• 5497 Citations
  • 37 h-Index
1980 …2019

Research output per year

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Research Outputs

Functional annotation of the human chromosome 7 "missing" proteins: A bioinformatics approach

Ranganathan, S., Khan, J. M., Garg, G. & Baker, M. S., 2013, In : Journal of Proteome Research. 12, 6, p. 2504-2510 7 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)

Gender-enriched transcripts in Haemonchus contortus - predicted functions and genetic interactions based on comparative analyses with Caenorhabditis elegans

Campbell, B. E., Nagaraj, S. H., Hu, M., Zhong, W., Sternberg, P. W., Ong, E. K., Loukas, A., Ranganathan, S., Beveridge, I., McInnes, R. L., Hutchinson, G. W. & Gasser, R. B., Jan 2008, In : International Journal for Parasitology. 38, 1, p. 65-83 19 p.

Research output: Contribution to journalArticle

33 Citations (Scopus)

Generation and analysis of a highly complex γ-retroviral vector integration site dataset from human CD34+ cells using illumina next-generation sequencing

Hallwirth, C. V., Hyman, J., Garg, G., Ruan, X., Veeravalli, L., Kramer, B., Shahab, A., Ong, C. T., Liddle, C., Ranganathan, S., Russell, D. W., Wei, C-L. & Alexander, I. E., 2011, In : Journal of Gene Medicine. 13, 7-8, p. 430-431 2 p.

Research output: Contribution to journalMeeting abstract

Genome databases and browsers

Southwood, D. & Ranganathan, S., 2019, Encyclopedia of bioinformatics and computational biology: ABC of Bioinformatics. Ranganathan, S., Gribskov, M., Nakai, K. & Schönbach, C. (eds.). Amsterdam: Elsevier, Vol. 2. p. 251-256 6 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

Genome of the human hookworm Necator americanus

Tang, Y. T., Gao, X., Rosa, B. A., Abubucker, S., Hallsworth-Pepin, K., Martin, J., Tyagi, R., Heizer, E., Zhang, X., Bhonagiri-Palsikar, V., Minx, P., Warren, W. C., Wang, Q., Zhan, B., Hotez, P. J., Sternberg, P. W., Dougall, A., Gaze, S. T., Mulvenna, J., Sotillo, J. & 9 others, Ranganathan, S., Rabelo, E. M., Wilson, R. K., Felgner, P. L., Bethony, J., Hawdon, J. M., Gasser, R. B., Loukas, A. & Mitreva, M., 2014, In : Nature Genetics. 46, 3, p. 261-269 9 p.

Research output: Contribution to journalArticle

109 Citations (Scopus)

Genome-wide analysis of alternative splicing in cow: implications in bovine as a model for human diseases

Chacko, E. & Ranganathan, S., 3 Dec 2009, In : BMC Genomics. 10, Supplement 3, p. 1-13 13 p., S11.

Research output: Contribution to journalArticle

Open Access
File
15 Citations (Scopus)

Genomic characterization of Tv-ant-1, a Caenorhabditis elegans tag-61 homologue from the parasitic nematode Trichostrongylus vitrinus

Hu, M., Campbell, B. E., Pellegrino, M., Loukas, A., Beveridge, I., Ranganathan, S. & Gasser, R. B., 1 Aug 2007, In : Gene. 397, 1-2, p. 12-25 14 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

GIW and InCoB, two premier bioinformatics conferences in Asia with a combined 40 years of history

Schonbach, C., Horton, P., Yiu, S-M., Tan, T. W. & Ranganathan, S., 9 Dec 2015, In : BMC Genomics. 16, Supplement 12, p. 1-4 4 p., I1.

Research output: Contribution to journalEditorial

Open Access
File
3 Downloads (Pure)

GIW and InCoB are advancing bioinformatics in the Asia-Pacific

Schönbach, C., Horton, P., Yiu, S. M., Tan, T. W. & Ranganathan, S., 18 Dec 2015, In : BMC Bioinformatics. 16, 18, p. 1-5 5 p., I1.

Research output: Contribution to journalArticle

Open Access
File

Graphs in bioinformatics

Chacko, E. & Ranganathan, S., 2011, Algorithms in computational molecular biology: Techniques, approaches and applications. Elloumi, M. & Zomaya, A. Y. (eds.). Oxford: John Wiley & Sons, p. 192-219 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

Helminth secretome database (HSD): a collection of helminth excretory/secretory proteins predicted from expressed sequence tags (ESTs)

Garg, G. & Ranganathan, S., 2012, In : BMC Genomics. 13, p. 1-11 11 p., S8.

