20092023

Research output per year

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Research Outputs

2020

Complement pathway in Alzheimer's pathology and retinal neurodegenerative disorders: the road ahead

Mirzaei, M., Deng, L., Gupta, V. B., Graham, S. & Gupta, V., 1 Feb 2020, In : Neural Regeneration Research. 15, 2, p. 257-258 2 p.

Research output: Contribution to journalReview article

Open Access
File
4 Downloads (Pure)

Probing the role of the chloroplasts in heavy metal tolerance and accumulation in Euglena gracilis

Khatiwada, B., Hasan, M. T., Sun, A., Kamath, K. S., Mirzaei, M., Sunna, A. & Nevalainen, H., Jan 2020, In : Microorganisms. 8, 1, 18 p., 115.

Research output: Contribution to journalArticle

Open Access
File
2 Downloads (Pure)

Proteomic and metabolomic analysis of desiccation tolerance in wheat young seedlings

Koobaz, P., Reza Ghaffari, M., Heidari, M., Mirzaei, M., Ghanati, F., Amirkhani, A., Mortazavi, S. E., Moradi, F., Hajirezaei, M. R. & Salekdeh, G. H., Jan 2020, In : Plant Physiology and Biochemistry. 146, p. 349-362 14 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)
Open Access
File
1 Downloads (Pure)
2019

Abiotic stress responsive microRNome and proteome: how correlated are they?

Gharechahi, J., Sharifi, G., Mirzaei, M., Zeinalabedini, M. & Hosseini Salekdeh, G., Sep 2019, In : Environmental and Experimental Botany. 165, p. 150-160 11 p.

Research output: Contribution to journalReview article

Open Access
File
1 Citation (Scopus)
8 Downloads (Pure)
Open Access
File
7 Citations (Scopus)
148 Downloads (Pure)
1 Citation (Scopus)
Open Access
File
36 Downloads (Pure)

Loss of Shp2 rescues BDNF/TrkB signaling and contributes to improved retinal ganglion cell neuroprotection

Chitranshi, N., Dheer, Y., Mirzaei, M., Wu, Y., Salekdeh, G. H., Abbasi, M., Gupta, V., Vander Wall, R., You, Y., Graham, S. L. & Gupta, V., 6 Feb 2019, In : Molecular Therapy. 27, 2, p. 424-441 18 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Plant–microbe symbiosis: what has proteomics taught us?

Khatabi, B., Gharechahi, J., Ghaffari, M. R., Liu, D., Haynes, P. A., McKay, M. J., Mirzaei, M. & Salekdeh, G. H., Aug 2019, In : Proteomics. 19, 16, 20 p., 1800105.

Research output: Contribution to journalReview article

1 Citation (Scopus)

Proteomes of leaf-growing zones in rice genotypes with contrasting drought tolerance

Wu, Y., Mirzaei, M., Pascovici, D., Haynes, P. A. & Atwell, B. J., May 2019, In : Proteomics. 19, 9, p. 1-11 11 p., 1800310.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Retinoid x receptor modulation protects against ER stress response and rescues glaucoma phenotypes in adult mice

Dheer, Y., Chitranshi, N., Gupta, V., Sharma, S., Pushpitha, K., Abbasi, M., Mirzaei, M., You, Y., Graham, S. L. & Gupta, V., 1 Apr 2019, In : Experimental Neurology. 314, p. 111-125 15 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Root endophytic fungus Piriformospora indica improves drought stress adaptation in barley by metabolic and proteomic reprogramming

Ghaffari, M. R., Mirzaei, M., Ghabooli, M., Khatabi, B., Wu, Y., Zabet-Moghaddam, M., Mohammadi-Nejad, G., Haynes, P. A., Hajirezaei, M. R., Sepehri, M. & Salekdeh, G. H., 1 Jan 2019, In : Environmental and Experimental Botany. 157, p. 197-210 14 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)

The quest for missing proteins in rice

Rahiminejad, M., Ledari, M. T., Mirzaei, M., Ghorbanzadeh, Z., Kavousi, K., Ghaffari, M. R., Haynes, P. A., Komatsu, S. & Salekdeh, G. H., 7 Jan 2019, In : Molecular Plant. 12, 1, p. 4-6 3 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)
2 Citations (Scopus)
2018

BDNF polymorphism: a review of its diagnostic and clinical relevance in neurodegenerative disorders

Shen, T., You, Y., Joseph, C., Mirzaei, M., Klistorner, A., Graham, S. L. & Gupta, V., 1 Jun 2018, In : Aging and Disease. 9, 3, p. 523-536 14 p.

