If you made any changes in Pure these will be visible here soon.

Research Outputs 1991 2020

2020
Open Access
File
drought
Drought
Droughts
rice
Proteomics
2019
Open Access
File
Vertebrate Photoreceptor Cells
Oxidative Phosphorylation
Amyloid
Photoreceptor Cells
Alzheimer Disease

Evidence from the proteome for local adaptation to extreme heat in a widespread tree species

Maher, T., Mirzaei, M., Pascovici, D., Wright, I. J., Haynes, P. A. & Gallagher, R. V., Mar 2019, In : Functional Ecology. 33, 3, p. 436-446 11 p.

Research output: Contribution to journalArticleResearchpeer-review

local adaptation
proteome
heat
protein
Eucalyptus grandis
Open Access
File
proteomics
water stress
drought
rice
cultivars

Plant–microbe symbiosis: what has proteomics taught us?

Khatabi, B., Gharechahi, J., Ghaffari, M. R., Liu, D., Haynes, P. A., McKay, M. J., Mirzaei, M. & Salekdeh, G. H., Aug 2019, In : Proteomics. 19, 16, 20 p., 1800105.

Research output: Contribution to journalReview articleResearchpeer-review

Symbiosis
Proteomics
Functional analysis
Productivity
Food Supply

Proteomes of leaf-growing zones in rice genotypes with contrasting drought tolerance

Wu, Y., Mirzaei, M., Pascovici, D., Haynes, P. A. & Atwell, B. J., May 2019, In : Proteomics. 19, 9, p. 1-11 11 p., 1800310.

Research output: Contribution to journalArticleResearchpeer-review

Drought
Droughts
Proteome
Genotype
Drying

Root endophytic fungus Piriformospora indica improves drought stress adaptation in barley by metabolic and proteomic reprogramming

Ghaffari, M. R., Mirzaei, M., Ghabooli, M., Khatabi, B., Wu, Y., Zabet-Moghaddam, M., Mohammadi-Nejad, G., Haynes, P. A., Hajirezaei, M. R., Sepehri, M. & Salekdeh, G. H., 1 Jan 2019, In : Environmental and Experimental Botany. 157, p. 197-210 14 p.

Research output: Contribution to journalArticleResearchpeer-review

proteomics
drought stress
barley
water stress
fungus

The quest for missing proteins in rice

Rahiminejad, M., Ledari, M. T., Mirzaei, M., Ghorbanzadeh, Z., Kavousi, K., Ghaffari, M. R., Haynes, P. A., Komatsu, S. & Salekdeh, G. H., 7 Jan 2019, In : Molecular Plant. 12, 1, p. 4-6 3 p.

Research output: Contribution to journalArticleResearchpeer-review

Protein Biosynthesis
Amyloid beta-Protein Precursor
Retina
Alzheimer Disease
Up-Regulation
2018

Differential protein expression and post-translational modifications in metronidazole-resistant Giardia duodenalis

Emery, S. J., Baker, L., Ansell, B. R. E., Mirzaei, M., Haynes, P. A., McConville, M. J., Svärd, S. G. & Jex, A. R., 1 Apr 2018, In : GigaScience. 7, 4, p. 1-22 22 p., giy024.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

Discovery of novel cell surface markers for purification of embryonic dopamine progenitors for transplantation in Parkinson's disease animal models

Fathi, A., Mirzaei, M., Dolatyar, B., Sharifitabar, M., Bayat, M., Shahbazi, E., Lee, J., Javan, M., Zhang, S-C., Gupta, V., Lee, B., Haynes, P. A., Baharvand, H. & Salekdeh, G. H., 1 Sep 2018, In : Molecular and Cellular Proteomics. 17, 9, p. 1670-1684 15 p.

Research output: Contribution to journalArticleResearchpeer-review

Pluripotent Stem Cells
Contactin 2
Stem cells
Purification
Parkinson Disease

Potential protein biomarkers of QX disease resistance in selectively bred Sydney Rock Oysters

Vaibhav, V., Thompson, E. L., Raftos, D. A. & Haynes, P. A., 1 Oct 2018, In : Aquaculture. 495, p. 144-152 9 p.