Research output: Contribution to journalConference paper

Open Access
File
26 Citations (Scopus)
31 Downloads (Pure)

High-throughput functional annotation and data mining of fungal genomes to identify therapeutic targets

Garg, G. & Ranganathan, S., 2013, Laboratory protocols in fungal biology: current methods on fungal biology. Gupta, V. K., Tuohy, M. G., Ayyachamy, M., Turner, K. M. & O'Donovan, A. (eds.). New York: Springer, Springer Nature, p. 559-564 6 p. (Fungal biology).

Research output: Chapter in Book/Report/Conference proceedingChapter

Host-pathogen interactions

Southwood, D. & Ranganathan, S., 2019, Encyclopedia of bioinformatics and computational biology: ABC of Bioinformatics. Ranganathan, S., Gribskov, M., Nakai, K. & Schönbach, C. (eds.). Amsterdam: Elsevier, Vol. 3. p. 103-112 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Human Prestin: a candidate PE1 protein lacking stringent mass spectrometric evidence?

Mohamedali, A., Ahn, S. B., Sreenivasan, V. K. A., Ranganathan, S. & Baker, M. S., 1 Dec 2017, In : Journal of Proteome Research. 16, 12, p. 4531-4535 5 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)
58 Citations (Scopus)

Identification of ovarian cancer associated genes using an integrated approach in a Boolean framework

Kumar, G., Breen, E. J. & Ranganathan, S., 6 Feb 2013, In : BMC Systems Biology. 7, p. 1-14 14 p., 12.

Research output: Contribution to journalArticle

Open Access
File
8 Citations (Scopus)
5 Downloads (Pure)

Identification of proteins from proteomic analysis

Noor, Z., Mohamedali, A. & Ranganathan, S., 2019, Encyclopedia of bioinformatics and computational biology: ABC of Bioinformatics. Cannataro, M., Gaeta, B. & Asif Khan, M. (eds.). Amsterdam; Oxford; Cambridge: Elsevier, Vol. 3. p. 855-870 16 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

Immunoinformatics

Schönbach, C. (ed.), Ranganathan, S. (ed.) & Brusic, V. (ed.), 2008, New York: Springer, Springer Nature. 200 p.

Research output: Book/ReportEdited Book/Anthology

2 Citations (Scopus)

Improved insights into the transcriptomes of the human hookworm Necator americanus - Fundamental and biotechnological implications

Rabelo, E. M., Hall, R. S., Loukas, A., Cooper, L., Hu, M., Ranganathan, S. & Gasser, R. B., Mar 2009, In : Biotechnology Advances. 27, 2, p. 122-132 11 p.

Research output: Contribution to journalReview article

15 Citations (Scopus)

InCoB2010 - 9thInternational Conference on Bioinformatics at Tokyo, Japan, September 26-28, 2010

Schönbach, C., Nakai, K., Tan, T. W. & Ranganathan, S., 15 Oct 2010, In : BMC Bioinformatics. 11, SUPPL. 7, p. 1-4 4 p., S1.

Research output: Contribution to journalEditorial

1 Citation (Scopus)

InCoB2012 Conference: from biological data to knowledge to technological breakthroughs

Schönbach, C., Tongsima, S., Chan, J., Brusic, V., Tan, T. W. & Ranganathan, S., 2012, In : BMC Bioinformatics. 13, Suppl 17, p. 1-6 6 p., S1.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)

InCoB2013 introduces Systems Biology as a major conference theme

Schönbach, C., Shen, B., Tan, T. W. & Ranganathan, S., 4 Nov 2013, In : BMC Systems Biology. 7, Supplement 3, p. 1-3 3 p.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
4 Downloads (Pure)

InCoB2014: bioinformatics to tackle the data to knowledge challenge

Ranganathan, S., Tan, T. W. & Schönbach, C., 8 Dec 2014, In : BMC Bioinformatics. 15, 16, p. 1-3 3 p., I1.

Research output: Contribution to journalArticle

Open Access
File
5 Downloads (Pure)

InCoB2014: mining biological data from genomics for transforming industry and health

Schönbach, C., Tan, T. W. & Ranganathan, S., 8 Dec 2014, In : BMC Genomics. 15, S9, p. 1-4 4 p., I1.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
7 Downloads (Pure)

InCoB2014: systems biology update from the Asia-Pacific

Ranganathan, S., Tan, T. W. & Schönbach, C., 8 Dec 2014, In : BMC Systems Biology. 8, Suppl. 4, p. 1-2 2 p., I1.

Research output: Contribution to journalArticle

Open Access
File

InCoB celebrates its tenth anniversary as first joint conference with ISCB-Asia

Schönbach, C., Tan, T. W., Kelso, J., Rost, B., Nathan, S. & Ranganathan, S., 30 Nov 2011, In : BMC Genomics. 12, 3, p. 1-4 4 p., S1.

Research output: Contribution to journalArticle

Open Access
File
3 Citations (Scopus)

In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): Comparison of the automated ESTExplorer workflow platform with conventional database searches

Nagaraj, S. H., Gasser, R. B., Nisbet, A. J. & Ranganathan, S., 13 Feb 2008, In : BMC Bioinformatics. 9, SUPPL. 1, p. 1-17 17 p., S10.

Research output: Contribution to journalArticle

16 Citations (Scopus)

In silico approach to screen compounds active against parasitic nematodes of major socio-economic importance

Khanna, V. & Ranganathan, S., 30 Nov 2011, In : BMC Bioinformatics. 12, Suppl 13, p. 1-12 12 p., S25.

Research output: Contribution to journalConference paper

8 Citations (Scopus)

In silico characterization of immunogenic epitopes presented by HLA-Cw*0401

Tong, J. C., Zhang, Z. H., August, J. T., Brusic, V., Tan, T. W. & Ranganathan, S., 2007, In : Immunome Research. 3, 1, p. 1-8 8 p., 7.

Research output: Contribution to journalArticle

Open Access
File
12 Citations (Scopus)

In silico grouping of peptide/HLA class I complexes using structural interaction characteristics

Tong, J. C., Tan, T. W. & Ranganathan, S., 2007, In : Bioinformatics. 23, 2, p. 177-183 7 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)

In silico methods for the analysis of metabolites and drug molecules

Khanna, V. & Ranganathan, S., 2011, Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications. Elloumi, M. & Zomaya, A. Y. (eds.). Hoboken, NJ: John Wiley & Sons, p. 361-381 21 p. (Bioinformatics: Computational Techniques and Engineering).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

In silico prediction of immunogenic T cell epitopes for HLA-DQ8

Khan, J. M., Kumar, G. & Ranganathan, S., 2012, In : Immunome Research. 8, 1, p. 1-9 9 p.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
12 Downloads (Pure)

In silico secretome analysis approach for next generation sequencing transcriptomic data

Garg, G. & Ranganathan, S., 2011, 10th International Conference on Bioinformatics. First ISCB Asia Joint Conference 2011 (InCoB/ISCB-Asia 2011): Computational Biology. Schoenbach, C., Nathan, S., Tan, T. W. & Ranganathan, S. (eds.). Piscataway, N.J.: Institute of Electrical and Electronics Engineers (IEEE), Vol. 12, Suppl. 3. p. 1-10 10 p. S14

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contribution

25 Citations (Scopus)

Integration of protein Interaction and Metabolic Data for Subcellular Localization Prediction

Cootes, A., Nevalainen, H. K. M. & Ranganathan, S., 2008, p. P98-P98. 1 p.

Research output: Contribution to conferenceAbstract

Intelligent agent system for bio-medical literature mining

Islam, M. T., Bollina, D., Nayak, A. & Ranganathan, S., 2007, ICICT 2007: Proceedings of International Conference on Information and Communication Technology. Kabir, S. M. L. (ed.). Dhaka, Bangladesh: ICICT, p. 57-63 7 p. 4261365

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contribution

Open Access
File
13 Downloads (Pure)

Introduction to selected papers from GIW/InCoB 2015

Horton, P., Schönbach, C., Ranganathan, S. & Yiu, S. M., 1 Oct 2015, In : Journal of Bioinformatics and Computational Biology. 13, 5, 2 p., 1502003.