Research output: Contribution to journalArticle

Open Access
File
21 Citations (Scopus)
38 Downloads (Pure)
7 Citations (Scopus)

Combining RNA-seq and proteomic profiling in cryopreserved human sperm exposed to sublethal stress: new biomarkers for stress-tolerance in sperm

Hezavehei, M., Shahverdi, A., Salekdeh, G. H., Mirzaei, M., Sharafi, M., Eftekhari-Yazdi, P., Nikmehr, B., Seifi, S. & Mirshahvaladi, S., Jul 2018, In : Human Reproduction. 33, Suppl. 1, p. 90-91 2 p., O-199.

Research output: Contribution to journalMeeting abstract

Differential protein expression and post-translational modifications in metronidazole-resistant Giardia duodenalis

Emery, S. J., Baker, L., Ansell, B. R. E., Mirzaei, M., Haynes, P. A., McConville, M. J., Svärd, S. G. & Jex, A. R., 1 Apr 2018, In : GigaScience. 7, 4, p. 1-22 22 p., giy024.

Research output: Contribution to journalArticle

Open Access
File
10 Citations (Scopus)
36 Downloads (Pure)

Discovery of novel cell surface markers for purification of embryonic dopamine progenitors for transplantation in Parkinson's disease animal models

Fathi, A., Mirzaei, M., Dolatyar, B., Sharifitabar, M., Bayat, M., Shahbazi, E., Lee, J., Javan, M., Zhang, S-C., Gupta, V., Lee, B., Haynes, P. A., Baharvand, H. & Salekdeh, G. H., 1 Sep 2018, In : Molecular and Cellular Proteomics. 17, 9, p. 1670-1684 15 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Distinct changes in the proteome profile of endometrial tissues in polycystic ovary syndrome compared with healthy fertile women

Amjadi, F., Mehdizadeh, M., Ashrafi, M., Nasrabadi, D., Taleahmad, S., Mirzaei, M., Gupta, V., Salekdeh, G. H. & Aflatoonian, R., Aug 2018, In : Reproductive BioMedicine Online. 37, 2, p. 184-200 17 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)

Distribution and development of molecularly distinct perineuronal nets in visual thalamus

Sabbagh, U., Monavarfeshani, A., Su, K., Zabet-Moghadam, M., Cole, J., Carnival, E., Su, J., Mirzaei, M., Gupta, V., Salekdeh, G. H. & Fox, M. A., Dec 2018, In : Journal of Neurochemistry. 147, 5, p. 626-646 21 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

FTY720 promotes cellular pathways involved in myelination and anti-oxidant system in the brain cortex

Mirzaei, M., Gupta, V., Klistorner, A. & Graham, SL., 10 Apr 2018, In : Neurology. 90, 15 Supplement, P1.411.

Research output: Contribution to journalMeeting abstract

Open Access

Linking transcriptomics and proteomics in cryopreserved human sperm

Hezavehei, M., Mirzaei, M., Salekdeh, G. H., Shahverdi, A., Eftekhari-Yazdi, P. & Sharafi, M., Feb 2018, In : Cryobiology. 80, p. 175 1 p., S75.

Research output: Contribution to journalMeeting abstract

Molecular similarities and differences between human and rat retinas in glaucoma

Mirzaei, M., Gupta, V., Chitranshi, N., Wu, Y. & Graham, S. L., 2018, In : IOVS. 59, 9, p. 3531 1 p.

