Projects per year
Personal profile
Biography
I am a Senior Lecturer (equivalent to Associate Professor in the USA) in Synthetic Biology in the School of Natural Sciences in the Faculty of Science and Engineering and an Associate Investigator in the Centre of Excellence in Synthetic Biology. I completed a PhD in Microbiology and Immunology at the University of British Columbia and an NSERC-funded postdoctoral fellowship in the Bioengineering Department at Stanford University before joining Macquarie University.
Specialties and keywords: Synthetic Biology, Molecular Biology, Genome Engineering, Bacteriophages, Phage Therapy, Antimicrobial Resistance, tRNA, Start Codons, Initiation Codons, Next-Generation Sequencing, Proteomics.
Research interests
My lab is now researching a range of topics in synthetic biology, microbiology, and virology. In particular we are working towards:
Enhancing Phage Therapy
How can we use natural and engineered bacterial viruses (phage) as therapeutics to address the global problem of antibiotic resistant bacteria? We are working to improve phage by using next-generation CRISPR methods to engineer T4 and T7 phages for therapeutic use against uropathogenic E. coli, and other pathogenic bacteria.
Overlapping Genes
Why are nearly 25% of genes in most genomes overlapping? What functional roles do they play, and can we use artificial gene overlaps to slow evolution of engineered systems?
Altered Genetic Codes
How can new genetic codes be used to slow evolution, biocontain GMOs, create orthogonal translation control systems, and add new chemistry to proteins?
Teaching
BMOL3201/6231: Advanced Biochemistry & Cell Biology (2016 - Present)
Unit Convenor and Instructor
Final year undergraduate level lecture and laboratory course
MOLS8411: Molecular Genomics Analysis and Design (2020 - Present)
Unit Convenor, Curriculum Designer, and Instructor
Masters of Biotechnology level unit
Lecture and workshops
MOLS7012: Synthetic Biology (2016 - Present)
Unit Convenor and Instructor
Masters of Research level
Workshops
MOLS7911: Laboratory Skills for Molecular Science Research (2017 - Present)
Instructor for synthetic biology computational lab skills module
Masters of Research level unit
Workshops
BMOL3401: Applied and Medical Microbiology (2020 - Present)
Guest Lecturer on Acellular Pathogens and Person to Person Viral Disease
BMOL2401/6401: Microbiology and Molecular Biology (2016 - Present)
Guest Lecturer on Virus Biology
Research student supervision
As of March 2023, I have been primary supervisor for 7 Masters of Research students (6 completed) and 8 Ph.D. students (3 completed). Alumni from the lab are currently at Altos Labs and Harvard Medical School.
We are always looking for Masters of Research (MRes) and PhD students. Please get in touch if you are interested in what the lab is working on and you think your background would be a good fit.
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Collaborations and top research areas from the last five years
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International Genetically Engineered Machine (iGEM) Competition
Brown, L., Willows, R. & Jaschke, P.
15/05/17 → …
Project: Research
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Biomolecular Discovery and Design Research Centre
Packer, N., Paulsen, I., Nevalainen, H., Haynes, P., Molloy, M., Atwell, B., Barron, A., Beggs, P., Bergquist, P. L., Brown, L., Cornish, J., Chung, R., De Deene, Y., Garcia-Bennett, A., Gillings, M., Goodchild, A., Guillemin, G., Hallinan, J., Hose, G., Jaschke, P., Mabbutt, B., Raftos, D., Ranganathan, S., Sofronov, G., Sunna, A., Tetu, S., Andersen, M., Willows, R., Ahn, C., Breen, E., Campbell, M., Care, A., Cordina, N., Curach, N., Everest Dass, A., Elbourne, L., Goold, H., Hassan, K., Kautto, L., Krisp, C., Kroukamp, H., Lee, A., Lin, C., Mackie, A., McKay, M., McQuade, L., Mirzaei, M., Mohamedali, A., Ostrowski, M., Parker, L., Pascovici, D., Penesyan, A., Shah, B., Sun, A., Thompson, E. & Williams, T.
