka, K. K., Koenig, S. S. K., Creasy, H. H., Rosovitz, M. J., Riley, D. R., Daugherty, S., Martin, M., Elbourne, L. D. H., Paulsen, I., Biedendieck, R., Braun, C., Grayburn, S., Dhingra, S., Lukyanchuk, V., Ball, B., Ul-Qamar, R. & 5 others, Seibe, J., Bremer, E., Jahn, D., Ravel, J. & Vary, P. S., Aug 2011, In : Journal of Bacteriology. 193, 16, p. 4199-4213 15 p.

Research output: Contribution to journalArticle

105 Citations (Scopus)

Investigation of the human pathogen Acinetobacter baumannii under iron limiting conditions

Eijkelkamp, B. A., Hassan, K. A., Paulsen, I. T. & Brown, M. H., 23 Feb 2011, In : BMC Genomics. 12, p. 1-14 14 p., 126.

Research output: Contribution to journalArticle

Open Access
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113 Citations (Scopus)
15 Downloads (Pure)

Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics

Gobler, C. J., Berry, D. L., Dyhrman, S. T., Wilhelm, S. W., Salamov, A., Lobanov, A. V., Zhang, Y., Collier, J. L., Wurch, L. L., Kustka, A. B., Dill, B. D., Shah, M., VerBerkmoes, N. C., Kuo, A., Terry, A., Pangilinan, J., Lindquist, E. A., Lucas, S., Paulsen, I. T., Hattenrath-Lehmann, T. K. & 13 others, Talmage, S. C., Walker, E. A., Koch, F., Burson, A. M., Marcoval, M. A., Tang, Y. Z., LeCleir, G. R., Coyne, K. J., Berg, G. M., Bertrand, E. M., Saito, M. A., Gladyshev, V. N. & Grigoriev, I. V., 15 Mar 2011, In : Proceedings of the National Academy of Sciences of the United States of America. 108, 11, p. 4352-4357 6 p.

Research output: Contribution to journalArticle

168 Citations (Scopus)

Roles of DHA2 family transporters in drug resistance and iron homeostasis in Acinetobacter spp.

Hassan, K. A., Brzoska, A. J., Wilson, N. L., Eijkelkamp, B. A., Brown, M. H. & Paulsen, I. T., Apr 2011, In : Journal of Molecular Microbiology and Biotechnology. 20, 2, p. 116-124 9 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)

Selection in coastal Synechococcus (cyanobacteria) populations evaluated from environmental metagenomes

Tai, V., Poon, A. F. Y., Paulsen, I. T. & Palenik, B., 9 Sep 2011, In : PLoS ONE. 6, 9, p. 1-14 14 p., e24249.

Research output: Contribution to journalArticle

Open Access
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14 Citations (Scopus)
9 Downloads (Pure)

Structural and functional analysis of the type III secretion system from Pseudomonas fluorescens Q8r1-96

Mavrodi, D. V., Joe, A., Mavrodi, O. V., Hassan, K. A., Weller, D. M., Paulsen, I. T., Loper, J. E., Alfano, J. R. & Thomashow, L. S., Jan 2011, In : Journal of Bacteriology. 193, 1, p. 177-189 13 p.

Research output: Contribution to journalArticle

34 Citations (Scopus)
2010

Complete genome sequence of the multiresistant taxonomic outlier Pseudomonas aeruginosa PA7

Roy, P. H., Tetu, S. G., Larouche, A., Elbourne, L., Tremblay, S., Ren, Q., Dodson, R., Harkins, D., Shay, R., Watkins, K., Mahamoud, Y. & Paulsen, I. T., 22 Jan 2010, In : PLoS ONE. 5, 1, p. 1-10 10 p., e8842.

Research output: Contribution to journalArticle

141 Citations (Scopus)

Computational prediction of the osmoregulation network in Synechococcus sp. WH8102

Mao, X., Olman, V., Stuart, R., Paulsen, I. T., Palenik, B. & Xu, Y., 10 May 2010, In : BMC Genomics. 11, p. 1-15 15 p., 291.

Research output: Contribution to journalArticle

Open Access
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11 Citations (Scopus)
5 Downloads (Pure)

Inactivation of the GacA response regulator in Pseudomonas fluorescens Pf-5 has far-reaching transcriptomic consequences

Hassan, K. A., Johnson, A., Shaffer, B. T., Ren, Q., Kidarsa, T. A., Elbourne, L. D. H., Hartney, S., Duboy, R., Goebel, N. C., Zabriskie, T. M., Paulsen, I. T. & Loper, J. E., Apr 2010, In : Environmental microbiology. 12, 4, p. 899-915 17 p.

