• 5398 Citations
  • 37 h-Index
1980 …2021

Research output per year

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Research Outputs

Bond-order-bond-energy correlations

Politzer, P. & Ranganathan, S., 14 Mar 1986, In : Chemical Physics Letters. 124, 6, p. 527-530 4 p.

Research output: Contribution to journalArticle

46 Citations (Scopus)

CASVM: web server for SVM-based prediction of caspase substrates cleavage sites

Wee, L. J. K., Tan, T. W. & Ranganathan, S., Dec 2007, In : Bioinformatics. 23, 23, p. 3241-3243 3 p.

Research output: Contribution to journalArticle

54 Citations (Scopus)

Challenges of the next decade for the Asia Pacific region: 2010 International Conference in Bioinformatics (InCoB 2010)

Ranganathan, S., Schönbach, C., Nakai, K. & Tan, T. W., 2 Oct 2010, In : BMC Genomics. 11, Supplement 4, p. 1-6 6 p., S1.

Research output: Contribution to journalEditorial

8 Citations (Scopus)

Characterization of the interaction between heterodimeric αvβ6 integrin and urokinase plasminogen activator receptor (uPAR) using functional proteomics

Ahn, S. B., Mohamedali, A., Anand, S., Cheruku, H. R., Birch, D., Sowmya, G., Cantor, D., Ranganathan, S., Inglis, D. W., Frank, R., Agrez, M., Nice, E. C. & Baker, M. S., 5 Dec 2014, In : Journal of Proteome Research. 13, 12, p. 5956-5964 9 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)

Chemogenomics approach to computer aided drug discovery

Khanna, V. & Ranganathan, S., 2015, Post-genomic approaches in drug and vaccine development. Sakharkar, K. R., Sakharkar, M. K. & Chandra, R. (eds.). Aalborg, Denmark: River Publishers, p. 93-114 22 p. (River Publishers Series in Research and Business Chronicles-Biotechnology and Medicine; vol. 5).

Research output: Chapter in Book/Report/Conference proceedingChapter

Chemoinformatics module for CMKb, a custromary medicinal database

Khanna, V., Gaikwad, J. A., Jamie, J. F. & Ranganathan, S., 2008.

Research output: Contribution to conferenceAbstract

Classification of BNIP2-Cdc42GAP homology domain family

Tan, T. W., Tan, K. H., Ranganathan, S. & Low, B. C., 2004, p. 14-14. 1 p.

Research output: Contribution to conferenceAbstract

Open Access
File
7 Citations (Scopus)
148 Downloads (Pure)

Cloning and molecular characterization of the first aquatic hyaluronidase, SFHYA1, from the venom of stonefish (Synanceja horrida)

Ng, H. C., Ranganathan, S., Chua, K. L. & Khoo, H. E., 14 Feb 2005, In : Gene. 346, p. 71-81 11 p.

Research output: Contribution to journalArticle

23 Citations (Scopus)

CMKb: a web-based prototype for integrating Australian Aboriginal customary medicinal plant knowledge

Gaikwad, J., Khanna, V., Vemulpad, S., Jamie, J., Kohen, J. & Ranganathan, S., 12 Dec 2008, In : BMC Bioinformatics. 9, SUPPL. 12, p. 1-8 8 p., S25.

Research output: Contribution to journalArticle

14 Citations (Scopus)

Coherence analysis discriminates between retroviral integration patterns in CD34+ cells transduced under differing clinical trial conditions

Hallwirth, C. V., Garg, G., Peters, T. J., Kramer, B. A., Malani, N. V., Hyman, J., Ruan, X., Ginn, S. L., Hetherington, N. A., Veeravalli, L., Shahab, A., Ranganathan, S., Wei, C. L., Liddle, C., Thrasher, A. J., Bushman, F. D., Buckley, M. J. & Alexander, I. E., 29 Apr 2015, In : Molecular Therapy - Methods and Clinical Development. 2, p. 1-10 10 p., 15015.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
8 Downloads (Pure)

Combating medicinal plant extinction and indigenous culture loss - an Australian Model

Gaikwad, J., Jamie, J. F., Vemulpad, S., Kohen, J. & Ranganathan, S., 2009.

