• 5414 Citations
  • 37 h-Index
1980 …2021

Research output per year

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Research Outputs

Substituent effects on carbonyl bond orders

Ranganathan, S., 6 Sep 1991, In : Journal of Molecular Structure: THEOCHEM. 233, C, p. 83-87 5 p.

Research output: Contribution to journalArticle

SVM-based prediction of caspase substrate cleavage sites

Wee, L. J. K., Tan, T. W. & Ranganathan, S., 18 Dec 2006, In : BMC Bioinformatics. 7, SUPPL.5, p. 1-9 9 p., S14.

Research output: Contribution to journalArticle

Open Access
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49 Citations (Scopus)

Systems proteomics view of the endogenous human claudin protein family

Liu, F., Koval, M., Ranganathan, S., Fanayan, S., Hancock, W. S., Lundberg, E. K., Beavis, R. C., Lane, L., Duek, P., McQuade, L., Kelleher, N. L. & Baker, M. S., 5 Feb 2016, In : Journal of Proteome Research. 15, 2, p. 339-359 21 p.

Research output: Contribution to journalReview article

10 Citations (Scopus)

Tandem duplication, circular permutation, molecular adaptation: how Solanaceae resist pests via inhibitors

Kong, L. & Ranganathan, S., 13 Feb 2008, In : BMC Bioinformatics. 9, SUPPL. 1, p. 1-15 15 p., S22.

Research output: Contribution to journalArticle

Open Access
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23 Citations (Scopus)
3 Downloads (Pure)

T cell activation

Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). Springer, Springer Nature, p. 2115-2115 1 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

T cell epitopes

Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 2118-2119 2 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

T cell signalling

Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 2119-2119 1 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

The Asia-Pacific regional perspective on bioinformatics

Miyano, S. & Ranganathan, S., 2001, In : IEEE Intelligent Systems. 16, 6, p. 19-20; 61 3 p.

Research output: Contribution to journalEditorial

6 Citations (Scopus)

The force field of carbon suboxide

Murthy, A. S. N. & Ranganathan, S., 1982, In : Journal of Molecular Structure. 90, C, p. 219-226 8 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

The gene for a novel member of the whey acidic protein family encodes three four-disulfide core domains and is asynchronously expressed during lactation

Simpson, K. J., Ranganathani, S., Fisher, J. A., Janssens, P. A., Shaw, D. C. & Nicholas, K. R., 28 Jul 2000, In : Journal of Biological Chemistry. 275, 30, p. 23074-23081 8 p.

Research output: Contribution to journalArticle

60 Citations (Scopus)

The genome sequence of taurine cattle: A window to ruminant biology and evolution

