• 5506 Citations
  • 37 h-Index
1980 …2019

Research output per year

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Research Outputs

2007

A hitchhiker's guide to expressed sequence tag (EST) analysis

Nagaraj, S. H., Gasser, R. B. & Ranganathan, S., Jan 2007, In : Briefings in Bioinformatics. 8, 1, p. 6-21 16 p.

Research output: Contribution to journalEditorial

193 Citations (Scopus)

A practical guide to structure-based prediction of MHC-binding peptides

Ranganathan, S. & Tong, J. C., 2007, In : Methods in molecular biology (Clifton, N.J.). 409, p. 301-308 8 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

A transcriptomic analysis of the adult stage of the bovine lungworm, Dictyocaulus viviparus

Ranganathan, S., Nagaraj, S. H., Hu, M., Strube, C., Schnieder, T. & Gasser, R. B., 5 Sep 2007, In : BMC Genomics. 8, p. 1-13 13 p., 311.

Research output: Contribution to journalArticle

Open Access
File
14 Citations (Scopus)

A workflow for mutation extraction and structure annotation

Kanagasabai, R., Choo, K. H., Ranganathan, S. & Baker, C. J. O., Dec 2007, In : Journal of Bioinformatics and Computational Biology. 5, 6, p. 1319-1337 19 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)

CASVM: web server for SVM-based prediction of caspase substrates cleavage sites

Wee, L. J. K., Tan, T. W. & Ranganathan, S., Dec 2007, In : Bioinformatics. 23, 23, p. 3241-3243 3 p.

Research output: Contribution to journalArticle

55 Citations (Scopus)

ESTExplorer: An expressed sequence tag (EST) assembly and annotation platform

Nagaraj, S. H., Deshpande, N., Gasser, R. B. & Ranganathan, S., Jul 2007, In : Nucleic Acids Research. 35, SUPPL.2, p. 1-5 5 p.

Research output: Contribution to journalArticle

Open Access
File
48 Citations (Scopus)
4 Downloads (Pure)

Genomic characterization of Tv-ant-1, a Caenorhabditis elegans tag-61 homologue from the parasitic nematode Trichostrongylus vitrinus

Hu, M., Campbell, B. E., Pellegrino, M., Loukas, A., Beveridge, I., Ranganathan, S. & Gasser, R. B., 1 Aug 2007, In : Gene. 397, 1-2, p. 12-25 14 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

In silico characterization of immunogenic epitopes presented by HLA-Cw*0401

Tong, J. C., Zhang, Z. H., August, J. T., Brusic, V., Tan, T. W. & Ranganathan, S., 2007, In : Immunome Research. 3, 1, p. 1-8 8 p., 7.

Research output: Contribution to journalArticle

Open Access
File
12 Citations (Scopus)

In silico grouping of peptide/HLA class I complexes using structural interaction characteristics

Tong, J. C., Tan, T. W. & Ranganathan, S., 2007, In : Bioinformatics. 23, 2, p. 177-183 7 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)

Intelligent agent system for bio-medical literature mining

Islam, M. T., Bollina, D., Nayak, A. & Ranganathan, S., 2007, ICICT 2007: Proceedings of International Conference on Information and Communication Technology. Kabir, S. M. L. (ed.). Dhaka, Bangladesh: ICICT, p. 57-63 7 p. 4261365

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contribution

Open Access
File
13 Downloads (Pure)

Methods and protocols for prediction of immunogenic epitopes

Tong, J. C., Tan, T. W. & Ranganathan, S., Mar 2007, In : Briefings in Bioinformatics. 8, 2, p. 96-108 13 p.

Research output: Contribution to journalArticle

78 Citations (Scopus)

Oesophagostomum dentatum - Potential as a model for genomic studies of strongylid nematodes, with biotechnological prospects

Gasser, R. B., Cottee, P., Nisbet, A. J., Ruttkowski, B., Ranganathan, S. & Joachim, A., May 2007, In : Biotechnology Advances. 25, 3, p. 281-293 13 p.

