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2020
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Open Access
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1 Citation (Scopus)
4 Downloads (Pure)
2019
Open Access
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2 Citations (Scopus)
12 Downloads (Pure)
1 Citation (Scopus)
Open Access
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42 Downloads (Pure)

Proteomes of leaf-growing zones in rice genotypes with contrasting drought tolerance

Wu, Y., Mirzaei, M., Pascovici, D., Haynes, P. A. & Atwell, B. J., May 2019, In : Proteomics. 19, 9, p. 1-11 11 p., 1800310.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Root endophytic fungus Piriformospora indica improves drought stress adaptation in barley by metabolic and proteomic reprogramming

Ghaffari, M. R., Mirzaei, M., Ghabooli, M., Khatabi, B., Wu, Y., Zabet-Moghaddam, M., Mohammadi-Nejad, G., Haynes, P. A., Hajirezaei, M. R., Sepehri, M. & Salekdeh, G. H., 1 Jan 2019, In : Environmental and Experimental Botany. 157, p. 197-210 14 p.

Research output: Contribution to journalArticle

13 Citations (Scopus)

The quest for missing proteins in rice

Rahiminejad, M., Ledari, M. T., Mirzaei, M., Ghorbanzadeh, Z., Kavousi, K., Ghaffari, M. R., Haynes, P. A., Komatsu, S. & Salekdeh, G. H., 7 Jan 2019, In : Molecular Plant. 12, 1, p. 4-6 3 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)
3 Citations (Scopus)
2018

Differential protein expression and post-translational modifications in metronidazole-resistant Giardia duodenalis

Emery, S. J., Baker, L., Ansell, B. R. E., Mirzaei, M., Haynes, P. A., McConville, M. J., Svärd, S. G. & Jex, A. R., 1 Apr 2018, In : GigaScience. 7, 4, p. 1-22 22 p., giy024.

Research output: Contribution to journalArticle

Open Access
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11 Citations (Scopus)
40 Downloads (Pure)

Discovery of novel cell surface markers for purification of embryonic dopamine progenitors for transplantation in Parkinson's disease animal models

Fathi, A., Mirzaei, M., Dolatyar, B., Sharifitabar, M., Bayat, M., Shahbazi, E., Lee, J., Javan, M., Zhang, S-C., Gupta, V., Lee, B., Haynes, P. A., Baharvand, H. & Salekdeh, G. H., 1 Sep 2018, In : Molecular and Cellular Proteomics. 17, 9, p. 1670-1684 15 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Potential protein biomarkers of QX disease resistance in selectively bred Sydney Rock Oysters

Vaibhav, V., Thompson, E. L., Raftos, D. A. & Haynes, P. A., 1 Oct 2018, In : Aquaculture. 495, p. 144-152 9 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Prospective isolation of ISL1+ cardiac progenitors from human ESCs for myocardial infarction therapy

Ghazizadeh, Z., Fattahi, F., Mirzaei, M., Bayersaikhan, D., Lee, J., Chae, S., Hwang, D., Byun, K., Tabar, M. S., Taleahmad, S., Mirshahvaladi, S., Shabani, P., Fonoudi, H., Haynes, P. A., Baharvand, H., Aghdami, N., Evans, T., Lee, B. & Salekdeh, G. H., 13 Mar 2018, In : Stem Cell Reports. 10, 3, p. 848-859 12 p.

Research output: Contribution to journalArticle

Open Access
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7 Citations (Scopus)
12 Downloads (Pure)

Shotgun proteomic analysis of photoperiod regulated dormancy induction in grapevine

George, I. S., Fennell, A. Y. & Haynes, P. A., 15 Sep 2018, In : Journal of Proteomics. 187, p. 13-24 12 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

The Art of validating quantitative proteomics data

Handler, D. C., Pascovici, D., Mirzaei, M., Gupta, V., Salekdeh, G. H. & Haynes, P. A., Dec 2018, In : Proteomics. 18, 23, p. 1-6 6 p., 1800222.