Research output: Contribution to journalArticle

98 Citations (Scopus)

PtrA is required for coordinate regulation of gene expression during phosphate stress in a marine Synechococcus

Ostrowski, M., Mazard, S., Tetu, S. G., Phillippy, K., Johnson, A., Palenik, B., Paulsen, I. T. & Scanlan, D. J., Jul 2010, In : ISME Journal. 4, 7, p. 908-921 14 p.

Research output: Contribution to journalArticle

30 Citations (Scopus)

Pumping out biocides - cause for concern?

Hassan, K. A., Baltzer, S. A., Paulsen, I. T. & Brown, M., 2010, In : Microbiology Australia. 31, 4, p. 178-181 4 p.

Research output: Contribution to journalArticle

2009

Coastal strains of marine Synechococcus species exhibit increased tolerance to copper shock and a distinctive transcriptional response relative to those of open-ocean strains

Stuart, R. K., Dupont, C. L., Johnson, D. A., Paulsen, I. T. & Palenik, B., Aug 2009, In : Applied and Environmental Microbiology. 75, 15, p. 5047-5057 11 p.

Research output: Contribution to journalArticle

46 Citations (Scopus)

Coastal Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity

Palenik, B., Ren, Q., Tai, V. & Paulsen, I. T., Feb 2009, In : Environmental microbiology. 11, 2, p. 349-359 11 p.

Research output: Contribution to journalArticle

65 Citations (Scopus)

EcoCyc: a comprehensive view of Escherichia coli biology

Keseler, I. M., Bonavides-Martínez, C., Collado-Vides, J., Gama-Castro, S., Gunsalus, R. P., Johnson, D. A., Krummenacker, M., Nolan, L. M., Paley, S., Paulsen, I. T., Peralta-Gil, M., Santos-Zavaleta, A., Shearer, A. G. & Karp, P. D., 2009, In : Nucleic Acids Research. 37, SUPPL. 1, p. D464-D470 7 p.

Research output: Contribution to journalArticle

Open Access
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289 Citations (Scopus)
2 Downloads (Pure)

Genome degradation in Brucella ovis corresponds with narrowing of its host range and tissue tropism

Tsolis, R. M., Seshadri, R., Santos, R. L., Sangari, F. J., García Lobo, J. M., de Jong, M. F., Ren, Q., Myers, G., Brinkac, L. M., Nelson, W. C., DeBoy, R. T., Angiuoli, S., Khouri, H., Dimitrov, G., Robinson, J. R., Mulligan, S., Walker, R. L., Elzer, P. E., Hassan, K. A. & Paulsen, I. T., 13 May 2009, In : PLoS ONE. 4, 5, p. 1-9 9 p., e5519.

Research output: Contribution to journalArticle

73 Citations (Scopus)

Genome sequence of Azotobacter vinelandii, an obligate aerobe specialized to support diverse anaerobic metabolic processes

Setubal, J. C., Dos Santos, P., Goldman, B. S., Ertesvåg, H., Espin, G., Rubio, L. M., Valla, S., Almeida, N. F., Balasubramanian, D., Cromes, L., Curatti, L., Du, Z., Godsy, E., Goodner, B., Hellner-Burris, K., Hernandez, J. A., Houmiel, K., Imperial, J., Kennedy, C., Larson, T. J. & 24 others, Latreille, P., Ligon, L. S., Lu, J., Mærk, M., Miller, N. M., Norton, S., O'Carroll, I. P., Paulsen, I., Raulfs, E. C., Roemer, R., Rosser, J., Segura, D., Slater, S., Stricklin, S. L., Studholme, D. J., Sun, J., Viana, C. J., Wallin, E., Wang, B., Wheeler, C., Zhu, H., Dean, D. R., Dixon, R. & Wood, D., Jul 2009, In : Journal of Bacteriology. 191, 14, p. 4534-4545 12 p.