Research output: Contribution to journalReview article

18 Citations (Scopus)
2006

ASGS: an alternative splicing graph web service

Bollina, D., Lee, B. T. K., Tan, T. W. & Ranganathan, S., Jul 2006, In : Nucleic Acids Research. 34, WEB. SERV. ISS., p. W444-W447 4 p.

Research output: Contribution to journalArticle

Open Access
File
12 Citations (Scopus)
4 Downloads (Pure)

Comparative genomic analysis of glycoylation pathways in yeast, plants and higher eukaryotes

Ranganathan, S., Wongsai, S. & Helena Nevalainen, K. M., 2006, Bioinformatics. Arora, D. K., Berka, R. M. & Singh, G. B. (eds.). Amsterdam: Elsevier, Vol. 6. p. 227-248 22 p. (Applied mycology and biotechnology; vol. 6).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)

Deduction of functional peptide motifs in scorpion toxins

Tan, P. T. J., Ranganathan, S. & Brusic, V., Jun 2006, In : Journal of Peptide Science. 12, 6, p. 420-427 8 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)

Establishing bioinformatics research in the Asia Pacific

Ranganathan, S., Tammi, M., Gribskov, M. & Tan, T. W., 18 Dec 2006, In : BMC Bioinformatics. 7, SUPPL.5, p. 1-4 4 p., S1.

Research output: Contribution to journalEditorial

Open Access
File
7 Citations (Scopus)
2 Downloads (Pure)

Modeling the bound conformation of Permphigus Vulgaris-associated peptides to MHC Class II DR and DQ Alleles

Tong, J. C., Bramson, J., Kanduc, D., Chow, S., Sinha, A. A. & Ranganathan, S., 2006, In : Immunome Research. 2, 1, 10 p.

Research output: Contribution to journalArticle

Open Access
File

MPID-T: database for sequence-structure-function information on T-cell receptor/peptide/MHC interactions

Joo, C. T., Kong, L., Tin, W. T. & Ranganathan, S., 2006, In : Applied Bioinformatics. 5, 2, p. 111-114 4 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)

OMIA (Online Mendelian Inheritance in Animals): an enhanced platform and integration into the Entrez search interface at NCBI.

Lenffer, J., Nicholas, F. W., Castle, K., Rao, A., Gregory, S., Poidinger, M., Mailman, M. D. & Ranganathan, S., 1 Jan 2006, In : Nucleic Acids Research. 34, Database issue, p. D599–D601 3 p.

Research output: Contribution to journalArticle

Open Access
File
46 Citations (Scopus)
41 Downloads (Pure)

Prediction of desmoglein-3 peptides reveals multiple shared T-cell epitopes in HLA DR4- and DR6- associated Pemphigus vulgaris

Tong, J. C., Tan, T. W., Sinha, A. A. & Ranganathan, S., 18 Dec 2006, In : BMC Bioinformatics. 7, SUPPL.5, p. 1-11 11 p., S7.

Research output: Contribution to journalArticle

Open Access
File
15 Citations (Scopus)

Prediction of HLA-DQ3.2β ligands: Evidence of multiple registers in class II binding peptides

Tong, J. C., Zhang, G. L., Tan, T. W., August, J. T., Brusic, V. & Ranganathan, S., 15 May 2006, In : Bioinformatics. 22, 10, p. 1232-1238 7 p.

Research output: Contribution to journalArticle

38 Citations (Scopus)

SCORPION2: a database for structure-function analysis of scorpion toxins

Tan, P. T. J., Veeramani, A., Srinivasan, K. N., Ranganathan, S. & Brusic, V., 1 Mar 2006, In : Toxicon. 47, 3, p. 356-363 8 p.

Research output: Contribution to journalArticle

41 Citations (Scopus)

SVM-based prediction of caspase substrate cleavage sites

Wee, L. J. K., Tan, T. W. & Ranganathan, S., 18 Dec 2006, In : BMC Bioinformatics. 7, SUPPL.5, p. 1-9 9 p., S14.