Research output: Contribution to conferenceAbstract

Combining ethnobotany and informatics to discover knowledge from data

Gaikwad, J., Wilson, K., Kohen, J., Vemulpad, S., Jamie, J. & Ranganathan, S., 2011, Ethnomedicinal plants: revitalization of traditional knowledge of herbs. Rai, M., Acharya, D. & Ríos, J. L. (eds.). 1st ed. Enfield, NH: Science Publishers, p. 444-457 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Comparative genomic analysis of glycoylation pathways in yeast, plants and higher eukaryotes

Ranganathan, S., Wongsai, S. & Helena Nevalainen, K. M., 2006, Bioinformatics. Arora, D. K., Berka, R. M. & Singh, G. B. (eds.). Amsterdam: Elsevier, Vol. 6. p. 227-248 22 p. (Applied mycology and biotechnology; vol. 6).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)

Complement factor H: sequence analysis of 221 kb of human genomic DNA containing the entire fH, fHR-1 and fHR-3 genes

Male, D. A., Ormsby, R. J., Ranganathan, S., Giannakis, E. & Gordon, D. L., 1 Jan 2000, In : Molecular Immunology. 37, 1-2, p. 41-52 12 p.

Research output: Contribution to journalArticle

45 Citations (Scopus)

Compliant fields for formic acid and formamide

Murthy, A. S. N. & Ranganathan, S., 1983, In : Journal of the Chemical Society, Faraday Transactions 2: Molecular and Chemical Physics. 79, 11, p. 1699-1706 8 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Compliant fields for molecular interactions: Water dimer and formic acid dimer

Murthy, A. S. N. & Ranganathan, S., 1985, In : International Journal of Quantum Chemistry. 27, 5, p. 547-557 11 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Compliant fields for molecular interactions I: Lithium cation with carbonyl donors

Murthy, A. S. N. & Ranganathan, S., Dec 1982, In : Proceedings of the Indian Academy of Sciences - Chemical Sciences. 91, 6, p. 535-545 11 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Compliant fields for water, ammonia and methane

Murthy, A. S. N. & Ranganathan, S., 1983, In : Journal of Molecular Structure: THEOCHEM. 104, 1-2, p. 1-8 8 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Comprehensive splicing graph analysis of alternative splicing patterns in chicken, compared to human and mouse

Chacko, E. & Ranganathan, S., 7 Jul 2009, In : BMC Genomics. 10, SUPPL. 1, p. 1-11 11 p., S5.

Research output: Contribution to journalArticle

16 Citations (Scopus)

Computational analysis of the receptor binding specificity of novel influenza A/H7N9 viruses

Zhou, X., Zheng, J., Ivan, F. X., Yin, R., Ranganathan, S., Chow, V. T. K. & Kwoh, C-K., 9 May 2018, In : BMC Genomics. 19, Suppl 2, p. 1-10 10 p., 88.

Research output: Contribution to journalConference paper

Open Access
File
1 Citation (Scopus)
7 Downloads (Pure)

Computational evaluation and comparison of some nitramine properties

Politzer, P., Sukumar, N., Jayasuriya, K. & Ranganathan, S., 1 Jan 1988, In : Journal of the American Chemical Society. 110, 11, p. 3425-3430 6 p.

Research output: Contribution to journalArticle

43 Citations (Scopus)

Computer-Aided Vaccine Design

Tong, J. C. & Ranganathan, S., 2013, Oxford: Elsevier. 135 p.

Research output: Book/ReportBook

1 Citation (Scopus)

Correlations between the solvent hydrogen bond acceptor parameter β and the calculated molecular electrostatic potential

Murray, J. S., Ranganathan, S. & Politzer, P., 1991, In : Journal of Organic Chemistry. 56, 11, p. 3734-3737 4 p.

Research output: Contribution to journalArticle

118 Citations (Scopus)

Cracking the nodule worm code advances knowledge of parasite biology and biotechnology to tackle major diseases of livestock

Tyagi, R., Joachim, A., Ruttkowski, B., Rosa, B. A., Martin, J. C., Hallsworth-Pepin, K., Zhang, X., Ozersky, P., Wilson, R. K., Ranganathan, S., Sternberg, P. W., Gasser, R. B. & Mitreva, M., 1 Nov 2015, In : Biotechnology Advances. 33, 6 Pt 1, p. 980-991 12 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)

Critical technologies for bioinformatics

Brusic, V. & Ranganathan, S., Jul 2008, In : Briefings in Bioinformatics. 9, 4, p. 261-262 2 p.

Research output: Contribution to journalEditorial

2 Citations (Scopus)

Database on neurotoxins from snakes

Joyce, S. P. Y., Steffanie, K. C. Y., Ramkishen, P. N., Armugam, A., Ranganathan, S. & Jeyaseelan, K., Dec 2003, In : Journal of Neurochemistry. 87, S1, p. 139-139 1 p.

Research output: Contribution to journalMeeting abstract

DEDB: a database of Drosophila melanogaster exons in splicing graph form

Lee, B. T. K., Tan, T. W. & Ranganathan, S., 7 Dec 2004, In : BMC Bioinformatics. 5, p. 1-8 8 p., 189.

Research output: Contribution to journalArticle

26 Citations (Scopus)

Deduction of functional peptide motifs in scorpion toxins

Tan, P. T. J., Ranganathan, S. & Brusic, V., Jun 2006, In : Journal of Peptide Science. 12, 6, p. 420-427 8 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)

Deep insights into Dictyocaulus viviparus transcriptomes provides unique prospects for new drug targets and disease intervention

Cantacessi, C., Gasser, R. B., Strube, C., Schnieder, T., Jex, A. R., Hall, R. S., Campbell, B. E., Young, N. D., Ranganathan, S., Sternberg, P. W. & Mitreva, M., May 2011, In : Biotechnology Advances. 29, 3, p. 261-271 11 p.

Research output: Contribution to journalReview article

24 Citations (Scopus)

Delineation of modular proteins: domain boundary prediction from sequence information.

Kong, L. & Ranganathan, S., Jun 2004, In : Briefings in Bioinformatics. 5, 2, p. 179-192 14 p.

Research output: Contribution to journalArticle

23 Citations (Scopus)

De novo peptide sequencing: deep mining of high-resolution mass spectrometry data

Islam, M. T., Mohamedali, A., Fernandes, C. S., Baker, M. S. & Ranganathan, S., 2017, Proteome bioinformatics: Methods in molecular biology. Keerthikumar, S. & Mathivanan, S. (eds.). 1st ed. New York: Humana Press Inc., p. 119-134 16 p. (Methods in Molecular Biology; vol. 1549).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)

Discrete structural features among interface residue-level classes

Sowmya, G. & Ranganathan, S., 9 Dec 2015, In : BMC Bioinformatics. 16, p. 1-8 8 p., S8.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
5 Downloads (Pure)

Divergent response of homologous ATP sites to stereospecific ligand fluorination for selectivity enhancement

Patel, A. R., Hardianto, A., Ranganathan, S. & Liu, F., 21 Feb 2017, In : Organic and Biomolecular Chemistry. 15, 7, p. 1570-1574 5 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Diverse dynamics features of novel protein kinase C (PKC) isozymes determine the selectivity of a fluorinated balanol analogue for PKCϵ

Hardianto, A., Khanna, V., Liu, F. & Ranganathan, S., 4 Feb 2019, In : BMC Bioinformatics. 19, Suppl. 13, 11 p., 342.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
6 Downloads (Pure)

Drosophila melanogaster Exon Database

Lee, B. T. K., Ranganathan, S. & Tan, T. W., 2004, p. 14-14. 1 p.

Research output: Contribution to conferenceAbstract

17 Citations (Scopus)

Editorial overview: theory and simulation: demystifying GPCRs – structure, function and drug design

Ranganathan, S. & Blundell, T. L., Apr 2019, In : Current Opinion in Structural Biology. 55, p. vi-viii 3 p.

Research output: Contribution to journalEditorial

Emerging strengths in Asia Pacific bioinformatics

Ranganathan, S., Hsu, W. L., Yang, U. C. & Tan, T. W., 12 Dec 2008, In : BMC Bioinformatics. 9, SUPPL. 12, p. 1-5 5 p., S1.

Research output: Contribution to journalArticle

Open Access
File
5 Citations (Scopus)
1 Downloads (Pure)

Encyclopedia of bioinformatics and computational biology

Ranganathan, S. (ed.), Gribskov, M. (ed.), Nakai, K. (ed.) & Schönbach, C. (ed.), 2019, Amsterdam; Oxford; Cambridge: Elsevier. 3346 p.