Research output: Contribution to journalArticle

1 Citation (Scopus)
2017

Age-related neurodegenerative disease associated pathways identified in retinal and vitreous proteome from human glaucoma eyes

Mirzaei, M., Gupta, V. B., Chick, J. M., Greco, T. M., Wu, Y., Chitranshi, N., Wall, R. V., Hone, E., Deng, L., Dheer, Y., Abbasi, M., Rezaeian, M., Braidy, N., You, Y., Salekdeh, G. H., Haynes, P. A., Molloy, M. P., Martins, R., Cristea, I. M., Gygi, S. P. & 2 others, Graham, S. L. & Gupta, V. K., 4 Oct 2017, In : Scientific Reports. 7, 1, p. 1-16 16 p., 12685.

Research output: Contribution to journalArticle

Open Access
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29 Citations (Scopus)
25 Downloads (Pure)

Low focal adhesion signaling promotes ground state pluripotency of mouse embryonic stem cells

Taleahmad, S., Mirzaei, M., Samadian, A., Hassani, S. N., Haynes, P. A., Salekdeh, G. H. & Baharvand, H., 6 Oct 2017, In : Journal of Proteome Research. 16, 10, p. 3585-3595 11 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Quantitative proteomic analysis of human testis reveals system-wide molecular and cellular pathways associated with non-obstructive azoospermia

Alikhani, M., Mirzaei, M., Sabbaghian, M., Parsamatin, P., Karamzadeh, R., Adib, S., Sodeifi, N., Gilani, M. A. S., Zabet-Moghaddam, M., Parker, L., Wu, Y., Gupta, V., Haynes, P. A., Gourabi, H., Baharvand, H. & Salekdeh, G. H., 6 Jun 2017, In : Journal of Proteomics. 162, p. 141-154 14 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)
2016

Biomarkers of Winter Mortality resistance in selectively bred Sydney rock oysters (Saccostrea glomerata)

Vaibhav, V., Lepretre, M., Thompson, E., Raftos, D. & Haynes, P. A., 1 Dec 2016, In : Aquaculture. 465, p. 323-329 7 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Effects of low temperature on tropical and temperate isolates of marine Synechococcus

Varkey, D., Mazard, S., Ostrowski, M., Tetu, S. G., Haynes, P. & Paulsen, I. T., 1 May 2016, In : ISME Journal. 10, 5, p. 1252-1263 12 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)
1 Citation (Scopus)
4 Citations (Scopus)

Induction of virulence factors in giardia duodenalis independent of host attachment

Emery, S. J., Mirzaei, M., Vuong, D., Pascovici, D., Chick, J. M., Lacey, E. & Haynes, P. A., 12 Feb 2016, In : Scientific Reports. 6, p. 1-16 16 p., 20765.

Research output: Contribution to journalArticle

Open Access
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22 Citations (Scopus)
11 Downloads (Pure)

Multiple testing corrections in quantitative proteomics: a useful but blunt tool

Pascovici, D., Handler, D. C. L., Wu, J. X. & Haynes, P. A., 1 Sep 2016, In : Proteomics. 16, 18, p. 2448-2453 6 p.

Research output: Contribution to journalArticle

42 Citations (Scopus)

PlantPReS: a database for plant proteome response to stress

Mousavi, S. A., Pouya, F. M., Ghaffari, M. R., Mirzaei, M., Ghaffari, A., Alikhani, M., Ghareyazie, M., Komatsu, S., Haynes, P. A. & Salekdeh, G. H., 30 Jun 2016, In : Journal of Proteomics. 143, p. 69-72 4 p.

Research output: Contribution to journalArticle

20 Citations (Scopus)

Post-translational processing targets functionally diverse proteins in Mycoplasma hyopneumoniae

Tacchi, J. L., Raymond, B. B. A., Haynes, P. A., Berry, I. J., Widjaja, M., Bogema, D. R., Woolley, L. K., Jenkins, C., Minion, F. C., Padula, M. P. & Djordjevic, S. P., 1 Feb 2016, In : Open Biology. 6, 2, p. 1-18 18 p., 150210.

Research output: Contribution to journalArticle

Open Access
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28 Citations (Scopus)
8 Downloads (Pure)
5 Citations (Scopus)
21 Citations (Scopus)
7 Citations (Scopus)

Relative quantification of phosphoproteomic changes in grapevine (Vitis vinifera L.) leaves in response to abscisic acid

Rattanakan, S., George, I., Haynes, P. A. & Cramer, G. R., 22 Jul 2016, In : Horticulture research. 3, p. 1-9 9 p., 16029.