1/01/17 → …
Project: Research
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MQRIS Large 2023: Nano-flow Cytometry Facility
Wang, Y., Rodger, A., Garcia-Bennett, A., Sunna, A., Cain, A., Ponton, F., Palmisano, G., Thaysen-Andersen, M., Packer, N., Jaschke, P., Inglis, D., Li, M., Nasiri, N., Wu, S., Lu, Y., Volz, T., Shklovskaya, E., Zou, A., Rizos, H., Shi, B., Yang, S., Guller, A. & Tavakkoliyaraki, M.
16/11/22 → 15/11/23
Project: Research
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MQRIS S 2022: High-throughput Phenotyping Platform for PC2 organisms
Semenec, L., Cain, A., Paulsen, I., Hewawasam Gamage, H., Tetu, S., Jaschke, P., Ponton, F. & Maselko, M.
1/01/22 → 31/12/22
Project: Research
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Treatment of multi-drug resistant infections using a novel, rapid and customised synthetic phage therapy platform
Jaschke, P., Weynberg, K., Holowko, M., Barr, J. & Mimee, M.
1/05/20 → 30/04/23
Project: Other
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A bacterial genome assembly and annotation laboratory using a virtual machine
Trofimova, E., Asgharzadeh Kangachar, S., Weynberg, K. D., Willows, R. D. & Jaschke, P. R., May 2023, In: Biochemistry and Molecular Biology Education. 51, 3, p. 276-285 10 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile6 Downloads (Pure) -
Creating de novo overlapped genes
Logel, D. Y. & Jaschke, P. R., 2023, Computational biology and machine learning for metabolic engineering and synthetic biology. Selvarajoo, K. (ed.). New York, NY: Humana Press Inc., p. 95-120 26 p. (Methods in Molecular Biology; vol. 2553).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
1 Citation (Scopus) -
Codon-restrained method for both eliminating and creating intragenic bacterial promoters
Logel, D. Y., Trofimova, E. & Jaschke, P. R., 18 Feb 2022, In: ACS Synthetic Biology. 11, 2, p. 689-699 11 p.Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus) -
Overlapping genes in natural and engineered genomes
Wright, B. W., Molloy, M. P. & Jaschke, P. R., Mar 2022, In: Nature Reviews Genetics. 23, 3, p. 154-168 15 p.Research output: Contribution to journal › Review article › peer-review
31 Citations (Scopus) -
Plaque Size Tool: an automated plaque analysis tool for simplifying and standardising bacteriophage plaque morphology measurements
Trofimova, E. & Jaschke, P. R., Sept 2021, In: Virology. 561, p. 1-5 5 p.Research output: Contribution to journal › Article › peer-review
4 Citations (Scopus)
Prizes
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Inter-Departmental Collaboration - [EX]plore Conference Organising Committee
Spence, David (Recipient), De Marco, Orsola (Recipient), Jiang, Iris (Recipient), Lin, Huan (Recipient), Smith, Connor (Recipient), Jaschke, Paul (Recipient), Hurst, Sally (Recipient), Fernandes Erickson, Marilia (Recipient), Rhee, Kristina (Recipient), Sharpless, Kelly (Recipient), Aboud, Jo (Recipient), Er, Jojo (Recipient) & Pallesen, Mel (Recipient), 8 Dec 2022
Prize: Other distinction
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Refactoring Phage: Lessons and Potential [Competitively Selected Presentation]
Paul Jaschke (Speaker)
14 Sept 2021Activity: Talk or presentation › Presentation
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Manipulating bacteriophage genomes and host-range on the way to next-generation antimicrobials [Invited Talk]
Paul Jaschke (Speaker)
Nov 2021Activity: Talk or presentation › Invited talk
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Engineering phage ΦX174: Lessons and Potential [Invited Talk]
Paul Jaschke (Speaker)
Oct 2021Activity: Talk or presentation › Invited talk
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Learning How to Engineer Genomes by Building Viruses [Invited Talk]
Paul Jaschke (Speaker)
Nov 2020Activity: Talk or presentation › Invited talk
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Remodelling the genetic code: defining new start codons in E. coli [Invited Talk]
Paul Jaschke (Speaker)
Oct 2019Activity: Talk or presentation › Invited talk