20092020

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2020
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Caveolin-1 ablation imparts partial protection against inner retinal injury in experimental glaucoma and reduces apoptotic activation

Abbasi, M., Gupta, V. K., Chitranshi, N., Gupta, V. B., Mirzaei, M., Dheer, Y., Garthwaite, L., Zaw, T., Parton, R. G., You, Y. & Graham, S. L., 23 Jun 2020, In : Molecular Neurobiology. 26 p.

Research output: Contribution to journalArticle

Probing the role of the chloroplasts in heavy metal tolerance and accumulation in Euglena gracilis

Khatiwada, B., Hasan, M. T., Sun, A., Kamath, K. S., Mirzaei, M., Sunna, A. & Nevalainen, H., Jan 2020, In : Microorganisms. 8, 1, 18 p., 115.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
6 Downloads (Pure)

Proteomic and metabolomic analysis of desiccation tolerance in wheat young seedlings

Koobaz, P., Reza Ghaffari, M., Heidari, M., Mirzaei, M., Ghanati, F., Amirkhani, A., Mortazavi, S. E., Moradi, F., Hajirezaei, M. R. & Salekdeh, G. H., Jan 2020, In : Plant Physiology and Biochemistry. 146, p. 349-362 14 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Proteomic response of Euglena gracilis to heavy metal exposure: identification of key proteins involved in heavy metal tolerance and accumulation

Khatiwada, B., Hasan, M. T., Sun, A., Kamath, K. S., Mirzaei, M., Sunna, A. & Nevalainen, H., Jan 2020, In : Algal Research. 45, p. 1-11 11 p., 101764.

Research output: Contribution to journalArticle

2 Citations (Scopus)
Open Access
File
1 Citation (Scopus)
4 Downloads (Pure)
1 Citation (Scopus)
2019
Open Access
File
3 Citations (Scopus)
13 Downloads (Pure)

Comparative proteomics investigation of central carbon metabolism in Euglena gracilis grown under predominantly phototrophic, mixotrophic and heterotrophic cultivations

Hasan, M. T., Sun, A., Khatiwada, B., McQuade, L., Mirzaei, M., Te'o, J., Hobba, G., Sunna, A. & Nevalainen, H., Nov 2019, In : Algal Research. 43, p. 1-11 11 p., 101638.

Research output: Contribution to journalArticle

1 Citation (Scopus)
1 Citation (Scopus)
Open Access
File
42 Downloads (Pure)

Loss of Shp2 rescues BDNF/TrkB signaling and contributes to improved retinal ganglion cell neuroprotection

Chitranshi, N., Dheer, Y., Mirzaei, M., Wu, Y., Salekdeh, G. H., Abbasi, M., Gupta, V., Vander Wall, R., You, Y., Graham, S. L. & Gupta, V., 6 Feb 2019, In : Molecular Therapy. 27, 2, p. 424-441 18 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Proteomes of leaf-growing zones in rice genotypes with contrasting drought tolerance

Wu, Y., Mirzaei, M., Pascovici, D., Haynes, P. A. & Atwell, B. J., May 2019, In : Proteomics. 19, 9, p. 1-11 11 p., 1800310.

Research output: Contribution to journalArticle

4 Citations (Scopus)
6 Citations (Scopus)

Root endophytic fungus Piriformospora indica improves drought stress adaptation in barley by metabolic and proteomic reprogramming

Ghaffari, M. R., Mirzaei, M., Ghabooli, M., Khatabi, B., Wu, Y., Zabet-Moghaddam, M., Mohammadi-Nejad, G., Haynes, P. A., Hajirezaei, M. R., Sepehri, M. & Salekdeh, G. H., 1 Jan 2019, In : Environmental and Experimental Botany. 157, p. 197-210 14 p.

