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Research Outputs 1999 2019

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Article
2019

Sediment bacterial communities associated with environmental factors in Intermittently Closed and Open Lakes and Lagoons (ICOLLs)

Filippini, G., Bugnot, A. B., Johnston, E. L., Ruszczyk, J., Potts, J., Scanes, P., Ferguson, A., Ostrowski, M., Varkey, D. & Dafforn, K. A., 25 Nov 2019, In : Science of the Total Environment. 693, p. 1-12 12 p., 133462.

Research output: Contribution to journalArticleResearchpeer-review

Lakes
lagoon
Sediments
environmental factor
Silt

Unicellular cyanobacteria are important components of phytoplankton communities in Australia's Northern oceanic ecoregions

Moore, L. R., Huang, T., Ostrowski, M., Mazard, S., Kumar, S. S., Gamage, H. K. A. H., Brown, M. V., Messer, L. F., Seymour, J. R. & Paulsen, I., 23 Jan 2019, In : Frontiers in Microbiology. 9, 16 p., 3356.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Phytoplankton
Cyanobacteria
Oceans and Seas
Anthozoa
Haptophyta
2018

Oceanographic boundaries constrain microbial diversity gradients in the South Pacific Ocean

Raes, E. J., Bodrossy, L., van de Kamp, J., Bissett, A., Ostrowski, M., Brown, M. V., Sow, S. L. S., Sloyan, B. & Waite, A. M., 28 Aug 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 35, p. E8266-E8275 10 p.

Research output: Contribution to journalArticleResearchpeer-review

Pacific Ocean
Eukaryota
Archaea
Ice
Oceans and Seas

Stormwater influences phytoplankton assemblages within the diverse, but impacted Sydney Harbour estuary

Varkey, D., Mazard, S., Jeffries, T. C., Hughes, D. J., Seymour, J., Paulsen, I. T. & Ostrowski, M., 26 Dec 2018, In : PLoS ONE. 13, 12, 16 p., e0209857.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Phytoplankton
Estuaries
stormwater
harbors (waterways)
Ports and harbors

Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative

Brown, M. V., van de Kamp, J., Ostrowski, M., Seymour, J. R., Ingleton, T., Messer, L. F., Jeffries, T., Siboni, N., Laverock, B., Bibiloni-Isaksson, J., Nelson, T. M., Coman, F., Davies, C. H., Frampton, D., Rayner, M., Goossen, K., Robert, S., Holmes, B., Abell, G. C. J., Craw, P. & 17 othersKahlke, T., Sow, S. L. S., McAllister, K., Windsor, J., Skuza, M., Crossing, R., Patten, N., Malthouse, P., van Ruth, P. D., Paulsen, I., Fuhrman, J. A., Richardson, A., Koval, J., Bissett, A., Fitzgerald, A., Moltmann, T. & Bodrossy, L., 17 Jul 2018, In : Scientific Data. 5, p. 1-10 10 p., 180130.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Biodiversity
biodiversity
Bacteria
Genes
Monitoring

Virological sampling of inaccessible wildlife with drones

Geoghegan, J. L., Pirotta, V., Harvey, E., Smith, A., Buchmann, J., Ostrowski, M., Eden, J-S., Harcourt, R. & Holmes, E. C., 2 Jun 2018, In : Viruses. 10, 6, p. 1-7 7 p., 300.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Humpback Whale
Whales
Viruses
Virus Diseases
Meta-Analysis
2017

A mobility shift assay for DNA detection using nanochannel gradient electrophoresis

Startsev, M. A., Ostrowski, M., Goldys, E. M. & Inglis, D. W., Jan 2017, In : Electrophoresis. 38, 2, p. 335–341 7 p.

Research output: Contribution to journalArticleResearchpeer-review

Electrophoretic Mobility Shift Assay
Electrophoresis
Nanofluidics
Assays
DNA

An economical custom-built drone for assessing whale health

Pirotta, V., Smith, A., Ostrowski, M., Russell, D., Jonsen, I. D., Grech, A. & Harcourt, R., 21 Dec 2017, In : Frontiers in Marine Science. 4, DEC, p. 1-12 12 p., 425.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Unmanned aerial vehicles (UAV)
whales
whale
Health
Mammals
Open Access
File
Biosensing Techniques
Green Fluorescent Proteins
Yeasts
Synthetic Biology
Transcription Factors
2016

A sample-to-sequence protocol for genus targeted transcriptomic profiling: application to marine Synechococcus

Pitt, F. D., Millard, A., Ostrowski, M., Dervish, S., Mazard, S., Paulsen, I. T., Zubkov, M. V. & Scanlan, D. J., 14 Oct 2016, In : Frontiers in Microbiology. 7, p. 1-15 15 p., 1592.