Research output: Contribution to journalArticle

Open Access
File
50 Citations (Scopus)
2005

Accurate prediction of scorpion toxin functional properties from primary structures

Tan, P. T. J., Srinivasan, K. N., Seah, S. H., Koh, J. L. Y., Tan, T. W., Ranganathan, S. & Brusic, V., Sep 2005, In : Journal of Molecular Graphics and Modelling. 24, 1, p. 17-24 8 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)

Bioinformatics Education-Perspectives and Challenges

Ranganathan, S., 2005, In : PLoS Computational Biology. 1, 6, p. 0447-0448 2 p., e52.

Research output: Contribution to journalComment/opinion

Open Access
File
35 Citations (Scopus)
3 Downloads (Pure)

Cloning and molecular characterization of the first aquatic hyaluronidase, SFHYA1, from the venom of stonefish (Synanceja horrida)

Ng, H. C., Ranganathan, S., Chua, K. L. & Khoo, H. E., 14 Feb 2005, In : Gene. 346, p. 71-81 11 p.

Research output: Contribution to journalArticle

23 Citations (Scopus)

MVC Architecture in Bioinformatics web applications and its Java implementation

Ranganathan, S., Bollina, D. & Lee, B. T. K., 2005, iiWAS 2005: the Seventh International Conference on Information Integration and Web-based Applications & Services : September 19-21, 2005, Kuala Lumpur, Malaysia. Kotsis, G., Tanier, D., Bressan, S., Ibrahim, I. K., Mokhtar & Salimah (eds.). Austrian Computer Society, p. 759-764 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contribution

SGS: splicing graph server

Bollina, D., Lee, B. T. K. & Ranganathan, S., 2005, Proceedings of the 2005 International Joint Conference of InCoB, AASBi and KSBi. Lee, D., Wong, L., Kim, D-W., Kim, S., Tan, T. W. & Lee, K-H. (eds.). Korea: InCoB, AASBi and KSBi, p. 47-50 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contribution

SPdb - A signal peptide database

Choo, K. H., Tan, T. W. & Ranganathan, S., 13 Oct 2005, In : BMC Bioinformatics. 6, p. 1-8 8 p., 249.

Research output: Contribution to journalArticle

70 Citations (Scopus)
2004

Aligning mRNA/EST data to geneomic sequences: a novel approach

Ranganathan, S., 2004, p. 24-24. 1 p.

Research output: Contribution to conferenceAbstract

Alternative Splicing: Bridging the Gap Between the Genome and the Transcriptome

Ranganathan, S., 2004, p. 51-51. 1 p.

Research output: Contribution to conferenceAbstract

Classification of BNIP2-Cdc42GAP homology domain family

Tan, T. W., Tan, K. H., Ranganathan, S. & Low, B. C., 2004, p. 14-14. 1 p.

Research output: Contribution to conferenceAbstract

DEDB: a database of Drosophila melanogaster exons in splicing graph form

Lee, B. T. K., Tan, T. W. & Ranganathan, S., 7 Dec 2004, In : BMC Bioinformatics. 5, p. 1-8 8 p., 189.

Research output: Contribution to journalArticle

26 Citations (Scopus)

Delineation of modular proteins: domain boundary prediction from sequence information.

Kong, L. & Ranganathan, S., Jun 2004, In : Briefings in Bioinformatics. 5, 2, p. 179-192 14 p.

Research output: Contribution to journalArticle

24 Citations (Scopus)

Drosophila melanogaster Exon Database

Lee, B. T. K., Ranganathan, S. & Tan, T. W., 2004, p. 14-14. 1 p.

Research output: Contribution to conferenceAbstract

Flexible Docking of Pemphigus Vulgaris Peptides to MHC Class II DR and DQ Alleles

Tong, J. C., Ranganathan, S., Bramson, J., Kanduc, D. & Sinha, A., 2004, p. 40-40. 1 p.

Research output: Contribution to conferenceAbstract

Mapping Alternate splice variants onto protein structures using biocomputing methods

Ranganathan, S., Gopalan, V. & Madhwacharyula, C. L., 2004, p. 3-3. 1 p.