Research output: Contribution to journalArticle

13 Citations (Scopus)

The quest for missing proteins in rice

Rahiminejad, M., Ledari, M. T., Mirzaei, M., Ghorbanzadeh, Z., Kavousi, K., Ghaffari, M. R., Haynes, P. A., Komatsu, S. & Salekdeh, G. H., 7 Jan 2019, In : Molecular Plant. 12, 1, p. 4-6 3 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)
5 Citations (Scopus)
2018

BDNF polymorphism: a review of its diagnostic and clinical relevance in neurodegenerative disorders

Shen, T., You, Y., Joseph, C., Mirzaei, M., Klistorner, A., Graham, S. L. & Gupta, V., 1 Jun 2018, In : Aging and Disease. 9, 3, p. 523-536 14 p.

Research output: Contribution to journalArticle

Open Access
File
24 Citations (Scopus)
44 Downloads (Pure)
11 Citations (Scopus)

Differential protein expression and post-translational modifications in metronidazole-resistant Giardia duodenalis

Emery, S. J., Baker, L., Ansell, B. R. E., Mirzaei, M., Haynes, P. A., McConville, M. J., Svärd, S. G. & Jex, A. R., 1 Apr 2018, In : GigaScience. 7, 4, p. 1-22 22 p., giy024.

Research output: Contribution to journalArticle

Open Access
File
11 Citations (Scopus)
40 Downloads (Pure)

Discovery of novel cell surface markers for purification of embryonic dopamine progenitors for transplantation in Parkinson's disease animal models

Fathi, A., Mirzaei, M., Dolatyar, B., Sharifitabar, M., Bayat, M., Shahbazi, E., Lee, J., Javan, M., Zhang, S-C., Gupta, V., Lee, B., Haynes, P. A., Baharvand, H. & Salekdeh, G. H., 1 Sep 2018, In : Molecular and Cellular Proteomics. 17, 9, p. 1670-1684 15 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)

Distinct changes in the proteome profile of endometrial tissues in polycystic ovary syndrome compared with healthy fertile women

Amjadi, F., Mehdizadeh, M., Ashrafi, M., Nasrabadi, D., Taleahmad, S., Mirzaei, M., Gupta, V., Salekdeh, G. H. & Aflatoonian, R., Aug 2018, In : Reproductive BioMedicine Online. 37, 2, p. 184-200 17 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)

Distribution and development of molecularly distinct perineuronal nets in visual thalamus

Sabbagh, U., Monavarfeshani, A., Su, K., Zabet-Moghadam, M., Cole, J., Carnival, E., Su, J., Mirzaei, M., Gupta, V., Salekdeh, G. H. & Fox, M. A., Dec 2018, In : Journal of Neurochemistry. 147, 5, p. 626-646 21 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Prospective isolation of ISL1+ cardiac progenitors from human ESCs for myocardial infarction therapy

Ghazizadeh, Z., Fattahi, F., Mirzaei, M., Bayersaikhan, D., Lee, J., Chae, S., Hwang, D., Byun, K., Tabar, M. S., Taleahmad, S., Mirshahvaladi, S., Shabani, P., Fonoudi, H., Haynes, P. A., Baharvand, H., Aghdami, N., Evans, T., Lee, B. & Salekdeh, G. H., 13 Mar 2018, In : Stem Cell Reports. 10, 3, p. 848-859 12 p.

Research output: Contribution to journalArticle

Open Access
File
8 Citations (Scopus)
12 Downloads (Pure)

Retinal changes in Alzheimer's disease: disease mechanisms to evaluation perspectives

Mirzaei, M., Gupta, V. B. & Gupta, V. K., 2018, In : Journal of Neurology & Neuromedicine. 3, 2, p. 11-13 3 p.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
10 Downloads (Pure)

The Art of validating quantitative proteomics data

Handler, D. C., Pascovici, D., Mirzaei, M., Gupta, V., Salekdeh, G. H. & Haynes, P. A., Dec 2018, In : Proteomics. 18, 23, p. 1-6 6 p., 1800222.

Research output: Contribution to journalArticle

2 Citations (Scopus)
2017

A comprehensive assessment of the biosynthetic pathways of ascorbate, alpha-tocopherol and free amino acids in Euglena gracilis var. saccharophila

Hasan, M. T., Sun, A., Mirzaei, M., Te'o, J., Hobba, G., Sunna, A. & Nevalainen, H., Nov 2017, In : Algal Research. 27, p. 140-151 12 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Age-related neurodegenerative disease associated pathways identified in retinal and vitreous proteome from human glaucoma eyes

Mirzaei, M., Gupta, V. B., Chick, J. M., Greco, T. M., Wu, Y., Chitranshi, N., Wall, R. V., Hone, E., Deng, L., Dheer, Y., Abbasi, M., Rezaeian, M., Braidy, N., You, Y., Salekdeh, G. H., Haynes, P. A., Molloy, M. P., Martins, R., Cristea, I. M., Gygi, S. P. & 2 others, Graham, S. L. & Gupta, V. K., 4 Oct 2017, In : Scientific Reports. 7, 1, p. 1-16 16 p., 12685.

Research output: Contribution to journalArticle

Open Access
File
31 Citations (Scopus)
26 Downloads (Pure)

A proteomics approach to discover drought tolerance proteins in wheat pollen grain at meiosis stage

Fotovat, R., Alikhani, M., Valizadeh, M., Mirzaei, M. & Salekdeh, G. H., 2017, In : Protein and peptide letters. 24, 1, p. 26-36 11 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)

Glaucoma is associated with plasmin proteolytic activation mediated through oxidative inactivation of neuroserpin

Gupta, V., Mirzaei, M., Gupta, V. B., Chitranshi, N., Dheer, Y., Vander Wall, R., Abbasi, M., You, Y., Chung, R. & Graham, S., 1 Dec 2017, In : Scientific Reports. 7, p. 1-18 18 p., 8412.

Research output: Contribution to journalArticle

Open Access
File
10 Citations (Scopus)
24 Downloads (Pure)

Low focal adhesion signaling promotes ground state pluripotency of mouse embryonic stem cells

Taleahmad, S., Mirzaei, M., Samadian, A., Hassani, S. N., Haynes, P. A., Salekdeh, G. H. & Baharvand, H., 6 Oct 2017, In : Journal of Proteome Research. 16, 10, p. 3585-3595 11 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

PTPN11 induces endoplasmic stress and apoptosis in SH-SY5Y cells

Chitranshi, N., Dheer, Y., Gupta, V., Abbasi, M., Mirzaei, M., You, Y., Chung, R., Graham, S. L. & Gupta, V., 19 Nov 2017, In : Neuroscience. 364, p. 175-189 15 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Quantitative proteomic analysis of human testis reveals system-wide molecular and cellular pathways associated with non-obstructive azoospermia

Alikhani, M., Mirzaei, M., Sabbaghian, M., Parsamatin, P., Karamzadeh, R., Adib, S., Sodeifi, N., Gilani, M. A. S., Zabet-Moghaddam, M., Parker, L., Wu, Y., Gupta, V., Haynes, P. A., Gourabi, H., Baharvand, H. & Salekdeh, G. H., 6 Jun 2017, In : Journal of Proteomics. 162, p. 141-154 14 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)
2016
1 Citation (Scopus)
4 Citations (Scopus)

Induction of virulence factors in giardia duodenalis independent of host attachment

Emery, S. J., Mirzaei, M., Vuong, D., Pascovici, D., Chick, J. M., Lacey, E. & Haynes, P. A., 12 Feb 2016, In : Scientific Reports. 6, p. 1-16 16 p., 20765.

Research output: Contribution to journalArticle

Open Access
File
22 Citations (Scopus)
12 Downloads (Pure)

PlantPReS: a database for plant proteome response to stress

Mousavi, S. A., Pouya, F. M., Ghaffari, M. R., Mirzaei, M., Ghaffari, A., Alikhani, M., Ghareyazie, M., Komatsu, S., Haynes, P. A. & Salekdeh, G. H., 30 Jun 2016, In : Journal of Proteomics. 143, p. 69-72 4 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)
5 Citations (Scopus)
21 Citations (Scopus)
7 Citations (Scopus)
2015

Combining protein ratio p -values as a pragmatic approach to the analysis of multirun iTRAQ experiments

Pascovici, D., Song, X., Solomon, P. S., Winterberg, B., Mirzaei, M., Goodchild, A., Stanley, W. C., Liu, J. & Molloy, M. P., 6 Feb 2015, In : Journal of Proteome Research. 14, 2, p. 738-746 9 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Comparative physiology and proteomic analysis of two wheat genotypes contrasting in drought tolerance

Faghani, E., Gharechahi, J., Komatsu, S., Mirzaei, M., Khavarinejad, R. A., Najafi, F., Farsad, L. K. & Salekdeh, G. H., 30 Jan 2015, In : Journal of Proteomics. 114, p. 1-15 15 p.