Research output: Contribution to journalArticle

152 Citations (Scopus)

Genome sequences of three agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteria

Slater, S. C., Goldman, B. S., Goodner, B., Setubal, J. C., Farrand, S. K., Nester, E. W., Burr, T. J., Banta, L., Dickerman, A. W., Paulsen, I., Otten, L., Suen, G., Welch, R., Almeida, N. F., Arnold, F., Burton, O. T., Du, Z., Ewing, A., Godsy, E., Heisel, S. & 16 others, Houmiel, K. L., Jhaveri, J., Lu, J., Miller, N. M., Norton, S., Chen, Q., Phoolcharoen, W., Ohlin, V., Ondrusek, D., Pride, N., Stricklin, S. L., Sun, J., Wheeler, C., Wilson, L., Zhu, H. & Wood, D. W., Apr 2009, In : Journal of Bacteriology. 191, 8, p. 2501-2511 11 p.

Research output: Contribution to journalArticle

154 Citations (Scopus)

Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes micromonas

Worden, A. Z., Lee, J. H., Mock, T., Rouzé, P., Simmons, M. P., Aerts, A. L., Allen, A. E., Cuvelier, M. L., Derelle, E., Everett, M. V., Foulon, E., Grimwood, J., Gundlach, H., Henrissat, B., Napoli, C., McDonald, S. M., Parker, M. S., Rombauts, S., Salamov, A., Von Dassow, P. & 31 others, Badger, J. H., Coutinho, P. M., Demir, E., Dubchak, I., Gentemann, C., Eikrem, W., Gready, J. E., John, U., Lanier, W., Lindquist, E. A., Lucas, S., Mayer, K. F. X., Moreau, H., Not, F., Otillar, R., Panaud, O., Pangilinan, J., Paulsen, I., Piegu, B., Poliakov, A., Robbens, S., Schmutz, J., Toulza, E., Wyss, T., Zelensky, A., Zhou, K., Armbrust, E. V., Bhattacharya, D., Goodenough, U. W., Van De Peer, Y. & Grigoriev, I. V., 10 Apr 2009, In : Science. 324, 5924, p. 268-272 5 p.

Research output: Contribution to journalArticle

410 Citations (Scopus)

Microarray analysis of phosphate regulation in the marine cyanobacterium synechococcus sp. WH8102

Tetu, S. G., Brahamsha, B., Johnson, D. A., Tai, V., Phillippy, K., Palenik, B. & Paulsen, I. T., Jul 2009, In : ISME Journal. 3, 7, p. 835-849 15 p.

Research output: Contribution to journalArticle

70 Citations (Scopus)

Mobile genetic elements in the genome of the beneficial rhizobacterium Pseudomonas fluorescens Pf-5

Mavrodi, D. V., Loper, J. E., Paulsen, I. T. & Thomashow, L. S., 2009, In : BMC Microbiology. 9, p. 1-18 18 p., 8.

Research output: Contribution to journalArticle

Open Access
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61 Citations (Scopus)
102 Downloads (Pure)

Pathway Tools version 13.0: Integrated software for pathway/genome informatics and systems biology

Karp, P. D., Paley, S. M., Krummenacker, M., Latendresse, M., Dale, J. M., Lee, T. J., Kaipa, P., Gilham, F., Spaulding, A., Popescu, L., Altman, T., Paulsen, I., Keseler, I. M. & Caspi, R., 2 Dec 2009, In : Briefings in Bioinformatics. 11, 1, p. 40-79 40 p., bbp043.

Research output: Contribution to journalArticle

319 Citations (Scopus)

Statistical analysis of microarray data with replicated spots: A case study with Synechococcus WH8102

Thomas, E. V., Phillippy, K. H., Brahamsha, B., Haaland, D. M., Timlin, J. A., Elbourne, L. D. H., Palenik, B. & Paulsen, I. T., 2009, In : Comparative and Functional Genomics. 2009, p. 1-11 11 p., 950171.

Research output: Contribution to journalArticle

5 Citations (Scopus)

The 2008 update of the Aspergillus nidulans genome annotation: a community effort.

