• 5474 Citations
  • 37 h-Index
1980 …2021

Research output per year

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Research Outputs

2011

Understanding TR binding to pMHC complexes: how does a TR scan many pMHC complexes yet preferentially bind to one

Khan, J. M. & Ranganathan, S., 2011, In : PLoS ONE. 6, 2, p. 1-12 12 p., e17194.

Research output: Contribution to journalArticle

Open Access
File
8 Citations (Scopus)
10 Downloads (Pure)

Untangling biological networks using bioinformatics

Kumar, G., Cootes, A. P. & Ranganathan, S., 2011, Algorithms in computational molecular biology: Techniques, approaches and applications. Elloumi, M. & Zomaya, A. Y. (eds.). Oxford: Wiley-Blackwell, Wiley, p. 867-892 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2012

Advances in translational bioinformatics and population genomics in the Asia-Pacific

Ranganathan, S., Tongsima, S., Chan, J., Tan, T. W. & Schönbach, C., 2012, In : BMC Genomics. 13, Suppl 7, p. 1-4 4 p., S1.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
2 Downloads (Pure)

An analysis of the transcriptome of Teladorsagia circumcincta: its biological and biotechnological implications

Menon, R., Gasser, R. B., Mitreva, M. & Ranganathan, S., 2012, In : BMC Genomics. 13, Suppl 7, p. 1-17 17 p., S10.

Research output: Contribution to journalArticle

13 Citations (Scopus)

An ethnobotanical study of medicinal plants used by the Yaegl Aboriginal community in northern New South Wales, Australia

Packer, J., Brouwer, N., Harrington, D., Gaikwad, J., Heron, R., Yaegl Community Elders, C. E., Ranganathan, S., Vemulpad, S. & Jamie, J., 6 Jan 2012, In : Journal of Ethnopharmacology. 139, 1, p. 244-255 12 p.

Research output: Contribution to journalArticle

Open Access
File
30 Citations (Scopus)
1498 Downloads (Pure)

Bioinformatics meets parasitology

Cantacessi, C., Campbell, B. E., Jex, A. R., Young, N. D., Hall, R. S., Ranganathan, S. & Gasser, R. B., May 2012, In : Parasite Immunology. 34, 5, p. 265-275 11 p.

Research output: Contribution to journalReview article

19 Citations (Scopus)

Helminth secretome database (HSD): a collection of helminth excretory/secretory proteins predicted from expressed sequence tags (ESTs)

Garg, G. & Ranganathan, S., 2012, In : BMC Genomics. 13, p. 1-11 11 p., S8.

Research output: Contribution to journalConference paper

Open Access
File
26 Citations (Scopus)
31 Downloads (Pure)

InCoB2012 Conference: from biological data to knowledge to technological breakthroughs

Schönbach, C., Tongsima, S., Chan, J., Brusic, V., Tan, T. W. & Ranganathan, S., 2012, In : BMC Bioinformatics. 13, Suppl 17, p. 1-6 6 p., S1.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)

In silico prediction of immunogenic T cell epitopes for HLA-DQ8

Khan, J. M., Kumar, G. & Ranganathan, S., 2012, In : Immunome Research. 8, 1, p. 1-9 9 p.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
11 Downloads (Pure)

Medicinal plants of New South Wales, Australia

Packer, J., Gaikwad, J., Harrington, D., Ranganathan, S., Jamie, J. & Vemulpad, S., 2012, Genetic Resources, chromosome engineering, and crop improvement: Volume 6 : medicinal plants. Singh, R. J. (ed.). Boca Raton ; London ; New York: CRC Press, Taylor & Francis Group, Vol. 6. p. 259-296 38 p. (Genetic Resources, chromosome engineering, and crop improvement series).

Research output: Chapter in Book/Report/Conference proceedingChapter

The transcriptome analysis of strongyloides stercoralis L3i larvae reveals targets for intervention in a neglected disease

Marcilla, A., Garg, G., Bernal, D., Ranganathan, S., Forment, J., Ortiz, J., Muñoz-Antolí, C., Dominguez, M. V., Pedrola, L., Martinez-Blanch, J., Sotillo, J., Trelis, M., Toledo, R. & Esteban, J. G., Feb 2012, In : PLoS Neglected Tropical Diseases. 6, 2, p. 1-9 9 p., e1513.

Research output: Contribution to journalArticle

Open Access
File
22 Citations (Scopus)
24 Downloads (Pure)

TranSeqAnnotator: large-scale analysis of transcriptomic data.