Research output: Contribution to journalArticleResearchpeer-review

Synechococcus
Metagenomics
DNA Fingerprinting
Budgets
Oceans and Seas

Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria

Farrant, G. K., Doré, H., Cornejo-Castillo, F. M., Partensky, F., Ratin, M., Ostrowski, M., Pitt, F. D., Wincker, P., Scanlan, D. J., Iudicone, D., Acinas, S. G. & Garczarek, L., 14 Jun 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 24, p. E3365-E3374 10 p.

Research output: Contribution to journalArticleResearchpeer-review

Prochlorococcus
Synechococcus
Oceans and Seas
Cytochromes b6
Metagenome

Effects of low temperature on tropical and temperate isolates of marine Synechococcus

Varkey, D., Mazard, S., Ostrowski, M., Tetu, S. G., Haynes, P. & Paulsen, I. T., 1 May 2016, In : ISME Journal. 10, 5, p. 1252-1263 12 p.

Research output: Contribution to journalArticleResearchpeer-review

Synechococcus
Temperature
protein
Photosynthesis
photosynthesis

Fluorescence-based flow sorting in parallel with transposon insertion site sequencing identifies multidrug efflux systems in Acinetobacter baumannii

Hassan, K. A., Cain, A. K., Huang, T., Liu, Q., Elbourne, L. D. H., Boinett, C. J., Brzoska, A. J., Li, L., Ostrowski, M., Nhu, N. T. K., Nhu, T. D. H., Baker, S., Parkhill, J. & Paulsen, I. T., Sep 2016, In : mBio. 7, 5, p. 1-6 6 p., e01200-16.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Acinetobacter baumannii
Ethidium
Fluorescence
Flow Cytometry
High-Throughput Screening Assays

High levels of heterogeneity in diazotroph diversity and activity within a putative hotspot for marine nitrogen fixation

Messer, L. F., Mahaffey, C., Robinson, C. M., Jeffries, T. C., Baker, K. G., Isaksson, J. B., Ostrowski, M., Doblin, M. A., Brown, M. V. & Seymour, J. R., 1 Jun 2016, In : ISME Journal. 10, 6, p. 1499-1513 15 p.

Research output: Contribution to journalArticleResearchpeer-review

Anthozoa
Nitrogen Fixation
nitrogen fixation
Oceans and Seas
fixation

In situ associations between marine photosynthetic picoeukaryotes and potential parasites – a role for fungi?

Lepère, C., Ostrowski, M., Hartmann, M., Zubkov, M. V. & Scanlan, D. J., Aug 2016, In : Environmental Microbiology Reports. 8, 4, p. 445-451 7 p.

Research output: Contribution to journalArticleResearchpeer-review

parasite
Parasites
Fungi
fungus
fluorescence in situ hybridization
2015

Cell-specific CO2 fixation rates of two distinct groups of plastidic protists in the Atlantic Ocean remain unchanged after nutrient addition

Grob, C., Jardillier, L., Hartmann, M., Ostrowski, M., Zubkov, M. V. & Scanlan, D. J., 1 Apr 2015, In : Environmental Microbiology Reports. 7, 2, p. 211-218 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Atlantic Ocean
protist
fixation
Food
nutrient

Spatially extensive microbial biogeography of the Indian Ocean provides insights into the unique community structure of a pristine coral atoll

Jeffries, T. C., Ostrowski, M., Williams, R. B., Xie, C., Jensen, R. M., Grzymski, J. J., Senstius, S. J., Givskov, M., Hoeke, R., Philip, G. K., Neches, R. Y., Drautz-Moses, D. I., Chenard, C., Paulsen, I. T. & Lauro, F. M., 20 Oct 2015, In : Scientific Reports. 5, p. 1-13 13 p., 15383.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Synechococcus
Indian Ocean
Anthozoa
Islands
Oceanography
2014

A microarray for assessing transcription from pelagic marine microbial taxa

Shilova, I. N., Robidart, J. C., James Tripp, H., Turk-Kubo, K., Wawrik, B., Post, A. F., Thompson, A. W., Ward, B., Hollibaugh, J. T., Millard, A., Ostrowski, M., J Scanlan, D., Paerl, R. W., Stuart, R. & Zehr, J. P., 2014, In : ISME Journal. 8, 7, p. 1476-1491 16 p.