Research output: Book/ReportEdited Book/Anthology

Establishing bioinformatics research in the Asia Pacific

Ranganathan, S., Tammi, M., Gribskov, M. & Tan, T. W., 18 Dec 2006, In : BMC Bioinformatics. 7, SUPPL.5, p. 1-4 4 p., S1.

Research output: Contribution to journalEditorial

Open Access
File
7 Citations (Scopus)
2 Downloads (Pure)

ESTExplorer: An expressed sequence tag (EST) assembly and annotation platform

Nagaraj, S. H., Deshpande, N., Gasser, R. B. & Ranganathan, S., Jul 2007, In : Nucleic acids research. 35, SUPPL.2, p. 1-5 5 p.

Research output: Contribution to journalArticle

Open Access
File
48 Citations (Scopus)
4 Downloads (Pure)

Exploration of charge states of balanol analogues acting as ATP-competitive inhibitors in kinases

Hardianto, A., Yusuf, M., Liu, F. & Ranganathan, S., 28 Dec 2017, In : BMC Bioinformatics. 18, Suppl 16, p. 19-30 12 p., 572.

Research output: Contribution to journalConference paper

Open Access
File
6 Citations (Scopus)
9 Downloads (Pure)

Extending Asia Pacific bioinformatics into new realms in the "-omics" era

Ranganathan, S., Eisenhaber, F., Tong, J. C. & Tan, T. W., 3 Dec 2009, In : BMC Genomics. 10, SUPPL. 3, p. 1-5 5 p., S1.

Research output: Contribution to journalEditorial

Open Access
File
5 Citations (Scopus)
3 Downloads (Pure)

Extracting biomarker information applying natural language processing and machine learning

Islam, M. T., Shaikh, M., Nayak, A. & Ranganathan, S., 2010, 2010 4th International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2010. Piscataway, NJ: Institute of Electrical and Electronics Engineers (IEEE), p. 1-4 4 p. 5514717

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contribution

Open Access
File
1 Citation (Scopus)
27 Downloads (Pure)

First transcriptomic analysis of the economically important parasitic nematode, Trichostrongylus colubriformis, using a next-generation sequencing approach

Cantacessi, C., Mitreva, M., Campbell, B. E., Hall, R. S., Young, N. D., Jex, A. R., Ranganathan, S. & Gasser, R. B., Dec 2010, In : Infection, Genetics and Evolution. 10, 8, p. 1199-1207 9 p.

Research output: Contribution to journalArticle

42 Citations (Scopus)

Flanking signal and mature peptide residues influence signal peptide cleavage

Choo, K. H. & Ranganathan, S., 12 Dec 2008, In : BMC Bioinformatics. 9, SUPPL. 12, p. 1-11 11 p., S15.

Research output: Contribution to journalArticle

Open Access
File
47 Citations (Scopus)
1 Downloads (Pure)

Flexible Docking of Pemphigus Vulgaris Peptides to MHC Class II DR and DQ Alleles

Tong, J. C., Ranganathan, S., Bramson, J., Kanduc, D. & Sinha, A., 2004, p. 40-40. 1 p.

Research output: Contribution to conferenceAbstract

Functional and structural implications of the complement factor H Y402H polymorphism associated with Age-Related macular degeneration

Ormsby, R. J., Ranganathan, S., Tong, J. C., Griggs, K. M., Dimasi, D. P., Hewitt, A. W., Burdon, K. P., Craig, J. E., Hoh, J. & Gordon, D. L., Apr 2008, In : Investigative Ophthalmology and Visual Science. 49, 5, p. 1763-1770 8 p.

Research output: Contribution to journalArticle

66 Citations (Scopus)

Functional and structural studies of wild SOX9 and mutations causing campomelic dysplasia

McDowall, S., Argentaro, A., Ranganathan, S., Weller, P., Mertin, S., Mansour, S., Tolmie, J. & Harley, V., 20 Aug 1999, In : Journal of Biological Chemistry. 274, 34, p. 24023-24030 8 p.

Research output: Contribution to journalArticle

92 Citations (Scopus)