Elsik, C. G., Tellam, R. L., Worley, K. C., Gibbs, R. A., Muzny, D. M., Weinstock, G. M., Adelson, D. L., Eichler, E. E., Elnitski, L., Guigó, R., Hamernik, D. L., Kappes, S. M., Lewin, H. A., Lynn, D. J., Nicholas, F. W., Reymond, A., Rijnkels, M., Skow, L. C., Zdobnov, E. M., Schook, L. & 288 others, Womack, J., Alioto, T., Antonarakis, S. E., Astashyn, A., Chappie, C. E., Chen, H. C., Chrast, J., Câmara, F., Ermolaeva, O., Henrichsen, C. N., Hlavina, W., Kapustin, Y., Kiryutin, B., Kitts, P., Kokocinski, F., Landrum, M., Maglott, D., Pruitt, K., Sapojnikov, V., Searle, S. M., Solovyev, V., Souvorov, A., Ucla, C., Wyss, C., Anzola, J. M., Gerlach, D., Elhaik, E., Graur, D., Reese, J. T., Edgar, R. C., McEwan, J. C., Payne, G. M., Raison, J. M., Junier, T., Kriventseva, E. V., Eyras, E., Plass, M., Donthu, R., Larkin, D. M., Reecy, J., Yang, M. Q., Chen, L., Cheng, Z., Chitko-McKown, C. G., Liu, G. E., Matukumalli, L. K., Song, J., Zhu, B., Bradley, D. G., Brinkman, F. S. L., Lau, L. P. L., Whiteside, M. D., Walker, A., Wheeler, T. T., Casey, T., German, J. B., Lemay, D. G., Maqbool, N. J., Molenaar, A. J., Seo, S., Stothard, P., Baldwin, C. L., Baxter, R., Brinkmeyer-Larigford, C. L., Brown, W. C., Childers, C. P., Connelley, T., Ellis, S. A., Fritz, K., Glass, E. J., Herzig, C. T. A., Livanainen, A., Lahmers, K. K., Bennett, A. K., Dickens, C. M., Gilbert, J. G. R., Hagen, D. E., Salih, H., Aerts, J., Caetano, A. R., Dalrymple, B., Garcia, J. F., Gill, C. A., Hiendleder, S. G., Memili, E., Spurlock, D., Williams, J. L., Alexander, L., Brownstein, M. J., Guan, L., Holt, R. A., Jones, S. J. M., Marra, M. A., Moore, R., Moore, S. S., Roberts, A., Taniguchi, M., Waterman, R. C., Chacko, J., Chandrabose, M. M., Cree, A., Dao, M. D., Dinh, H. H., Gabisi, R. A., Hines, S., Hume, J., Jhangiani, S. N., Joshi, V., Kovar, C. L., Lewis, L. R., Liu, Y. S., Lopez, J., Morgan, M. B., Nguyen, N. B., Okwuonu, G. O., Ruiz, S. J., Santibanez, J., Wright, R. A., Buhay, C., Ding, Y., Dugan-Rocha, S., Herdandez, J., Holder, M., Sabo, A., Egan, A., Goodell, J., Wilczek-Boney, K., Fowler, G. R., Hitchens, M. E., Lozado, R. J., Moen, C., Steffen, D., Warren, J. T., Zhang, J., Chiu, R., Schein, J. E., Durbin, K. J., Havlak, P., Jiang, H., Liu, Y., Qin, X., Ren, Y., Shen, Y., Song, H., Bell, S. N., Davis, C., Johnson, A. J., Lee, S., Nazareth, L. V., Patel, B. M., Pu, L. L., Vattathil, S., Williams, R. L., Curry, S., Hamilton, C., Sodergren, E., Wheeler, D. A., Barris, W., Bennett, G. L., Eggen, A., Green, R. D., Harhay, G. P., Hobbs, M., Jann, O., Keele, J. W., Kent, M. P., Lien, S., McKay, S. D., McWilliam, S., Ratnakumar, A., Schnabel, R. D., Smith, T., Snelling, W. M., Sonstegard, T. S., Stone, R. T., Sugimoto, Y., Takasuga, A., Taylor, J. F., Van Tassell, C. P., MacNeil, M. D., Abatepaulo, A. R. R., Abbey, C. A., Ahola, V., Almeida, L. G., Amadio, A. F., Anatriello, E., Bahadue, S. M., Biase, F. H., Boldt, C. R., Carroll, J. A., Carvalho, W. A., Cervelatti, E. P., Chacko, E., Chapin, J. E., Cheng, Y., Choi, J., Colley, A. J., DeCampos, T. A., De Donato, M., De Miranda Santos, I. K. F., De Oliveira, C. J. F., Deobald, H., Devinoy, E., Donohue, K. E., Dove, P., Eberlein, A., Fitzsimmons, C. J., Franzin, A. M., Garcia, G. R., Genini, S., Gladney, C. J., Grant, J. R., Greaser, M. L., Green, J. A., Hadsell, D. L., Hakimov, H. A., Halgren, R., Harrow, J. L., Hart, E. A., Hastings, N., Hernandez, M., Hu, Z. L., Iivanainen, A., Ingham, A., Iso-Touru, T., Jamis, C., Jensen, K., Kapetis, D., Kerr, T., Khalil, S. S., Khatib, H., Kolbehdari, D., Kumar, C. G., Kumar, D., Leach, R., Lee, J. C. M., Li, C., Logan, K. M., Malinverni, R., Marques, E., Martin, W. F., Martins, N. F., Maruyama, S. R., Mazza, R., McLean, K. L., Medrano, J. F., Moreno, B. T., More, D. D., Muntean, C. T., Nandakumar, H. P., Nogueira, M. F. G., Olsaker, I., Pant, S. D., Panzitta, F., Pastor, R. C. P., Poli, M. A., Poslusny, N., Rachagani, S., Ranganathan, S., Razpet, A., Riggs, P. K., Rincón, G., Rodriguez-Osorio, N., Rodriguez-Zas, S. L., Romero, N. E., Rosenwald, A., Sando, L., Schmutz, S. M., Shen, L., Sherman, L., Southey, B. R., Lutzow, Y. S., Sweedler, J. V., Tammen, I., Telugu, B. P. V. L., Urbanski, J. M., Utsunomiya, Y. T., Verschoor, C. P., Waardenberg, A. J., Wang, Z., Ward, R., WeiKard, R., Welsh, T. H., White, S. N., Wilming, L. G., Wunderlich, K. R., Yang, J. & Zhao, F. Q., 24 Apr 2009, In : Science. 324, 5926, p. 522-528 7 p.