Wortman, J. R., Gilsenan, J. M., Joardar, V., Deegan, J., Clutterbuck, J., Andersen, M. R., Archer, D., Bencina, M., Braus, G., Coutinho, P., von Döhren, H., Doonan, J., Driessen, A. J. M., Durek, P., Espeso, E., Fekete, E., Flipphi, M., Estrada, C. G., Geysens, S., Goldman, G. & 66 others, de Groot, P. W. J., Hansen, K., Harris, S. D., Heinekamp, T., Helmstaedt, K., Henrissat, B., Hofmann, G., Homan, T., Horio, T., Horiuchi, H., James, S., Jones, M., Karaffa, L., Karányi, Z., Kato, M., Keller, N., Kelly, D. E., Kiel, J. A. K. W., Kim, J. M., van der Klei, I. J., Klis, F. M., Kovalchuk, A., Krasevec, N., Kubicek, C. P., Liu, B., Maccabe, A., Meyer, V., Mirabito, P., Miskei, M., Mos, M., Mullins, J., Nelson, D. R., Nielsen, J., Oakley, B. R., Osmani, S. A., Pakula, T., Paszewski, A., Paulsen, I., Pilsyk, S., Pócsi, I., Punt, P. J., Ram, A. F. J., Ren, Q., Robellet, X., Robson, G., Seiboth, B., van Solingen, P., Specht, T., Sun, J., Taheri-Talesh, N., Takeshita, N., Ussery, D., vanKuyk, P. A., Visser, H., van de Vondervoort, P. J. I., de Vries, R. P., Walton, J., Xiang, X., Xiong, Y., Zeng, A. P., Brandt, B. W., Cornell, M. J., van den Hondel, C. A. M. J. J., Visser, J., Oliver, S. G. & Turner, G., Mar 2009, In : Fungal genetics and biology : FG & B. 46 Suppl 1, p. S2-S13 12 p.

Research output: Contribution to journalArticle

68 Citations (Scopus)

Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils

Ward, N. L., Challacombe, J. F., Janssen, P. H., Henrissat, B., Coutinho, P. M., Wu, M., Xie, G., Haft, D. H., Sait, M., Badger, J., Barabote, R. D., Bradley, B., Brettin, T. S., Brinkac, L. M., Bruce, D., Creasy, T., Daugherty, S. C., Davidsen, T. M., DeBoy, R. T., Detter, J. C. & 26 others, Dodson, R. J., Durkin, A. S., Ganapathy, A., Gwinn-Giglio, M., Han, C. S., Khouri, H., Kiss, H., Kothari, S. P., Madupu, R., Nelson, K. E., Nelson, W. C., Paulsen, I., Penn, K., Ren, Q., Rosovitz, M. J., Selengut, J. D., Shrivastava, S., Sullivan, S. A., Tapia, R., Thompson, S., Watkins, K. L., Yang, Q., Yu, C., Zafar, N., Zhou, L. & Kuske, C. R., Apr 2009, In : Applied and Environmental Microbiology. 75, 7, p. 2046-2056 11 p.

Research output: Contribution to journalArticle

439 Citations (Scopus)

Whole-genome microarray analyses of Synechococcus-Vibrio interactions

Tai, V., Paulsen, I. T., Phillippy, K., Johnson, D. A. & Palenik, B., Oct 2009, In : Environmental microbiology. 11, 10, p. 2698-2709 12 p.

Research output: Contribution to journalArticle

27 Citations (Scopus)
2008

Annotation-based inference of transporter function

Lee, T. J., Paulsen, I. & Karp, P., Jul 2008, In : Bioinformatics. 24, 13, p. i259-i267 9 p.

Research output: Contribution to journalArticle

25 Citations (Scopus)

Comparative genomics of the neglected human malaria parasite Plasmodium vivax

Carlton, J. M., Adams, J. H., Silva, J. C., Bidwell, S. L., Lorenzi, H., Caler, E., Crabtree, J., Angiuoli, S. V., Merino, E. F., Amedeo, P., Cheng, Q., Coulson, R. M. R., Crabb, B. S., Del Portillo, H. A., Essien, K., Feldblyum, T. V., Fernandez-Becerra, C., Gilson, P. R., Gueye, A. H., Guo, X. & 20 others, Kang'A, S., Kooij, T. W. A., Korsinczky, M., Meyer, E. V. S., Nene, V., Paulsen, I., White, O., Ralph, S. A., Ren, Q., Sargeant, T. J., Salzberg, S. L., Stoeckert, C. J., Sullivan, S. A., Yamamoto, M. M., Hoffman, S. L., Wortman, J. R., Gardner, M. J., Galinski, M. R., Barnwell, J. W. & Fraser-Liggett, C. M., 9 Oct 2008, In : Nature. 455, 7214, p. 757-763 7 p.

Research output: Contribution to journalArticle

566 Citations (Scopus)

Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria)

González, J. M., Fernández-Gómez, B., Fernàndez-Guerra, A., Gómez-Consarnau, L., Sánchez, O., Coll-Lladó, M., Del Campo, J., Escudero, L., Rodríguez-Martínez, R., Alonso-Sáez, L., Latasa, M., Paulsen, I., Nedashkovskaya, O., Lekunberri, I., Pinhassi, J. & Pedrós-Alió, C., 24 Jun 2008, In : Proceedings of the National Academy of Sciences of the United States of America. 105, 25, p. 8724-8729 6 p.