Research output: Contribution to journalArticleResearchpeer-review

Saccostrea glomerata
disease resistance
biomarker
biomarkers
breeds

Prospective isolation of ISL1+ cardiac progenitors from human ESCs for myocardial infarction therapy

Ghazizadeh, Z., Fattahi, F., Mirzaei, M., Bayersaikhan, D., Lee, J., Chae, S., Hwang, D., Byun, K., Tabar, M. S., Taleahmad, S., Mirshahvaladi, S., Shabani, P., Fonoudi, H., Haynes, P. A., Baharvand, H., Aghdami, N., Evans, T., Lee, B. & Salekdeh, G. H., 13 Mar 2018, In : Stem Cell Reports. 10, 3, p. 848-859 12 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Activated-Leukocyte Cell Adhesion Molecule
Muscle
Myocardial Infarction
Stem cells
Smooth Muscle Myocytes

Shotgun proteomic analysis of photoperiod regulated dormancy induction in grapevine

George, I. S., Fennell, A. Y. & Haynes, P. A., 15 Sep 2018, In : Journal of Proteomics. 187, p. 13-24 12 p.

Research output: Contribution to journalArticleResearchpeer-review

Photoperiod
Firearms
Proteomics
Genotype
Proteins

Surface markers of human embryonic stem cells: a meta analysis of membrane proteomics reports

Shekari, F., Han, C. L., Lee, J., Mirzaei, M., Gupta, V., Haynes, P. A., Lee, B., Baharvand, H., Chen, Y. J. & Hosseini Salekdeh, G., 2 Nov 2018, In : Expert Review of Proteomics. 15, 11, p. 911-922 12 p.

Research output: Contribution to journalReview articleResearchpeer-review

Stem cells
Proteomics
Meta-Analysis
Membrane Proteins
Membranes

The Art of validating quantitative proteomics data

Handler, D. C., Pascovici, D., Mirzaei, M., Gupta, V., Salekdeh, G. H. & Haynes, P. A., Dec 2018, In : Proteomics. 18, 23, p. 1-6 6 p., 1800222.

Research output: Contribution to journalArticleResearchpeer-review

Art
Proteomics
Western Blotting
Publications
Guidelines
2017

Age-related neurodegenerative disease associated pathways identified in retinal and vitreous proteome from human glaucoma eyes

Mirzaei, M., Gupta, V. B., Chick, J. M., Greco, T. M., Wu, Y., Chitranshi, N., Wall, R. V., Hone, E., Deng, L., Dheer, Y., Abbasi, M., Rezaeian, M., Braidy, N., You, Y., Salekdeh, G. H., Haynes, P. A., Molloy, M. P., Martins, R., Cristea, I. M., Gygi, S. P. & 2 othersGraham, S. L. & Gupta, V. K., 4 Oct 2017, In : Scientific Reports. 7, 1, p. 1-16 16 p., 12685.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Proteome
Neurodegenerative Diseases
Glaucoma
Proteins
Vitreous Body

Early and late responses of grapevine (Vitis vinifera L.) to water deficit: a proteomics perspective

Cramer, G. R., Hopper, D. W., Quilici, D. R., Woolsey, R. J., Cushman, J. C., Vincent, D., Van Sluyter, S. C., George, I. & Haynes, P. A., 26 Apr 2017, Proceedings of the IX International Symposium on Grapevine Physiology and Biotechnology. Pinto, M. (ed.). The Netherlands: International Society for Horticultural Science, p. 263-272 10 p. (Acta Horticulturae; vol. 1157).

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearchpeer-review

Vitis vinifera
proteomics
proteins
water
osmotic stress

Low focal adhesion signaling promotes ground state pluripotency of mouse embryonic stem cells

Taleahmad, S., Mirzaei, M., Samadian, A., Hassani, S. N., Haynes, P. A., Salekdeh, G. H. & Baharvand, H., 2017, In : Journal of Proteome Research. 16, 10, p. 3585-3595 11 p.

Research output: Contribution to journalArticleResearchpeer-review

Focal Adhesions
Stem cells
Ground state
Adhesion
Serum

Proteomic analysis of disease in Sydney rock oysters

Vaibhav, V., Thompson, E., Raftos, D. & Haynes, P. A., 5 Apr 2017, Proteomics in Food Science: from Farm to Fork. Colgrave, M. L. (ed.). London ; San Diego ; Cambridge ; Oxford: Elsevier, p. 343-357 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapterResearchpeer-review

Saccostrea glomerata
Ostreidae
Proteomics
proteomics
oysters

Proteomics of rice - our most valuable food crop

Wu, Y., Mirzaei, M. & Haynes, P. A., 5 Apr 2017, Proteomics in Food Science: from Farm to Fork. Colgrave, M. L. (ed.). London ; San Diego ; Cambridge ; Oxford: Elsevier, p. 17-33 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapterResearchpeer-review

food crops
Climate change
Proteomics
proteomics
Crops

Quantitative proteomic analysis of human testis reveals system-wide molecular and cellular pathways associated with non-obstructive azoospermia

Alikhani, M., Mirzaei, M., Sabbaghian, M., Parsamatin, P., Karamzadeh, R., Adib, S., Sodeifi, N., Gilani, M. A. S., Zabet-Moghaddam, M., Parker, L., Wu, Y., Gupta, V., Haynes, P. A., Gourabi, H., Baharvand, H. & Salekdeh, G. H., 6 Jun 2017, In : Journal of Proteomics. 162, p. 141-154 14 p.

Research output: Contribution to journalArticleResearchpeer-review

Azoospermia
Sertoli Cell-Only Syndrome
Proteomics
Testis
Male Infertility

The proteomic profile of rice mitosis under drought stress

Haynes, P. A., Wu, Y., Mirzaei, M., Pascovici, D. & Atwell, B. J., 2017.

Research output: Contribution to conferenceAbstractResearch

proteomics
mitosis
water stress
drought
rice

TMT one-stop shop: from reliable sample preparation to computational analysis platform

Mirzaei, M., Pascovici, D., Wu, J. X., Chick, J., Wu, Y., Cooke, B., Haynes, P. & Molloy, M. P., 2017, Proteome Bioinformatics: Methods in Molecular Biology. Keerthikumar, S. & Mathivanan, S. (eds.). New York: Humana Press Inc., Vol. 1549. p. 45-66 22 p. (Methods in Molecular Biology; vol. 1549).

Research output: Chapter in Book/Report/Conference proceedingChapterResearchpeer-review

Workflow
Proteome
Proteomics
Multivariate Analysis
2016

Applications of quantitative proteomics in plant research

Mirzaei, M., Wu, Y., Handler, D., Maher, T., Pascovici, D., Ravishankar, P., Moghaddam, M. Z., Haynes, P. A., Salekdeh, G. H., Chick, J. M. & Willows, R. D., 1 Jan 2016, Agricultural proteomics volume 1: Crops, horticulture, farm animals, food, insect and microorganisms. Salekdeh, G. H. (ed.). Switzerland: Springer, Springer Nature, Vol. 1. p. 1-29 29 p.

Research output: Chapter in Book/Report/Conference proceedingChapterResearchpeer-review

Proteomics
proteomics
Research
instrumentation
Bioinformatics

Biomarkers of Winter Mortality resistance in selectively bred Sydney rock oysters (Saccostrea glomerata)

Vaibhav, V., Lepretre, M., Thompson, E., Raftos, D. & Haynes, P. A., 1 Dec 2016, In : Aquaculture. 465, p. 323-329 7 p.

Research output: Contribution to journalArticleResearchpeer-review

Saccostrea glomerata
biomarker
biomarkers
breeds
mortality

Data quality issues in proteomics – there are many paths to enlightenment

Haynes, P. A., Stein, S. E. & Washburn, M. P., 1 Sep 2016, In : Proteomics. 16, 18, p. 2433-2434 2 p.

Research output: Contribution to journalEditorialResearchpeer-review

Effects of low temperature on tropical and temperate isolates of marine Synechococcus

Varkey, D., Mazard, S., Ostrowski, M., Tetu, S. G., Haynes, P. & Paulsen, I. T., 1 May 2016, In : ISME Journal. 10, 5, p. 1252-1263 12 p.

Research output: Contribution to journalArticleResearchpeer-review

Synechococcus
Temperature
protein
Photosynthesis
photosynthesis

Extended exposure to sugar and/or caffeine produces distinct behavioral and neurochemical profiles in the orbitofrontal cortex of rats: Implications for neural function

Franklin, J. L., Mirzaei, M., Wearne, T. A., Homewood, J., Goodchild, A. K., Haynes, P. A. & Cornish, J. L., 1 Nov 2016, In : Proteomics. 16, 22, p. 2894-2910 17 p.