Menon, R., Garg, G., Gasser, R. B. & Ranganathan, S., 2012, In : BMC Bioinformatics. 13, Suppl 17, p. 1-7 7 p., S24.

Research output: Contribution to journalConference paper

3 Citations (Scopus)

Whole-genome sequence of Schistosoma haematobium

Young, N. D., Jex, A. R., Li, B., Liu, S., Yang, L., Xiong, Z., Li, Y., Cantacessi, C., Hall, R. S., Xu, X., Chen, F., Wu, X., Zerlotini, A., Oliveira, G., Hofmann, A., Zhang, G., Fang, X., Kang, Y., Campbell, B. E., Loukas, A. & 8 others, Ranganathan, S., Rollinson, D., Rinaldi, G., Brindley, P. J., Yang, H., Wang, J., Wang, J. & Gasser, R. B., Feb 2012, In : Nature Genetics. 44, 2, p. 221-225 5 p.

Research output: Contribution to journalArticle

276 Citations (Scopus)
2013

Adaptive immune system

Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 10-11 2 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

Analysis and comparison of γ-retroviral vector integration behaviour in human CD34+cells transduced under conditions employed in the French and English SCID-X1 clinical trials

Hallwirth, C. V., Garg, G., Malani, N. V., Peters, T., Hetherington, N., Hyman, J., Kramer, B., Ginn, S. L., Ruan, X., Ranganathan, S., Buckley, M., Bushman, F. D. & Alexander, I. E., Aug 2013, In : Journal of Gene Medicine. 15, 8-9, p. 315-316 2 p.

Research output: Contribution to journalMeeting abstract

APBioNet-transforming bioinformatics in the Asia-Pacific Region

Khan, A. M., Tan, T. W., Schönbach, C. & Ranganathan, S., 31 Oct 2013, In : PLoS Computational Biology. 9, 10, p. 1-3 3 p., e1003317.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
19 Downloads (Pure)

Computer-Aided Vaccine Design

Tong, J. C. & Ranganathan, S., 2013, Oxford: Elsevier. 135 p.

Research output: Book/ReportBook

1 Citation (Scopus)

Functional annotation of the human chromosome 7 "missing" proteins: A bioinformatics approach

Ranganathan, S., Khan, J. M., Garg, G. & Baker, M. S., 2013, In : Journal of Proteome Research. 12, 6, p. 2504-2510 7 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)

High-throughput functional annotation and data mining of fungal genomes to identify therapeutic targets

Garg, G. & Ranganathan, S., 2013, Laboratory protocols in fungal biology: current methods on fungal biology. Gupta, V. K., Tuohy, M. G., Ayyachamy, M., Turner, K. M. & O'Donovan, A. (eds.). New York: Springer, Springer Nature, p. 559-564 6 p. (Fungal biology).

Research output: Chapter in Book/Report/Conference proceedingChapter

Identification of ovarian cancer associated genes using an integrated approach in a Boolean framework

Kumar, G., Breen, E. J. & Ranganathan, S., 6 Feb 2013, In : BMC Systems Biology. 7, p. 1-14 14 p., 12.

Research output: Contribution to journalArticle

Open Access
File
8 Citations (Scopus)
5 Downloads (Pure)

InCoB2013 introduces Systems Biology as a major conference theme

Schönbach, C., Shen, B., Tan, T. W. & Ranganathan, S., 4 Nov 2013, In : BMC Systems Biology. 7, Supplement 3, p. 1-3 3 p.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
4 Downloads (Pure)

pMHC epitope

Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 1718-1719 2 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

Simple re-instantiation of small databases using cloud computing

Tan, T. W., Xie, C., De Silva, M., Lim, K. S., Patro, C. P. K., Lim, S. J., Govindarajan, K. R., Tong, J. C., Choo, K. H., Ranganathan, S. & Khan, A. M., 2013, In : BMC Genomics. 14, Suppl 5, p. 1-4 4 p., S13.