Research output: Contribution to journalArticle

166 Citations (Scopus)

Genome of the epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans

Sievert, S. M., Scott, K. M., Klotz, M. G., Chain, P. S. G., Hauser, L. J., Hemp, J., Hügler, M., Land, M., Lapidus, A., Larimer, F. W., Lucas, S., Malfatti, S. A., Meyer, F., Paulsen, I. T., Ren, Q., Simon, J., Bailey, K., Diaz, E., Fitzpatrick, K. A., Glover, B. & 14 others, Gwatney, N., Korajkic, A., Long, A., Mobberley, J. M., Pantry, S. N., Pazder, G., Peterson, S., Quintanilla, J. D., Sprinkle, R., Stephens, J., Thomas, P., Vaughn, R., Weber, M. J. & Wooten, L. L., Feb 2008, In : Applied and Environmental Microbiology. 74, 4, p. 1145-1156 12 p.

Research output: Contribution to journalArticle

154 Citations (Scopus)

High-throughput phenotypic characterization of Pseudomonas aeruginosa membrane transport genes

Johnson, D. A., Tetu, S. G., Phillippy, K., Chen, J., Ren, Q. & Paulsen, I. T., Oct 2008, In : PLoS Genetics. 4, 10, p. 1-11 11 p., e1000211.

Research output: Contribution to journalArticle

34 Citations (Scopus)

RamA confers multidrug resistance in Salmonella enterica via increased expression of acrB, which is inhibited by chlorpromazine

Bailey, A. M., Paulsen, I. T. & Piddock, L. J. V., Oct 2008, In : Antimicrobial Agents and Chemotherapy. 52, 10, p. 3604-3611 8 p.

Research output: Contribution to journalArticle

90 Citations (Scopus)

Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria

Dufresne, A., Ostrowski, M., Scanlan, D. J., Garczarek, L., Mazard, S., Palenik, B. P., Paulsen, I. T., de Marsac, N. T., Wincker, P., Dossat, C., Ferriera, S., Johnson, J., Post, A. F., Hess, W. R. & Partensky, F., 28 May 2008, In : Genome Biology. 9, 5, p. 1-16 16 p., R90.

Research output: Contribution to journalArticle

Open Access
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209 Citations (Scopus)
2007

Contribution of target gene mutations and efflux to decreased susceptibility of Salmonella enterica serovar typhimurium to fluoroquinolones and other antimicrobials

Chen, S., Cui, S., McDermott, P. F., Zhao, S., White, D. G., Paulsen, I. & Meng, J., Feb 2007, In : Antimicrobial Agents and Chemotherapy. 51, 2, p. 535-542 8 p.

Research output: Contribution to journalArticle

98 Citations (Scopus)

Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis

Carlton, J. M., Hirt, R. P., Silva, J. C., Delcher, A. L., Schatz, M., Zhao, Q., Wortman, J. R., Bidwell, S. L., Alsmark, U. C. M., Besteiro, S., Sicheritz-Ponten, T., Noel, C. J., Dacks, J. B., Foster, P. G., Simillion, C., Van De Peer, Y., Miranda-Saavedra, D., Barton, G. J., Westrop, G. D., Müller, S. & 45 others, Dessi, D., Fiori, P. L., Ren, Q., Paulsen, I., Zhang, H., Bastida-Corcuera, F. D., Simoes-Barbosa, A., Brown, M. T., Hayes, R. D., Mukherjee, M., Okumura, C. Y., Schneider, R., Smith, A. J., Vanacova, S., Villalvazo, M., Haas, B. J., Pertea, M., Feldblyum, T. V., Utterback, T. R., Shu, C. L., Osoegawa, K., De Jong, P. J., Hrdy, I., Horvathova, L., Zubacova, Z., Dolezal, P., Malik, S. B., Logsdon, J. M., Henze, K., Gupta, A., Wang, C. C., Dunne, R. L., Upcroft, J. A., Upcroft, P., White, O., Salzberg, S. L., Tang, P., Chiu, C. H., Lee, Y. S., Embley, T. M., Coombs, G. H., Mottram, J. C., Tachezy, J., Fraser-Liggett, C. M. & Johnson, P. J., 12 Jan 2007, In : Science. 315, 5809, p. 207-212 6 p.

Research output: Contribution to journalArticle

539 Citations (Scopus)

Ecological genomics of marine roseobacters

Moran, M. A., Belas, R., Schell, M. A., González, J. M., Sun, F., Sun, S., Binder, B. J., Edmonds, J., Ye, W., Orcutt, B., Howard, E. C., Meile, C., Palefsky, W., Goesmann, A., Ren, Q., Paulsen, I., Ulrich, L. E., Thompson, L. S., Saunders, E. & Buchan, A., Jul 2007, In : Applied and Environmental Microbiology. 73, 14, p. 4559-4569 11 p.

Research output: Contribution to journalArticle

228 Citations (Scopus)

Genome sequence and identification of candidate vaccine antigens from the animal pathogen Dichelobacter nodosus

Myers, G. S. A., Parker, D., Al-Hasani, K., Kennan, R. M., Seemann, T., Ren, Q., Badger, J. H., Selengut, J. D., DeBoy, R. T., Tettelin, H., Boyce, J. D., McCarl, V. P., Han, X., Nelson, W. C., Madupu, R., Mohamoud, Y., Holley, T., Fedorova, N., Khouri, H., Bottomley, S. P. & 5 others, Whittington, R. J., Adler, B., Songer, J. G., Rood, J. I. & Paulsen, I. T., May 2007, In : Nature Biotechnology. 25, 5, p. 569-575 7 p.

Research output: Contribution to journalArticle

51 Citations (Scopus)

Genome sequence of Aedes aegypti, a major arbovirus vector

Nene, V., Wortman, J. R., Lawson, D., Haas, B., Kodira, C., Tu, Z., Loftus, B., Xi, Z., Megy, K., Grabherr, M., Ren, Q., Zdobnov, E. M., Lobo, N. F., Campbell, K. S., Brown, S. E., Bonaldo, M. F., Zhu, J., Sinkins, S. P., Hogenkamp, D. G., Amedeo, P. & 75 others, Arensburger, P., Atkinson, P. W., Bidwell, S., Biedler, J., Birney, E., Bruggner, R. V., Costas, J., Coy, M. R., Crabtree, J., Crawford, M., DeBruyn, B., DeCaprio, D., Eiglmeier, K., Eisenstadt, E., El-Dorry, H., Gelbart, W. M., Gomes, S. L., Hammond, M., Hannick, L. I., Hogan, J. R., Holmes, M. H., Jaffe, D., Johnston, J. S., Kennedy, R. C., Koo, H., Kravitz, S., Kriventseva, E. V., Kulp, D., LaButti, K., Lee, E., Li, S., Lovin, D. D., Mao, C., Mauceli, E., Menck, C. F. M., Miller, J. R., Montgomery, P., Mori, A., Nascimento, A. L., Naveira, H. F., Nusbaum, C., O'Leary, S., Orvis, J., Pertea, M., Quesneville, H., Reidenbach, K. R., Rogers, Y. H., Roth, C. W., Schneider, J. R., Schatz, M., Shumway, M., Stanke, M., Stinson, E. O., Tubio, J. M. C., VanZee, J. P., Verjovski-Almeida, S., Werner, D., White, O., Wyder, S., Zeng, Q., Zhao, Q., Zhao, Y., Hill, C. A., Raikhel, A. S., Soares, M. B., Knudson, D. L., Lee, N. H., Galagan, J., Salzberg, S. L., Paulsen, I. T., Dimopoulos, G., Collins, F. H., Birren, B., Fraser-Liggett, C. M. & Severson, D. W., 22 Jun 2007, In : Science. 316, 5832, p. 1718-1723 6 p.

Research output: Contribution to journalArticle

735 Citations (Scopus)

Genome sequence of Babesia bovis and comparative analysis of apicomplexan hemoprotozoa

Brayton, K. A., Lau, A. O. T., Herndon, D. R., Hannick, L., Kappmeyer, L. S., Berens, S. J., Bidwell, S. L., Brown, W. C., Crabtree, J., Fadrosh, D., Feldblum, T., Forberger, H. A., Haas, B. J., Howell, J. M., Khouri, H., Koo, H., Mann, D. J., Norimine, J., Paulsen, I. T., Radune, D. & 8 others, Ren, Q., Smith, R. K., Suarez, C. E., White, O., Wortman, J. R., Knowles, D. P., McElwain, T. F. & Nene, V. M., Oct 2007, In : PLoS Pathogens. 3, 10, p. 1401-1413 13 p.

Research output: Contribution to journalArticle

251 Citations (Scopus)
47 Citations (Scopus)