Research output: Contribution to conferenceAbstract

Modeling the structure of bound peptide ligands to major histocompatibility complex

Tong, J. C., Tan, T. W. & Ranganathan, S., Sep 2004, In : Protein Science. 13, 9, p. 2523-2532 10 p.

Research output: Contribution to journalArticle

68 Citations (Scopus)

Representing Transcript Diversity in the Drosophila Melanogaster Genome using Splicing Graphs

Ranganathan, S., Lee, B. T. K. & Tan, T. W., 2004, p. 30-30. 1 p.

Research output: Contribution to conferenceAbstract

SDPMOD: an automated comparative modeling server for small disulfide-bonded proteins

Kong, L., Kwong Lee, B. T., Tong, J. C., Tan, T. W. & Ranganathan, S., 1 Jul 2004, In : Nucleic Acids Research. 32, Suppl 2, p. W356-W359 4 p.

Research output: Contribution to journalArticle

17 Citations (Scopus)

SigPep: A Database for Signal Peptides

Choo, K. H., Ranganathan, S. & Tan, T. W., 2004, p. 12-12. 1 p.

Research output: Contribution to conferenceAbstract

The integrin αLβ2 hybrid domain serves as a link for the propagation of activation signal from its stalk regions to the I-like domain

Tng, E., Tan, S. M., Ranganathan, S., Cheng, M. & Law, S. K. A., 24 Dec 2004, In : Journal of Biological Chemistry. 279, 52, p. 54334-54339 6 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)

Wormsplice: An alternative splicing database of C. Elegans using splicing graphs

Bollina, D. & Ranganathan, S., 2004, p. 7-7. 1 p.

Research output: Contribution to conferenceAbstract

Xpro: database of eukaryotic protein-encoding genes

Gopalan, V., Tan, T. W., Lee, B. T. K. & Ranganathan, S., 1 Jan 2004, In : Nucleic Acids Research. 32, Database issue, p. D59-D63 5 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)
2003

A common site within factor H SCR 7 responsible for binding heparin, C-reactive protein and streptococcal M protein

Giannakis, E., Jokiranta, T. S., Male, D. A., Ranganathan, S., Ormsby, R. J., Fischetti, V. A., Mold, C. & Gordon, D. L., 1 Apr 2003, In : European Journal of Immunology. 33, 4, p. 962-969 8 p.

Research output: Contribution to journalReview article

132 Citations (Scopus)

Antisense suppression of a cytokinin-binding protein from Petunia causes excessive branching and reduces adventitious shoot bud induction in vitro

Kumar, P. P., Kumar, B. D. & Ranganathan, S., 2003, Plant biotechnology 2002 and beyond: proceedings of the 10th IAPTC&B Congress June 23–28, 2002 Orlando, Florida, U.S.A.. Vasil, I. K. (ed.). Dordrech: Springer, Springer Nature, p. 285-287 3 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contribution

Database on neurotoxins from snakes

Joyce, S. P. Y., Steffanie, K. C. Y., Ramkishen, P. N., Armugam, A., Ranganathan, S. & Jeyaseelan, K., Dec 2003, In : Journal of Neurochemistry. 87, S1, p. 139-139 1 p.

Research output: Contribution to journalMeeting abstract

MGAlignIt: A web service for the alignment of mRNA/EST and genomic sequence

Lee, B. T. K., Tan, T. W. & Ranganathan, S., 2003, In : Nucleic Acids Research. 31, 13, p. 3533-3536 4 p.

Research output: Contribution to journalArticle

MGAlignlt: A web service for the alignment of mRNA/EST and genomic sequences

Lee, B. T. K., Tan, T. W. & Ranganathan, S., 1 Jul 2003, In : Nucleic Acids Research. 31, 13, p. 3533-3536 4 p.

Research output: Contribution to journalArticle

31 Citations (Scopus)

Molecular Modeling on the web

Ranganathan, S., 2003, Biocomputing: Computer Tools for Biologists. Stuart M. Brown (ed.). Westborough, MA: Biotechniques Press, Eaton Publishing, p. 411-417 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter