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Research Outputs

2020
Open Access
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1 Downloads (Pure)
2019
Open Access
File
1 Citation (Scopus)
8 Downloads (Pure)
Open Access
File
36 Downloads (Pure)

Plant–microbe symbiosis: what has proteomics taught us?

Khatabi, B., Gharechahi, J., Ghaffari, M. R., Liu, D., Haynes, P. A., McKay, M. J., Mirzaei, M. & Salekdeh, G. H., Aug 2019, In : Proteomics. 19, 16, 20 p., 1800105.

Research output: Contribution to journalReview article

1 Citation (Scopus)

Proteomes of leaf-growing zones in rice genotypes with contrasting drought tolerance

Wu, Y., Mirzaei, M., Pascovici, D., Haynes, P. A. & Atwell, B. J., May 2019, In : Proteomics. 19, 9, p. 1-11 11 p., 1800310.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Proteomic characterisation of Ancient Egyptian skin, bones and textiles

Multari, D., Ravishankar, P., Lord, C., Fraser, J., Power, R. & Haynes, P. A., 2019, 18th Human Proteome Organization World Congress. Human Proteome Organisation (HUPO), 1 p. 34

Research output: Chapter in Book/Report/Conference proceedingConference abstract

Root endophytic fungus Piriformospora indica improves drought stress adaptation in barley by metabolic and proteomic reprogramming

Ghaffari, M. R., Mirzaei, M., Ghabooli, M., Khatabi, B., Wu, Y., Zabet-Moghaddam, M., Mohammadi-Nejad, G., Haynes, P. A., Hajirezaei, M. R., Sepehri, M. & Salekdeh, G. H., 1 Jan 2019, In : Environmental and Experimental Botany. 157, p. 197-210 14 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)

The quest for missing proteins in rice

Rahiminejad, M., Ledari, M. T., Mirzaei, M., Ghorbanzadeh, Z., Kavousi, K., Ghaffari, M. R., Haynes, P. A., Komatsu, S. & Salekdeh, G. H., 7 Jan 2019, In : Molecular Plant. 12, 1, p. 4-6 3 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)
2 Citations (Scopus)
2018

Differential protein expression and post-translational modifications in metronidazole-resistant Giardia duodenalis

Emery, S. J., Baker, L., Ansell, B. R. E., Mirzaei, M., Haynes, P. A., McConville, M. J., Svärd, S. G. & Jex, A. R., 1 Apr 2018, In : GigaScience. 7, 4, p. 1-22 22 p., giy024.

Research output: Contribution to journalArticle

Open Access
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10 Citations (Scopus)
37 Downloads (Pure)

Discovery of novel cell surface markers for purification of embryonic dopamine progenitors for transplantation in Parkinson's disease animal models

Fathi, A., Mirzaei, M., Dolatyar, B., Sharifitabar, M., Bayat, M., Shahbazi, E., Lee, J., Javan, M., Zhang, S-C., Gupta, V., Lee, B., Haynes, P. A., Baharvand, H. & Salekdeh, G. H., 1 Sep 2018, In : Molecular and Cellular Proteomics. 17, 9, p. 1670-1684 15 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Potential protein biomarkers of QX disease resistance in selectively bred Sydney Rock Oysters

Vaibhav, V., Thompson, E. L., Raftos, D. A. & Haynes, P. A., 1 Oct 2018, In : Aquaculture. 495, p. 144-152 9 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Prospective isolation of ISL1+ cardiac progenitors from human ESCs for myocardial infarction therapy

Ghazizadeh, Z., Fattahi, F., Mirzaei, M., Bayersaikhan, D., Lee, J., Chae, S., Hwang, D., Byun, K., Tabar, M. S., Taleahmad, S., Mirshahvaladi, S., Shabani, P., Fonoudi, H., Haynes, P. A., Baharvand, H., Aghdami, N., Evans, T., Lee, B. & Salekdeh, G. H., 13 Mar 2018, In : Stem Cell Reports. 10, 3, p. 848-859 12 p.