Research output: Contribution to journalArticle

Open Access
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7 Citations (Scopus)
29 Downloads (Pure)
2015

Data from a proteomic baseline study of Assemblage A in Giardia duodenalis

Emery, S. J., Lacey, E. & Haynes, P. A., 1 Dec 2015, In : Data in Brief. 5, p. 23-27 5 p.

Research output: Contribution to journalArticle

Open Access
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4 Citations (Scopus)
8 Downloads (Pure)

DDX3Y, a male-specific region of y chromosome gene, may modulate neuronal differentiation

Vakilian, H., Mirzaei, M., Sharifi Tabar, M., Pooyan, P., Habibi Rezaee, L., Parker, L., Haynes, P. A., Gourabi, H., Baharvand, H. & Salekdeh, G. H., 4 Sep 2015, In : Journal of Proteome Research. 14, 9, p. 3474-3483 10 p.

Research output: Contribution to journalArticle

20 Citations (Scopus)

Five omic technologies are concordant in differentiating the biochemical characteristics of the berries of five grapevine (Vitis vinifera L.) cultivars

Ghan, R., Van Sluyter, S. C., Hochberg, U., Degu, A., Hopper, D. W., Tillet, R. L., Schlauch, K. A., Haynes, P. A., Fait, A. & Cramer, G. R., 16 Nov 2015, In : BMC Genomics. 16, p. p.946-1-946-26 26 p., 946.

Research output: Contribution to journalArticle

Open Access
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21 Citations (Scopus)
18 Downloads (Pure)

Inter-laboratory evaluation of instrument platforms and experimental workflows for quantitative accuracy and reproducibility assessment

Percy, A. J., Tamura-Wells, J., Albar, J. P., Aloria, K., Amirkhani, A., Araujo, G. D. T., Arizmendi, J. M., Blanco, F. J., Canals, F., Cho, J. Y., Colomé-Calls, N., Corrales, F. J., Domont, G., Espadas, G., Fernandez-Puente, P., Gil, C., Haynes, P. A., Hernáez, M. L., Kim, J. Y., Kopylov, A. & 16 others, Marcilla, M., McKay, M. J., Mirzaei, M., Molloy, M. P., Ohlund, L. B., Paik, Y. K., Paradela, A., Raftery, M., Sabidó, E., Sleno, L., Wilffert, D., Wolters, J. C., Yoo, J. S., Zgoda, V., Parker, C. E. & Borchers, C. H., 1 Sep 2015, In : EuPA Open Proteomics. 8, p. 6-15 10 p.

Research output: Contribution to journalArticle

Open Access
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25 Citations (Scopus)
10 Downloads (Pure)
23 Citations (Scopus)
10 Citations (Scopus)

Proteome analysis of ground state pluripotency

Taleahmad, S., Mirzaei, M., Parker, L. M., Hassani, S. N., Mollamohammadi, S., Sharifi-Zarchi, A., Haynes, P. A., Baharvand, H. & Salekdeh, G. H., 16 Dec 2015, In : Scientific Reports. 5, p. 1-10 10 p., 17985.

Research output: Contribution to journalArticle

Open Access
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19 Citations (Scopus)
14 Downloads (Pure)
21 Citations (Scopus)

Quantitative proteomic analysis of Giardia duodenalis assemblage A: a baseline for host, assemblage, and isolate variation

Emery, S. J., Lacey, E. & Haynes, P. A., 1 Jul 2015, In : Proteomics. 15, 13, p. 2281-2285 5 p.

Research output: Contribution to journalArticle

13 Citations (Scopus)

The generation gap: proteome changes and strain variation during encystation in Giardia duodenalis

Emery, S. J., Pascovi, D., Lacey, E. & Haynes, P. A., May 2015, In : Molecular and Biochemical Parasitology. 201, 1, p. 47-56 10 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)

The Hsp90 inhibitor SNX-7081 is synergistic with fludarabine nucleoside via DNA damage and repair mechanisms in human, p53-negative chronic lymphocytic leukemia

Kaufman, K. L., Jenkins, Y., Alomari, M., Mirzaei, M., Giles Best, O., Pascovici, D., Mactier, S., Mulligan, S. P., Haynes, P. A. & Christopherson, R. I., 2015, In : Oncotarget. 6, 38, p. 40981-40997 17 p.