Research output: Contribution to journalArticleResearchpeer-review

Caffeine
Prefrontal Cortex
Sugars
Rats
Proteomics
Inflammation
Biopsy
Immune Response
muscles
Acute

Induction of virulence factors in giardia duodenalis independent of host attachment

Emery, S. J., Mirzaei, M., Vuong, D., Pascovici, D., Chick, J. M., Lacey, E. & Haynes, P. A., 12 Feb 2016, In : Scientific Reports. 6, p. 1-16 16 p., 20765.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Giardia lamblia
Trophozoites
Virulence Factors
Host-Parasite Interactions
Reactive Oxygen Species

Multiple testing corrections in quantitative proteomics: a useful but blunt tool

Pascovici, D., Handler, D. C. L., Wu, J. X. & Haynes, P. A., 1 Sep 2016, In : Proteomics. 16, 18, p. 2448-2453 6 p.

Research output: Contribution to journalArticleResearchpeer-review

Proteomics
Testing
Rubber
Availability
Costs and Cost Analysis

PlantPReS: a database for plant proteome response to stress

Mousavi, S. A., Pouya, F. M., Ghaffari, M. R., Mirzaei, M., Ghaffari, A., Alikhani, M., Ghareyazie, M., Komatsu, S., Haynes, P. A. & Salekdeh, G. H., 30 Jun 2016, In : Journal of Proteomics. 143, p. 69-72 4 p.

Research output: Contribution to journalArticleResearchpeer-review

Proteome
Data Mining
Databases
Heat-Shock Proteins
Proteomics

Post-translational processing targets functionally diverse proteins in Mycoplasma hyopneumoniae

Tacchi, J. L., Raymond, B. B. A., Haynes, P. A., Berry, I. J., Widjaja, M., Bogema, D. R., Woolley, L. K., Jenkins, C., Minion, F. C., Padula, M. P. & Djordjevic, S. P., 1 Feb 2016, In : Open Biology. 6, 2, p. 1-18 18 p., 150210.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Mycoplasma hyopneumoniae
Processing
Proteins
Membrane Proteins
Proteome

Quantitative proteomic analysis of human testis reveals system-wide molecular pathways associated with non-obstructive Azoospermia: Poster presentation

Mirzaei, M., Alikhani, M., Sabbaghian, M., Gilani, M. A. S., Moghaddam, M. Z., Wu, Y., Haynes, P. A. & Salekdeh, H., 19 Jun 2016.

Research output: Contribution to conferencePosterResearchpeer-review

Posters
Azoospermia
Male Infertility
Proteomics
Testis
Frontal Lobe
Caffeine
Prefrontal Cortex
Proteomics
Rats
Drought
Droughts
Proteomics
Machinery
Peptide Hydrolases

Quantitative proteomics in Giardia duodenalis—achievements and challenges

Emery, S. J., Lacey, E. & Haynes, P. A., 1 Aug 2016, In : Molecular and Biochemical Parasitology. 208, 2, p. 96-112 17 p.

Research output: Contribution to journalReview articleResearchpeer-review

Giardia lamblia
Proteomics
Giardia
Parasites
Post Translational Protein Processing

Quantitative shotgun proteomics reveals extensive changes to the proteome of the orbitofrontal cortex in rats that are hyperactive following withdrawal from a high sugar diet

Franklin, J. L., Mirzaei, M., Wearne, T. A., Sauer, M. K., Homewood, J., Goodchild, A. K., Haynes, P. A. & Cornish, J. L., 1 Feb 2016, In : Proteomics. 16, 4, p. 657-673 17 p.

Research output: Contribution to journalArticleResearchpeer-review

Firearms
Proteome
Nutrition
Prefrontal Cortex
Sugars

Relative quantification of phosphoproteomic changes in grapevine (Vitis vinifera L.) leaves in response to abscisic acid

Rattanakan, S., George, I., Haynes, P. A. & Cramer, G. R., 22 Jul 2016, In : Horticulture research. 3, p. 1-9 9 p., 16029.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

The biology of environmental stress: molecular biomarkers in Sydney rock oysters (Saccostrea glomerata)

Raftos, D. A., Melwani, A. R., Haynes, P. A., Muralidharan, S., Birch, G. F., Amaral, V., Thompson, E. L. & Taylor, D., 1 Sep 2016, In : Environmental Sciences: Processes and Impacts. 18, 9, p. 1129-1139 11 p.