Research output: Contribution to journalArticleResearchpeer-review

Oceans and Seas
transcription (genetics)
oceans
ocean
microbial community

Efficient CO2 fixation by surface Prochlorococcus in the Atlantic Ocean

Hartmann, M., Gomez-Pereira, P., Grob, C., Ostrowski, M., Scanlan, D. J. & Zubkov, M. V., 25 Nov 2014, In : ISME Journal. 8, 11, p. 2280-2289 10 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Prochlorococcus
Atlantic Ocean
Phytoplankton
fixation
phytoplankton

The Common Oceanographer: Crowdsourcing the Collection of Oceanographic Data

Lauro, F. M., Senstius, S. J., Cullen, J., Neches, R., Jensen, R. M., Brown, M. V., Darling, A. E., Givskov, M., McDougald, D., Hoeke, R., Ostrowski, M., Philip, G. K., Paulsen, I. T. & Grzymski, J. J., 2014, In : PLoS Biology. 12, 9, p. 1-5 5 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
2013

Elemental composition of natural populations of key microbial groups in Atlantic waters

Grob, C., Ostrowski, M., Holland, R. J., Heldal, M., Norland, S., Erichsen, E. S., Blindauer, C., Martin, A. P., Zubkov, M. V. & Scanlan, D. J., Nov 2013, In : Environmental microbiology. 15, 11, p. 3054-3064 11 p.

Research output: Contribution to journalArticleResearchpeer-review

Redfield ratio
bacterioplankton
Phosphorus
Prochlorococcus
environmental conditions
2012

Multi-locus sequence analysis, taxonomic resolution and biogeography of marine Synechococcus

Mazard, S., Ostrowski, M., Partensky, F. & Scanlan, D. J., Feb 2012, In : Environmental microbiology. 14, 2, p. 372-386 15 p.

Research output: Contribution to journalArticleResearchpeer-review

Synechococcus
biogeography
Sequence Analysis
Marine Biology
Cytochromes b

Resolving low-expression cell surface antigens by time-gated orthogonal scanning automated microscopy

Lu, J., Martin, J., Lu, Y., Zhao, J., Yuan, J., Ostrowski, M., Paulsen, I., Piper, J. A. & Jin, D., 20 Nov 2012, In : Analytical Chemistry. 84, 22, p. 9674-9678 5 p.

Research output: Contribution to journalArticleResearchpeer-review

Surface Antigens
Microscopic examination
Europium
Nanoparticles
Scanning
2011

From omics to systems biology: exploring the mystery box of microbial life

Ostrowski, M., Tetu, S., Hassan, K., Penesyan, A., Lim, K., Elbourne, L., Li, L., Varkey, D. & Paulsen, I., 2011, In : Microbiology Australia. 32, 4, p. 147-151 5 p.

Research output: Contribution to journalArticleResearchpeer-review

genomics
phenotype
Biological Sciences
transcriptomics
proteomics

Is the distribution of Prochlorococcus and Synechococcus ecotypes in the Mediterranean Sea affected by global warming?

Mella-Flores, D., Mazard, S., Humily, F., Partensky, F., Mahé, F., Bariat, L., Courties, C., Marie, D., Ras, J., Mauriac, R., Jeanthon, C., Mahdi Bendif, E., Ostrowski, M., Scanlan, D. J. & Garczarek, L., 2011, In : Biogeosciences. 8, 9, p. 2785-2804 20 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Prochlorococcus
Synechococcus
ecotype
ecotypes
Mediterranean Sea
2010

PtrA is required for coordinate regulation of gene expression during phosphate stress in a marine Synechococcus

Ostrowski, M., Mazard, S., Tetu, S. G., Phillippy, K., Johnson, A., Palenik, B., Paulsen, I. T. & Scanlan, D. J., Jul 2010, In : ISME Journal. 4, 7, p. 908-921 14 p.

Research output: Contribution to journalArticleResearchpeer-review

Synechococcus
gene expression regulation
Gene Expression Regulation
Phosphoric Monoester Hydrolases
phosphatase
2008

Global phylogeography of marine Synechococcus and Prochlorococcus reveals a distinct partitioning of lineages among oceanic biomes

Zwirglmaier, K., Jardillier, L., Ostrowski, M., Mazard, S., Garczarek, L., Vaulot, D., Not, F., Massana, R., Ulloa, O. & Scanlan, D. J., Jan 2008, In : Environmental microbiology. 10, 1, p. 147-161 15 p.