Research output: Contribution to journalMeeting abstract

Prospective isolation of ISL1+ cardiac progenitors from human ESCs for myocardial infarction therapy

Ghazizadeh, Z., Fattahi, F., Mirzaei, M., Bayersaikhan, D., Lee, J., Chae, S., Hwang, D., Byun, K., Tabar, M. S., Taleahmad, S., Mirshahvaladi, S., Shabani, P., Fonoudi, H., Haynes, P. A., Baharvand, H., Aghdami, N., Evans, T., Lee, B. & Salekdeh, G. H., 13 Mar 2018, In : Stem Cell Reports. 10, 3, p. 848-859 12 p.

Research output: Contribution to journalArticle

Open Access
File
6 Citations (Scopus)
12 Downloads (Pure)
Open Access
File
5 Citations (Scopus)
10 Downloads (Pure)

Retinal changes in Alzheimer's disease: disease mechanisms to evaluation perspectives

Mirzaei, M., Gupta, V. B. & Gupta, V. K., 2018, In : Journal of Neurology & Neuromedicine. 3, 2, p. 11-13 3 p.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
9 Downloads (Pure)

Stress preconditioning of sperm for cryopreservation: new approach based on proteomics characteristics

Hezavehei, M., Kouchesfahani, H. M., Salekdeh, G. H., Mirzaei, M., Sharafi, M., Eftekhari-Yazdi, P., Tobraggaleh, T. R. & Shahverdi, A., Feb 2018, In : Cryobiology. 80, p. 190 1 p., P42.

Research output: Contribution to journalMeeting abstract

Surface markers of human embryonic stem cells: a meta analysis of membrane proteomics reports

Shekari, F., Han, C. L., Lee, J., Mirzaei, M., Gupta, V., Haynes, P. A., Lee, B., Baharvand, H., Chen, Y. J. & Hosseini Salekdeh, G., 2 Nov 2018, In : Expert Review of Proteomics. 15, 11, p. 911-922 12 p.

Research output: Contribution to journalReview article

2 Citations (Scopus)

The Art of validating quantitative proteomics data

Handler, D. C., Pascovici, D., Mirzaei, M., Gupta, V., Salekdeh, G. H. & Haynes, P. A., Dec 2018, In : Proteomics. 18, 23, p. 1-6 6 p., 1800222.

Research output: Contribution to journalArticle

1 Citation (Scopus)
2017

A comprehensive assessment of the biosynthetic pathways of ascorbate, alpha-tocopherol and free amino acids in Euglena gracilis var. saccharophila

Hasan, M. T., Sun, A., Mirzaei, M., Te'o, J., Hobba, G., Sunna, A. & Nevalainen, H., Nov 2017, In : Algal Research. 27, p. 140-151 12 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Age-related neurodegenerative disease associated pathways identified in retinal and vitreous proteome from human glaucoma eyes

Mirzaei, M., Gupta, V. B., Chick, J. M., Greco, T. M., Wu, Y., Chitranshi, N., Wall, R. V., Hone, E., Deng, L., Dheer, Y., Abbasi, M., Rezaeian, M., Braidy, N., You, Y., Salekdeh, G. H., Haynes, P. A., Molloy, M. P., Martins, R., Cristea, I. M., Gygi, S. P. & 2 others, Graham, S. L. & Gupta, V. K., 4 Oct 2017, In : Scientific Reports. 7, 1, p. 1-16 16 p., 12685.

Research output: Contribution to journalArticle

Open Access
File
23 Citations (Scopus)
25 Downloads (Pure)

A proteomics approach to discover drought tolerance proteins in wheat pollen grain at meiosis stage

Fotovat, R., Alikhani, M., Valizadeh, M., Mirzaei, M. & Salekdeh, G. H., 2017, In : Protein and peptide letters. 24, 1, p. 26-36 11 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Barley grain proteomics

Willows, R. D., Worden, P. & Mirzaei, M., 2017, Proteomics in food science: from farm to fork. Cosgrove, M. L. (ed.). London; San Diego; Cambridge; Oxford: Academic Press, p. 75-88 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)

Glaucoma is associated with plasmin proteolytic activation mediated through oxidative inactivation of neuroserpin

Gupta, V., Mirzaei, M., Gupta, V. B., Chitranshi, N., Dheer, Y., Vander Wall, R., Abbasi, M., You, Y., Chung, R. & Graham, S., 1 Dec 2017, In : Scientific Reports. 7, p. 1-18 18 p., 8412.