Research output: Contribution to journalArticle

Open Access
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7 Citations (Scopus)
12 Downloads (Pure)

Two splice variants of y chromosome-located lysine-specific demethylase 5D have distinct function in prostate cancer cell line (DU-145)

Jangravi, Z., Tabar, M. S., Mirzaei, M., Parsamatin, P., Vakilian, H., Alikhani, M., Shabani, M., Haynes, P. A., Goodchild, A. K., Gourabi, H., Baharvand, H. & Salekdeh, G. H., 4 Sep 2015, In : Journal of Proteome Research. 14, 9, p. 3492-3502 11 p.

Research output: Contribution to journalArticle

15 Citations (Scopus)
2014

Current perspectives in proteomic analysis of abiotic stress in Grapevines

George, I. S. & Haynes, P. A., 8 Dec 2014, In : Frontiers in Plant Science. 5, p. 1-5 5 p., 686.

Research output: Contribution to journalArticle

Open Access
File
5 Citations (Scopus)
8 Downloads (Pure)

Manipulating root water supply elicits major shifts in the shoot proteome

Mirzaei, M., Soltani, N., Sarhadi, E., George, I. S., Neilson, K. A., Pascovici, D., Shahbazian, S., Haynes, P. A., Atwell, B. J. & Salekdeh, G. H., 7 Feb 2014, In : Journal of Proteome Research. 13, 2, p. 517-526 10 p.

Research output: Contribution to journalArticle

33 Citations (Scopus)

Proteomic analysis in Giardia duodenalis yields insights into strain virulence and antigenic variation

Emery, S. J., Van Sluyter, S. & Haynes, P. A., 1 Nov 2014, In : Proteomics. 14, 21-22, p. 2523-2534 12 p.

Research output: Contribution to journalArticle

19 Citations (Scopus)
2013

Proteomic analysis indicates massive changes in metabolism prior to the inhibition of growth and photosynthesis of grapevine (Vitis vinifera L.) in response to water deficit

Cramer, G. R., Van Sluyter, S. C., Hopper, D. W., Pascovici, D., Keighley, T. & Haynes, P. A., 21 Mar 2013, In : BMC Plant Biology. 13, p. 1-22 22 p., 49.

Research output: Contribution to journalArticle

Open Access
File
85 Citations (Scopus)
10 Downloads (Pure)

Proteomic analysis of the dorsal and ventral hippocampus of rats maintained on a high fat and refined sugar diet

Francis, H. M., Mirzaei, M., Pardey, M. C., Haynes, P. A. & Cornish, J. L., Oct 2013, In : Proteomics. 13, 20, p. 3076-3091 16 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)

Shotgun label-free quantitative proteomics of water-deficit-stressed midmature peanut (Arachis hypogaea L.) seed

Kottapalli, K. R., Zabet-Moghaddam, M., Rowland, D., Faircloth, W., Mirzaei, M., Haynes, P. A. & Payton, P., 1 Nov 2013, In : Journal of Proteome Research. 12, 11, p. 5048-5057 10 p.

Research output: Contribution to journalArticle

16 Citations (Scopus)

Shotgun Proteomic Analysis of the Mexican Lime Tree Infected with "Candidatus Phytoplasma aurantifolia"

Monavarfeshani, A., Mirzaei, M., Sarhadi, E., Amirkhani, A., Khayam Nekouei, M., Haynes, P. A., Mardi, M. & Salekdeh, G. H., 1 Feb 2013, In : Journal of Proteome Research. 12, 2, p. 785-795 11 p.

Research output: Contribution to journalArticle

40 Citations (Scopus)

Shotgun proteomics of coelomic fluid from the purple sea urchin, Strongylocentrotus purpuratus

Dheilly, N. M., Raftos, D. A., Haynes, P. A., Smith, L. C. & Nair, S. V., May 2013, In : Developmental and Comparative Immunology. 40, 1, p. 35-50 16 p.

Research output: Contribution to journalArticle

20 Citations (Scopus)