Research output: Contribution to journalConference paper

Open Access
File
2 Citations (Scopus)
4 Downloads (Pure)

Structural immunoinformatics

Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 2022-2023 2 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

T cell activation

Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). Springer, Springer Nature, p. 2115-2115 1 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

T cell epitopes

Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 2118-2119 2 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

T cell signalling

Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 2119-2119 1 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

The transcriptome of Echinostoma caproni adults: Further characterization of the secretome and identification of new potential drug targets

Garg, G., Bernal, D., Trelis, M., Forment, J., Ortiz, J., Valero, M. L., Pedrola, L., Martinez-Blanch, J., Esteban, J. G., Ranganathan, S., Toledo, R. & Marcilla, A., 26 Aug 2013, In : Journal of Proteomics. 89, p. 202-214 13 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

TR Germline Bias

Ranganathan, S., 2013, Encyclopedia of Systems Biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 2212-2212 1 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

TR recognition of MHC-peptide complexes

Khan, J. & Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 2212-2218 7 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

Unlocking the puzzling biology of the Black Périgord truffle Tuber melanosporum

Islam, M. T., Mohamedali, A., Garg, G., Khan, J. M., Gorse, A. D., Parsons, J., Marshall, P., Ranganathan, S. & Baker, M. S., 6 Dec 2013, In : Journal of Proteome Research. 12, 12, p. 5349-5356 8 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)
2014

Advanced in silico analysis of expressed sequence tag (EST) data for parasitic nematodes of major socio-economic importance

Ranganathan, S., 2014, Bioinformatics in systems biology and cryopreservation in agrobiodiversity. Noor, N. M. (ed.). Selangor: Penerbit Universiti Kebangsaan Malaysia, p. 35-57 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

A site for direct integrin αvβ6·uPAR interaction from structural modelling and docking

Sowmya, G., Khan, J. M., Anand, S., Ahn, S. B., Baker, M. S. & Ranganathan, S., Mar 2014, In : Journal of Structural Biology. 185, 3, p. 327-335 9 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Biological data integration using network models

Kumar, G. & Ranganathan, S., 2014, Biological knowledge discovery handbook: preprocessing, mining and postprocessing of biological data. Elloumi, M. & Zomaya, A. Y. (eds.). Hoboken, New Jersey: John Wiley & Sons, p. 155-173 19 p. (Wiley series on bioinformatics : Computational techniques and engineering.).

Research output: Chapter in Book/Report/Conference proceedingChapter

Characterization of the interaction between heterodimeric αvβ6 integrin and urokinase plasminogen activator receptor (uPAR) using functional proteomics

Ahn, S. B., Mohamedali, A., Anand, S., Cheruku, H. R., Birch, D., Sowmya, G., Cantor, D., Ranganathan, S., Inglis, D. W., Frank, R., Agrez, M., Nice, E. C. & Baker, M. S., 5 Dec 2014, In : Journal of Proteome Research. 13, 12, p. 5956-5964 9 p.

Research output: Contribution to journalArticle

15 Citations (Scopus)

Genome of the human hookworm Necator americanus

Tang, Y. T., Gao, X., Rosa, B. A., Abubucker, S., Hallsworth-Pepin, K., Martin, J., Tyagi, R., Heizer, E., Zhang, X., Bhonagiri-Palsikar, V., Minx, P., Warren, W. C., Wang, Q., Zhan, B., Hotez, P. J., Sternberg, P. W., Dougall, A., Gaze, S. T., Mulvenna, J., Sotillo, J. & 9 others, Ranganathan, S., Rabelo, E. M., Wilson, R. K., Felgner, P. L., Bethony, J., Hawdon, J. M., Gasser, R. B., Loukas, A. & Mitreva, M., 2014, In : Nature Genetics. 46, 3, p. 261-269 9 p.

Research output: Contribution to journalArticle

109 Citations (Scopus)

InCoB2014: mining biological data from genomics for transforming industry and health

Schönbach, C., Tan, T. W. & Ranganathan, S., 8 Dec 2014, In : BMC Genomics. 15, S9, p. 1-4 4 p., I1.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
7 Downloads (Pure)

InCoB2014: systems biology update from the Asia-Pacific

Ranganathan, S., Tan, T. W. & Schönbach, C., 8 Dec 2014, In : BMC Systems Biology. 8, Suppl. 4, p. 1-2 2 p., I1.

Research output: Contribution to journalArticle

Open Access
File

InCoB2014: bioinformatics to tackle the data to knowledge challenge

Ranganathan, S., Tan, T. W. & Schönbach, C., 8 Dec 2014, In : BMC Bioinformatics. 15, 16, p. 1-3 3 p., I1.