Research output: Contribution to journalReview articleResearchpeer-review

Ostreidae
Biomarkers
environmental stress
biomarker
Chemical contamination
2015

Behavioural sensitisation to methamphetamine alters protein expression in the ventral hippocampus: implications for psychosis

Sauer, M., Mirzaei, M., Wearne, T., Goodchild, A., Haynes, P. & Cornish, J., Aug 2015, In : Journal of Neurochemistry. 134, p. 355-355 1 p.

Research output: Contribution to journalMeeting abstractResearch

Data from a proteomic baseline study of Assemblage A in Giardia duodenalis

Emery, S. J., Lacey, E. & Haynes, P. A., 1 Dec 2015, In : Data in Brief. 5, p. 23-27 5 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

DDX3Y, a male-specific region of y chromosome gene, may modulate neuronal differentiation

Vakilian, H., Mirzaei, M., Sharifi Tabar, M., Pooyan, P., Habibi Rezaee, L., Parker, L., Haynes, P. A., Gourabi, H., Baharvand, H. & Salekdeh, G. H., 4 Sep 2015, In : Journal of Proteome Research. 14, 9, p. 3474-3483 10 p.

Research output: Contribution to journalArticleResearchpeer-review

Chromosomes
Genes
Y-Linked Genes
Cells
Proteomics

Five omic technologies are concordant in differentiating the biochemical characteristics of the berries of five grapevine (Vitis vinifera L.) cultivars

Ghan, R., Van Sluyter, S. C., Hochberg, U., Degu, A., Hopper, D. W., Tillet, R. L., Schlauch, K. A., Haynes, P. A., Fait, A. & Cramer, G. R., 16 Nov 2015, In : BMC Genomics. 16, p. p.946-1-946-26 26 p., 946.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Vitis
Fruit
Technology
Mass Spectrometry
Proteins

Inter-laboratory evaluation of instrument platforms and experimental workflows for quantitative accuracy and reproducibility assessment

Percy, A. J., Tamura-Wells, J., Albar, J. P., Aloria, K., Amirkhani, A., Araujo, G. D. T., Arizmendi, J. M., Blanco, F. J., Canals, F., Cho, J. Y., Colomé-Calls, N., Corrales, F. J., Domont, G., Espadas, G., Fernandez-Puente, P., Gil, C., Haynes, P. A., Hernáez, M. L., Kim, J. Y., Kopylov, A. & 16 othersMarcilla, M., McKay, M. J., Mirzaei, M., Molloy, M. P., Ohlund, L. B., Paik, Y. K., Paradela, A., Raftery, M., Sabidó, E., Sleno, L., Wilffert, D., Wolters, J. C., Yoo, J. S., Zgoda, V., Parker, C. E. & Borchers, C. H., 1 Sep 2015, In : EuPA Open Proteomics. 8, p. 6-15 10 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Workflow
Quality Control
Blood Proteins
Quality control
Methamphetamine
Proteome
Prefrontal Cortex
Psychotic Disorders
Maintenance

Molecular changes in the adrenal medulla and brain following glucoprivation

Goodchild, A. K., Wisinski-Bokiniec, P., Hassan, S. F., Haynes, P., Parker, L. M., Vander Wall, R., Moghaddam, M. & Mirzaei, M., 2015, In : Autonomic Neuroscience: Basic and Clinical. 192, p. 45-46 2 p.

Research output: Contribution to journalMeeting abstractResearch

Adrenal Medulla
Chromaffin Cells
Brain
Hypoglycemia
Adrenergic Agents

Protein identification and quantification from riverbank grape, Vitis riparia: comparing SDS-PAGE and FASP-GPF techniques for shotgun proteomic analysis

George, I. S., Fennell, A. Y. & Haynes, P. A., 1 Sep 2015, In : Proteomics. 15, 17, p. 3061-3065 5 p.

Research output: Contribution to journalArticleResearchpeer-review

Vitis
Firearms
Fractionation
Proteomics
Polyacrylamide Gel Electrophoresis

Proteome analysis of ground state pluripotency

Taleahmad, S., Mirzaei, M., Parker, L. M., Hassani, S. N., Mollamohammadi, S., Sharifi-Zarchi, A., Haynes, P. A., Baharvand, H. & Salekdeh, G. H., 16 Dec 2015, In : Scientific Reports. 5, p. 1-10 10 p., 17985.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Proteome
Embryonic Stem Cells
Proteins
Serum
Down-Regulation