Research output: Contribution to journalArticle

Open Access
File
6 Citations (Scopus)
12 Downloads (Pure)

Shotgun proteomic analysis of photoperiod regulated dormancy induction in grapevine

George, I. S., Fennell, A. Y. & Haynes, P. A., 15 Sep 2018, In : Journal of Proteomics. 187, p. 13-24 12 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Surface markers of human embryonic stem cells: a meta analysis of membrane proteomics reports

Shekari, F., Han, C. L., Lee, J., Mirzaei, M., Gupta, V., Haynes, P. A., Lee, B., Baharvand, H., Chen, Y. J. & Hosseini Salekdeh, G., 2 Nov 2018, In : Expert Review of Proteomics. 15, 11, p. 911-922 12 p.

Research output: Contribution to journalReview article

2 Citations (Scopus)

The Art of validating quantitative proteomics data

Handler, D. C., Pascovici, D., Mirzaei, M., Gupta, V., Salekdeh, G. H. & Haynes, P. A., Dec 2018, In : Proteomics. 18, 23, p. 1-6 6 p., 1800222.

Research output: Contribution to journalArticle

1 Citation (Scopus)
2017

Age-related neurodegenerative disease associated pathways identified in retinal and vitreous proteome from human glaucoma eyes

Mirzaei, M., Gupta, V. B., Chick, J. M., Greco, T. M., Wu, Y., Chitranshi, N., Wall, R. V., Hone, E., Deng, L., Dheer, Y., Abbasi, M., Rezaeian, M., Braidy, N., You, Y., Salekdeh, G. H., Haynes, P. A., Molloy, M. P., Martins, R., Cristea, I. M., Gygi, S. P. & 2 others, Graham, S. L. & Gupta, V. K., 4 Oct 2017, In : Scientific Reports. 7, 1, p. 1-16 16 p., 12685.

Research output: Contribution to journalArticle

Open Access
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23 Citations (Scopus)
25 Downloads (Pure)

Early and late responses of grapevine (Vitis vinifera L.) to water deficit: a proteomics perspective

Cramer, G. R., Hopper, D. W., Quilici, D. R., Woolsey, R. J., Cushman, J. C., Vincent, D., Van Sluyter, S. C., George, I. & Haynes, P. A., 26 Apr 2017, Proceedings of the IX International Symposium on Grapevine Physiology and Biotechnology. Pinto, M. (ed.). The Netherlands: International Society for Horticultural Science, p. 263-272 10 p. (Acta Horticulturae; vol. 1157).

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contribution

Low focal adhesion signaling promotes ground state pluripotency of mouse embryonic stem cells

Taleahmad, S., Mirzaei, M., Samadian, A., Hassani, S. N., Haynes, P. A., Salekdeh, G. H. & Baharvand, H., 2017, In : Journal of Proteome Research. 16, 10, p. 3585-3595 11 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)

Proteomic analysis of disease in Sydney rock oysters

Vaibhav, V., Thompson, E., Raftos, D. & Haynes, P. A., 5 Apr 2017, Proteomics in Food Science: from Farm to Fork. Colgrave, M. L. (ed.). London ; San Diego ; Cambridge ; Oxford: Elsevier, p. 343-357 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

Proteomics of rice - our most valuable food crop

Wu, Y., Mirzaei, M. & Haynes, P. A., 5 Apr 2017, Proteomics in Food Science: from Farm to Fork. Colgrave, M. L. (ed.). London ; San Diego ; Cambridge ; Oxford: Elsevier, p. 17-33 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Quantitative proteomic analysis of human testis reveals system-wide molecular and cellular pathways associated with non-obstructive azoospermia

Alikhani, M., Mirzaei, M., Sabbaghian, M., Parsamatin, P., Karamzadeh, R., Adib, S., Sodeifi, N., Gilani, M. A. S., Zabet-Moghaddam, M., Parker, L., Wu, Y., Gupta, V., Haynes, P. A., Gourabi, H., Baharvand, H. & Salekdeh, G. H., 6 Jun 2017, In : Journal of Proteomics. 162, p. 141-154 14 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)

TMT one-stop shop: from reliable sample preparation to computational analysis platform

Mirzaei, M., Pascovici, D., Wu, J. X., Chick, J., Wu, Y., Cooke, B., Haynes, P. & Molloy, M. P., 2017, Proteome Bioinformatics: Methods in Molecular Biology. Keerthikumar, S. & Mathivanan, S. (eds.). New York: Humana Press Inc., Vol. 1549. p. 45-66 22 p. (Methods in Molecular Biology; vol. 1549).

Research output: Chapter in Book/Report/Conference proceedingChapter

6 Citations (Scopus)
2016

Applications of quantitative proteomics in plant research

Mirzaei, M., Wu, Y., Handler, D., Maher, T., Pascovici, D., Ravishankar, P., Moghaddam, M. Z., Haynes, P. A., Salekdeh, G. H., Chick, J. M. & Willows, R. D., 1 Jan 2016, Agricultural proteomics volume 1: Crops, horticulture, farm animals, food, insect and microorganisms. Salekdeh, G. H. (ed.). Switzerland: Springer, Springer Nature, Vol. 1. p. 1-29 29 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Citations (Scopus)

Biomarkers of Winter Mortality resistance in selectively bred Sydney rock oysters (Saccostrea glomerata)

Vaibhav, V., Lepretre, M., Thompson, E., Raftos, D. & Haynes, P. A., 1 Dec 2016, In : Aquaculture. 465, p. 323-329 7 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)

Data quality issues in proteomics – there are many paths to enlightenment

Haynes, P. A., Stein, S. E. & Washburn, M. P., 1 Sep 2016, In : Proteomics. 16, 18, p. 2433-2434 2 p.

Research output: Contribution to journalEditorial

2 Citations (Scopus)

Effects of low temperature on tropical and temperate isolates of marine Synechococcus

Varkey, D., Mazard, S., Ostrowski, M., Tetu, S. G., Haynes, P. & Paulsen, I. T., 1 May 2016, In : ISME Journal. 10, 5, p. 1252-1263 12 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)
1 Citation (Scopus)
3 Citations (Scopus)

Induction of virulence factors in giardia duodenalis independent of host attachment

Emery, S. J., Mirzaei, M., Vuong, D., Pascovici, D., Chick, J. M., Lacey, E. & Haynes, P. A., 12 Feb 2016, In : Scientific Reports. 6, p. 1-16 16 p., 20765.

Research output: Contribution to journalArticle

Open Access
File
21 Citations (Scopus)
8 Downloads (Pure)

Multiple testing corrections in quantitative proteomics: a useful but blunt tool

Pascovici, D., Handler, D. C. L., Wu, J. X. & Haynes, P. A., 1 Sep 2016, In : Proteomics. 16, 18, p. 2448-2453 6 p.

Research output: Contribution to journalArticle

37 Citations (Scopus)

PlantPReS: a database for plant proteome response to stress

Mousavi, S. A., Pouya, F. M., Ghaffari, M. R., Mirzaei, M., Ghaffari, A., Alikhani, M., Ghareyazie, M., Komatsu, S., Haynes, P. A. & Salekdeh, G. H., 30 Jun 2016, In : Journal of Proteomics. 143, p. 69-72 4 p.

Research output: Contribution to journalArticle

17 Citations (Scopus)

Post-translational processing targets functionally diverse proteins in Mycoplasma hyopneumoniae

Tacchi, J. L., Raymond, B. B. A., Haynes, P. A., Berry, I. J., Widjaja, M., Bogema, D. R., Woolley, L. K., Jenkins, C., Minion, F. C., Padula, M. P. & Djordjevic, S. P., 1 Feb 2016, In : Open Biology. 6, 2, p. 1-18 18 p., 150210.

Research output: Contribution to journalArticle

Open Access
File
24 Citations (Scopus)
8 Downloads (Pure)

Quantitative proteomic analysis of human testis reveals system-wide molecular pathways associated with non-obstructive Azoospermia: Poster presentation

Mirzaei, M., Alikhani, M., Sabbaghian, M., Gilani, M. A. S., Moghaddam, M. Z., Wu, Y., Haynes, P. A. & Salekdeh, H., 19 Jun 2016.