Research output: Contribution to journalArticle

63 Citations (Scopus)

Comparative proteomic and physiological characterisation of two closely related rice genotypes with contrasting responses to salt stress

Abdollah Hosseini, S., Gharechahi, J., Heidari, M., Koobaz, P., Abdollahi, S., Mirzaei, M., Nakhoda, B. & Hosseini Salekdeh, G., Jun 2015, In : Functional Plant Biology. 42, 6, p. 527-542 16 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Data in support of comparative physiology and proteomic analysis of two wheat genotypes contrasting in drought tolerance

Faghani, E., Gharechahi, J., Komatsu, S., Mirzaei, M., Ali Khavarinejad, R., Najafi, F., Karimi Farsad, L. & Hosseini Salekdeh, G., 1 Mar 2015, In : Data in Brief. 2, p. 26-28 3 p.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
99 Downloads (Pure)

DDX3Y, a male-specific region of y chromosome gene, may modulate neuronal differentiation

Vakilian, H., Mirzaei, M., Sharifi Tabar, M., Pooyan, P., Habibi Rezaee, L., Parker, L., Haynes, P. A., Gourabi, H., Baharvand, H. & Salekdeh, G. H., 4 Sep 2015, In : Journal of Proteome Research. 14, 9, p. 3474-3483 10 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)

Inter-laboratory evaluation of instrument platforms and experimental workflows for quantitative accuracy and reproducibility assessment

Percy, A. J., Tamura-Wells, J., Albar, J. P., Aloria, K., Amirkhani, A., Araujo, G. D. T., Arizmendi, J. M., Blanco, F. J., Canals, F., Cho, J. Y., Colomé-Calls, N., Corrales, F. J., Domont, G., Espadas, G., Fernandez-Puente, P., Gil, C., Haynes, P. A., Hernáez, M. L., Kim, J. Y., Kopylov, A. & 16 others, Marcilla, M., McKay, M. J., Mirzaei, M., Molloy, M. P., Ohlund, L. B., Paik, Y. K., Paradela, A., Raftery, M., Sabidó, E., Sleno, L., Wilffert, D., Wolters, J. C., Yoo, J. S., Zgoda, V., Parker, C. E. & Borchers, C. H., 1 Sep 2015, In : EuPA Open Proteomics. 8, p. 6-15 10 p.

Research output: Contribution to journalArticle

Open Access
File
25 Citations (Scopus)
11 Downloads (Pure)
23 Citations (Scopus)

Proteome analysis of ground state pluripotency

Taleahmad, S., Mirzaei, M., Parker, L. M., Hassani, S. N., Mollamohammadi, S., Sharifi-Zarchi, A., Haynes, P. A., Baharvand, H. & Salekdeh, G. H., 16 Dec 2015, In : Scientific Reports. 5, p. 1-10 10 p., 17985.

Research output: Contribution to journalArticle

Open Access
File
19 Citations (Scopus)
14 Downloads (Pure)
21 Citations (Scopus)

The Hsp90 inhibitor SNX-7081 is synergistic with fludarabine nucleoside via DNA damage and repair mechanisms in human, p53-negative chronic lymphocytic leukemia

Kaufman, K. L., Jenkins, Y., Alomari, M., Mirzaei, M., Giles Best, O., Pascovici, D., Mactier, S., Mulligan, S. P., Haynes, P. A. & Christopherson, R. I., 2015, In : Oncotarget. 6, 38, p. 40981-40997 17 p.

Research output: Contribution to journalArticle

Open Access
File
7 Citations (Scopus)
12 Downloads (Pure)