Research output: Contribution to journalEditorial

4 Citations (Scopus)

Linking structural features of protein complexes and biological function

Sowmya, G., Breen, E. J. & Ranganathan, S., Sep 2015, In : Protein Science. 24, 9, p. 1486-1494 9 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)

Looking for missing proteins

Jabeen, A., Mohamedali, A. & Ranganathan, S., 2019, Reference module in life sciences. Roitberg, B. D., Cotter, P. D., Dixon, B., Giordano, A., Mayor, R., O'Neill, S., Pentimalli, F., Ranganathan, S., Sharfstein, S. T., Vitale, I., Wilson, K., Zaragoza, O. & Zhou, H-X. (eds.). Elsevier, p. 1-15 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Major colour patterns of reef-building corals are due to a family of GFP-like proteins

Dove, S. G., Hoegh-Guldberg, O. & Ranganathan, S., 2001, In : Coral Reefs. 19, 3, p. 197-204 8 p.

Research output: Contribution to journalArticle

191 Citations (Scopus)

Mapping Alternate splice variants onto protein structures using biocomputing methods

Ranganathan, S., Gopalan, V. & Madhwacharyula, C. L., 2004, p. 3-3. 1 p.

Research output: Contribution to conferenceAbstract

Massively parallel sequencing and analysis of the Necator americanus transcriptome

Cantacessi, C., Mitreva, M., Jex, A. R., Young, N. D., Campbell, B. E., Hall, R. S., Doyle, M. A., Ralph, S. A., Rabelo, E. M., Ranganathan, S., Sternberg, P. W., Loukas, A. & Gasser, R. B., May 2010, In : PLoS Neglected Tropical Diseases. 4, 5, p. 1-11 11 p., e684.

Research output: Contribution to journalArticle

Open Access
File
60 Citations (Scopus)
20 Citations (Scopus)

Medicinal plants of New South Wales, Australia

Packer, J., Gaikwad, J., Harrington, D., Ranganathan, S., Jamie, J. & Vemulpad, S., 2012, Genetic Resources, chromosome engineering, and crop improvement: Volume 6 : medicinal plants. Singh, R. J. (ed.). Boca Raton ; London ; New York: CRC Press, Taylor & Francis Group, Vol. 6. p. 259-296 38 p. (Genetic Resources, chromosome engineering, and crop improvement series).

Research output: Chapter in Book/Report/Conference proceedingChapter

Meeting report from the second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop

Kettner, C., Field, D., Sansone, S. A., Taylor, C., Aerts, J., Binns, N., Blake, A., Britten, C. M., Marco, A., Fostel, J., Gaudet, P., González-Beltrán, A., Hardy, N., Hellemans, J., Hermjakob, H., Juty, N., Leebens-Mack, J., Maguire, E., Neumann, S., Orchard, S. & 9 others, Parkinson, H., Piel, W., Ranganathan, S., Rocca-Serra, P., Santarsiero, A., Shotton, D., Sterk, P., Untergasser, A. & Whetzel, P. L., 31 Dec 2010, In : Standards in Genomic Sciences. 3, 3, p. 259-266 8 p.

Research output: Contribution to journalOther journal contribution

Open Access
File
3 Downloads (Pure)

Methods and protocols for prediction of immunogenic epitopes

Tong, J. C., Tan, T. W. & Ranganathan, S., Mar 2007, In : Briefings in Bioinformatics. 8, 2, p. 96-108 13 p.

Research output: Contribution to journalArticle

78 Citations (Scopus)

MGAlignIt: A web service for the alignment of mRNA/EST and genomic sequence

Lee, B. T. K., Tan, T. W. & Ranganathan, S., 2003, In : Nucleic Acids Research. 31, 13, p. 3533-3536 4 p.

Research output: Contribution to journalArticle

MGAlignlt: A web service for the alignment of mRNA/EST and genomic sequences

Lee, B. T. K., Tan, T. W. & Ranganathan, S., 1 Jul 2003, In : Nucleic Acids Research. 31, 13, p. 3533-3536 4 p.

Research output: Contribution to journalArticle

31 Citations (Scopus)

Modeling Escherichia coli signal peptidase complex with bound substrate: determinants in the mature peptide influencing signal peptide cleavage

Choo, K. H., Tong, J. C. & Ranganathan, S., 13 Feb 2008, In : BMC Bioinformatics. 9, SUPPL. 1, p. 1-7 7 p., S15.

Research output: Contribution to journalArticle

Open Access
File
11 Citations (Scopus)
2 Downloads (Pure)