Research output: Contribution to journalArticle

Open Access
File
5 Downloads (Pure)

Protannotator: A semiautomated pipeline for chromosome-wise functional annotation of the "missing" human proteome

Islam, M. T., Garg, G., Hancock, W. S., Risk, B. A., Baker, M. S. & Ranganathan, S., 3 Jan 2014, In : Journal of Proteome Research. 13, 1, p. 76-83 8 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)

Protein-protein interactions and prediction: A comprehensive overview

Sowmya, G. & Ranganathan, S., 2014, In : Protein and peptide letters. 21, 8, p. 779-789 11 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)

Structure-based clustering of major histocompatibility complex (MHC) proteins for broad-based T-cell vaccine design

Tong, J. C., Tan, T. W. & Ranganathan, S., 2014, Immunoinformatics. De, R. K. & Tomar, N. (eds.). 2nd ed. New York: Humana Press, p. 503-511 9 p. (Methods in Molecular Biology; vol. 1184).

Research output: Chapter in Book/Report/Conference proceedingChapter

Transcriptome analysis reveals pathogenicity and evolutionary history of the pathogenic oomycete Pythium insidiosum

Krajaejun, T., Lerksuthirat, T., Garg, G., Lowhnoo, T., Yingyong, W., Khositnithikul, R., Tangphatsornruang, S., Suriyaphol, P., Ranganathan, S. & Sullivan, T. D., 2014, In : Fungal Biology. 118, 7, p. 640-653 14 p.

Research output: Contribution to journalArticle

17 Citations (Scopus)
2015

A novel multiplexed immunoassay identifies CEA, IL-8 and prolactin as prospective markers for Dukes' stages A-D colorectal cancers

Mahboob, S., Ahn, S. B., Cheruku, H. R., Cantor, D., Rennel, E., Fredriksson, S., Edfeldt, G., Breen, E. J., Khan, A., Mohamedali, A., Muktadir, M. G., Ranganathan, S., Tan, S. H., Nice, E. & Baker, M. S., 2015, In : Clinical Proteomics. 12, 1, p. 1-12 12 p., 10.

Research output: Contribution to journalArticle

Open Access
File
18 Citations (Scopus)
19 Downloads (Pure)

Chemogenomics approach to computer aided drug discovery

Khanna, V. & Ranganathan, S., 2015, Post-genomic approaches in drug and vaccine development. Sakharkar, K. R., Sakharkar, M. K. & Chandra, R. (eds.). Aalborg, Denmark: River Publishers, p. 93-114 22 p. (River Publishers Series in Research and Business Chronicles-Biotechnology and Medicine; vol. 5).

Research output: Chapter in Book/Report/Conference proceedingChapter

Coherence analysis discriminates between retroviral integration patterns in CD34+ cells transduced under differing clinical trial conditions

Hallwirth, C. V., Garg, G., Peters, T. J., Kramer, B. A., Malani, N. V., Hyman, J., Ruan, X., Ginn, S. L., Hetherington, N. A., Veeravalli, L., Shahab, A., Ranganathan, S., Wei, C. L., Liddle, C., Thrasher, A. J., Bushman, F. D., Buckley, M. J. & Alexander, I. E., 29 Apr 2015, In : Molecular Therapy - Methods and Clinical Development. 2, p. 1-10 10 p., 15015.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
8 Downloads (Pure)

Cracking the nodule worm code advances knowledge of parasite biology and biotechnology to tackle major diseases of livestock

Tyagi, R., Joachim, A., Ruttkowski, B., Rosa, B. A., Martin, J. C., Hallsworth-Pepin, K., Zhang, X., Ozersky, P., Wilson, R. K., Ranganathan, S., Sternberg, P. W., Gasser, R. B. & Mitreva, M., 1 Nov 2015, In : Biotechnology Advances. 33, 6 Pt 1, p. 980-991 12 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)

Discrete structural features among interface residue-level classes

Sowmya, G. & Ranganathan, S., 9 Dec 2015, In : BMC Bioinformatics. 16, p. 1-8 8 p., S8.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
5 Downloads (Pure)

GIW and InCoB, two premier bioinformatics conferences in Asia with a combined 40 years of history

Schonbach, C., Horton, P., Yiu, S-M., Tan, T. W. & Ranganathan, S., 9 Dec 2015, In : BMC Genomics. 16, Supplement 12, p. 1-4 4 p., I1.

Research output: Contribution to journalEditorial

Open Access
File
3 Downloads (Pure)

GIW and InCoB are advancing bioinformatics in the Asia-Pacific

Schönbach, C., Horton, P., Yiu, S. M., Tan, T. W. & Ranganathan, S., 18 Dec 2015, In : BMC Bioinformatics. 16, 18, p. 1-5 5 p., I1.

Research output: Contribution to journalArticle

Open Access
File