Research output: Contribution to journalArticle

Open Access
File
7 Citations (Scopus)
24 Downloads (Pure)

Low focal adhesion signaling promotes ground state pluripotency of mouse embryonic stem cells

Taleahmad, S., Mirzaei, M., Samadian, A., Hassani, S. N., Haynes, P. A., Salekdeh, G. H. & Baharvand, H., 2017, In : Journal of Proteome Research. 16, 10, p. 3585-3595 11 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)

Mapping proteomics changes induced by fingolimod in different regions of the brain and retina

Gupta, V., Mirzaei, M., Klistorner, A. & Graham, SL., Oct 2017, In : Multiple Sclerosis Journal. 23, 3 suppl, p. 882-883 2 p., EP1679.

Research output: Contribution to journalMeeting abstract

Proteomics of rice - our most valuable food crop

Wu, Y., Mirzaei, M. & Haynes, P. A., 5 Apr 2017, Proteomics in Food Science: from Farm to Fork. Colgrave, M. L. (ed.). London ; San Diego ; Cambridge ; Oxford: Elsevier, p. 17-33 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

PTPN11 induces endoplasmic stress and apoptosis in SH-SY5Y cells

Chitranshi, N., Dheer, Y., Gupta, V., Abbasi, M., Mirzaei, M., You, Y., Chung, R., Graham, S. L. & Gupta, V., 19 Nov 2017, In : Neuroscience. 364, p. 175-189 15 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)

Quantitative proteomic analysis of human testis reveals system-wide molecular and cellular pathways associated with non-obstructive azoospermia

Alikhani, M., Mirzaei, M., Sabbaghian, M., Parsamatin, P., Karamzadeh, R., Adib, S., Sodeifi, N., Gilani, M. A. S., Zabet-Moghaddam, M., Parker, L., Wu, Y., Gupta, V., Haynes, P. A., Gourabi, H., Baharvand, H. & Salekdeh, G. H., 6 Jun 2017, In : Journal of Proteomics. 162, p. 141-154 14 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)

TMT one-stop shop: from reliable sample preparation to computational analysis platform

Mirzaei, M., Pascovici, D., Wu, J. X., Chick, J., Wu, Y., Cooke, B., Haynes, P. & Molloy, M. P., 2017, Proteome Bioinformatics: Methods in Molecular Biology. Keerthikumar, S. & Mathivanan, S. (eds.). New York: Humana Press Inc., Vol. 1549. p. 45-66 22 p. (Methods in Molecular Biology; vol. 1549).

Research output: Chapter in Book/Report/Conference proceedingChapter

6 Citations (Scopus)
2016

Applications of quantitative proteomics in plant research

Mirzaei, M., Wu, Y., Handler, D., Maher, T., Pascovici, D., Ravishankar, P., Moghaddam, M. Z., Haynes, P. A., Salekdeh, G. H., Chick, J. M. & Willows, R. D., 1 Jan 2016, Agricultural proteomics volume 1: Crops, horticulture, farm animals, food, insect and microorganisms. Salekdeh, G. H. (ed.). Switzerland: Springer, Springer Nature, Vol. 1. p. 1-29 29 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Citations (Scopus)
1 Citation (Scopus)

How proteomics contributes to our understanding of drought tolerance

Mirzaei, M., Wu, Y., Worden, P., Jerkovic, A. & Atwell, B. J., 2016, Agricultural Proteomics Volume 2: Environmental Stresses. Salekdeh, G. H. (ed.). Cham: Springer, Springer Nature, p. 129-153 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Citations (Scopus)