Research output: Contribution to journalArticleResearchpeer-review

Prochlorococcus
Phylogeography
Synechococcus
phylogeography
biome

Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria

Dufresne, A., Ostrowski, M., Scanlan, D. J., Garczarek, L., Mazard, S., Palenik, B. P., Paulsen, I. T., de Marsac, N. T., Wincker, P., Dossat, C., Ferriera, S., Johnson, J., Post, A. F., Hess, W. R. & Partensky, F., 28 May 2008, In : Genome Biology. 9, 5, p. 1-16 16 p., R90.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Synechococcus
Cyanobacteria
cyanobacterium
genomics
genome
2007

Diversity and evolution of phycobilisomes in marine Synechococcus spp. A comparative genomics study

Six, C., Thomas, J. C., Garczarek, L., Ostrowski, M., Dufresne, A., Blot, N., Scanlan, D. J. & Partensky, F., 5 Dec 2007, In : Genome Biology. 8, 12, p. 1-22 22 p., R259.

Research output: Contribution to journalArticleResearchpeer-review

Phycobilisomes
phycobilisome
Synechococcus
Phycobiliproteins
Phycoerythrin
2006

A suppression subtractive hybridization approach reveals niche-specific genes that may be involved in predator avoidance in marine Synechococcus isolates

Jones, H., Ostrowski, M. & Scanlan, D. J., Apr 2006, In : Applied and Environmental Microbiology. 72, 4, p. 2730-2737 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Synechococcus
suppression subtractive hybridization
niche
niches
predator
2005

Ecotypic variation in phosphorus-acquisition mechanisms within marine picocyanobacteria

Moore, L. R., Ostrowski, M., Scanlan, D. J., Feren, K. & Sweetsir, T., 20 Jun 2005, In : Aquatic Microbial Ecology. 39, 3, p. 257-269 13 p.

Research output: Contribution to journalArticleResearchpeer-review

Prochlorococcus
phosphatase
Synechococcus
phosphorus
genotype
2004

Cross-species identification of proteins from proteome profiles of the marine oligotrophic ultramicrobacterium, Sphingopyxis alaskensis

Ostrowski, M., Fegatella, F., Wasinger, V., Guilhaus, M., Corthals, G. L. & Cavicchioli, R., Jun 2004, In : Proteomics. 4, 6, p. 1779-1788 10 p.

Research output: Contribution to journalArticleResearchpeer-review

Proteome
Sphingomonas
Proteins
Bacteria
Silver
2003

Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome

Dufresne, A., Salanoubat, M., Partensky, F., Artiguenave, F., Axmann, I. M., Barbe, V., Duprat, S., Galperin, M. Y., Koonin, E. V., Le Gall, F., Makarova, K. S., Ostrowski, M., Oztas, S., Robert, C., Rogozin, I. B., Scanlan, D. J., De Marsac, N. T., Weissenbach, J., Wincker, P., Wolf, Y. I. & 1 othersHess, W. R., 19 Aug 2003, In : Proceedings of the National Academy of Sciences of the United States of America. 100, 17, p. 10020-10025 6 p.

Research output: Contribution to journalArticleResearchpeer-review

Prochlorococcus
Cyanobacteria
Genome
Light
rRNA Operon
2001

Specific Growth Rate Plays a Critical Role in Hydrogen Peroxide Resistance of the Marine Oligotrophic Ultramicrobacterium Sphingomonas alaskensis Strain RB2256

Ostrowski, M., Cavicchioli, R., Blaauw, M. & Gottschal, J. C., Mar 2001, In : Applied and Environmental Microbiology. 67, 3, p. 1292-1299 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Sphingomonas alaskensis
Sphingomonas
stress resistance
specific growth rate
stress tolerance

Sphingomonas alaskensis Strain AFO1, an Abundant Oligotrophic Ultramicrobacterium from the North Pacific

Eguchi, M., Ostrowski, M., Fegatella, F., Bowman, J., Nichols, D., Nishino, T. & Cavicchioli, R., 2001, In : Applied and Environmental Microbiology. 67, 3-12, p. 4945-4954 10 p.

Research output: Contribution to journalArticleResearchpeer-review

Sphingomonas alaskensis
Sphingomonas
Bacteria
bacterium
picoplankton
1999

An assessment of protein profiles from the marine oligotrophic ultramicrobacterium, Sphingomonas sp. strain RB2256

Fegatella, F., Ostrowski, M. & Cavicchioli, R., Jul 1999, In : Electrophoresis. 20, 10, p. 2094-2098 5 p.

Research output: Contribution to journalArticleResearchpeer-review

Sphingomonas
Silver Staining
Electrophoresis
Silver
Labeling

Sphingomonads from marine environments

Cavicchioli, R., Fegatella, F., Ostrowski, M., Eguchi, M. & Gottschal, J., 1999, In : Journal of Industrial Microbiology and Biotechnology. 23, 4-5, p. 268-272 5 p.

Research output: Contribution to journalArticleResearchpeer-review

Sphingomonas
Ecology
Water
Ocean habitats
Clone Cells