Research output: Contribution to conferencePoster

5 Citations (Scopus)
21 Citations (Scopus)

Quantitative proteomics in Giardia duodenalis—achievements and challenges

Emery, S. J., Lacey, E. & Haynes, P. A., 1 Aug 2016, In : Molecular and Biochemical Parasitology. 208, 2, p. 96-112 17 p.

Research output: Contribution to journalReview article

4 Citations (Scopus)
7 Citations (Scopus)

Relative quantification of phosphoproteomic changes in grapevine (Vitis vinifera L.) leaves in response to abscisic acid

Rattanakan, S., George, I., Haynes, P. A. & Cramer, G. R., 22 Jul 2016, In : Horticulture research. 3, p. 1-9 9 p., 16029.

Research output: Contribution to journalArticle

Open Access
File
7 Citations (Scopus)
29 Downloads (Pure)

The biology of environmental stress: molecular biomarkers in Sydney rock oysters (Saccostrea glomerata)

Raftos, D. A., Melwani, A. R., Haynes, P. A., Muralidharan, S., Birch, G. F., Amaral, V., Thompson, E. L. & Taylor, D., 1 Sep 2016, In : Environmental Sciences: Processes and Impacts. 18, 9, p. 1129-1139 11 p.

Research output: Contribution to journalReview article

4 Citations (Scopus)

Data from a proteomic baseline study of Assemblage A in Giardia duodenalis

Emery, S. J., Lacey, E. & Haynes, P. A., 1 Dec 2015, In : Data in Brief. 5, p. 23-27 5 p.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
8 Downloads (Pure)

DDX3Y, a male-specific region of y chromosome gene, may modulate neuronal differentiation

Vakilian, H., Mirzaei, M., Sharifi Tabar, M., Pooyan, P., Habibi Rezaee, L., Parker, L., Haynes, P. A., Gourabi, H., Baharvand, H. & Salekdeh, G. H., 4 Sep 2015, In : Journal of Proteome Research. 14, 9, p. 3474-3483 10 p.

Research output: Contribution to journalArticle

18 Citations (Scopus)

Five omic technologies are concordant in differentiating the biochemical characteristics of the berries of five grapevine (Vitis vinifera L.) cultivars

Ghan, R., Van Sluyter, S. C., Hochberg, U., Degu, A., Hopper, D. W., Tillet, R. L., Schlauch, K. A., Haynes, P. A., Fait, A. & Cramer, G. R., 16 Nov 2015, In : BMC Genomics. 16, p. p.946-1-946-26 26 p., 946.

Research output: Contribution to journalArticle

Open Access
File
21 Citations (Scopus)
16 Downloads (Pure)

Inter-laboratory evaluation of instrument platforms and experimental workflows for quantitative accuracy and reproducibility assessment

Percy, A. J., Tamura-Wells, J., Albar, J. P., Aloria, K., Amirkhani, A., Araujo, G. D. T., Arizmendi, J. M., Blanco, F. J., Canals, F., Cho, J. Y., Colomé-Calls, N., Corrales, F. J., Domont, G., Espadas, G., Fernandez-Puente, P., Gil, C., Haynes, P. A., Hernáez, M. L., Kim, J. Y., Kopylov, A. & 16 others, Marcilla, M., McKay, M. J., Mirzaei, M., Molloy, M. P., Ohlund, L. B., Paik, Y. K., Paradela, A., Raftery, M., Sabidó, E., Sleno, L., Wilffert, D., Wolters, J. C., Yoo, J. S., Zgoda, V., Parker, C. E. & Borchers, C. H., 1 Sep 2015, In : EuPA Open Proteomics. 8, p. 6-15 10 p.

Research output: Contribution to journalArticle

Open Access
File
24 Citations (Scopus)
9 Downloads (Pure)
22 Citations (Scopus)

Molecular changes in the adrenal medulla and brain following glucoprivation

Goodchild, A. K., Wisinski-Bokiniec, P., Hassan, S. F., Haynes, P., Parker, L. M., Vander Wall, R., Moghaddam, M. & Mirzaei, M., 2015, In : Autonomic Neuroscience: Basic and Clinical. 192, p. 45-46 2 p.

Research output: Contribution to journalMeeting abstract

9 Citations (Scopus)