Research output: Contribution to journalArticle

760 Citations (Scopus)

The gramicidin A channel: comparison of the energy profiles of Na+, K+ and Cs+. Influence of the flexibility of the ethanolamine end chain on the profiles

Etchebest, C., Ranganathan, S. & Pullman, A., 6 Aug 1984, In : FEBS Letters. 173, 2, p. 301-306 6 p.

Research output: Contribution to journalArticle

31 Citations (Scopus)

The gramicidin A channel: theoretical energy profile computed for single occupancy by a divalent cation, Ca2+

Etchebest, C., Pullman, A. & Ranganathan, S., 8 Aug 1985, In : BBA - Biomembranes. 818, 1, p. 23-30 8 p.

Research output: Contribution to journalArticle

15 Citations (Scopus)

The hand, foot and mouth disease virus capsid: sequence analysis and prediction of antigenic sites from homology modelling.

Ranganathan, S., Singh, S., Poh, C. L. & Chow, V. T., 2002, In : Appl Bioinformatics. 1, 1, p. 43-52 10 p.

Research output: Contribution to journalArticle

29 Citations (Scopus)

The integrin αLβ2 hybrid domain serves as a link for the propagation of activation signal from its stalk regions to the I-like domain

Tng, E., Tan, S. M., Ranganathan, S., Cheng, M. & Law, S. K. A., 24 Dec 2004, In : Journal of Biological Chemistry. 279, 52, p. 54334-54339 6 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)

The S-Star Trial Bioinformatics course: An on-line learning success

Lim, Y. P., Höög, J. O., Gardner, P., Ranganathan, S., Andersson, S., Subbiah, S., Tan, T. W., Hide, W. & Weiss, A. S., Jan 2003, In : Biochemistry and Molecular Biology Education. 31, 1, p. 20-23 4 p.

Research output: Contribution to journalArticle

13 Citations (Scopus)

The transcriptome analysis of strongyloides stercoralis L3i larvae reveals targets for intervention in a neglected disease

Marcilla, A., Garg, G., Bernal, D., Ranganathan, S., Forment, J., Ortiz, J., Muñoz-Antolí, C., Dominguez, M. V., Pedrola, L., Martinez-Blanch, J., Sotillo, J., Trelis, M., Toledo, R. & Esteban, J. G., Feb 2012, In : PLoS Neglected Tropical Diseases. 6, 2, p. 1-9 9 p., e1513.

Research output: Contribution to journalArticle

Open Access
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22 Citations (Scopus)
23 Downloads (Pure)

The transcriptome of Echinostoma caproni adults: Further characterization of the secretome and identification of new potential drug targets

Garg, G., Bernal, D., Trelis, M., Forment, J., Ortiz, J., Valero, M. L., Pedrola, L., Martinez-Blanch, J., Esteban, J. G., Ranganathan, S., Toledo, R. & Marcilla, A., 26 Aug 2013, In : Journal of Proteomics. 89, p. 202-214 13 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)
3 Citations (Scopus)

The whey acidic protein family: A new signature motif and three-dimensional structure by comparative modeling

Ranganathan, S., Simpson, K. J., Shaw, D. C. & Nicholas, K. R., Apr 1999, In : Journal of Molecular Graphics and Modelling. 17, 2, p. 106-113 8 p.

Research output: Contribution to journalArticle

119 Citations (Scopus)

Towards a career in bioinformatics

Ranganathan, S., 3 Dec 2009, In : BMC Bioinformatics. 10, SUPPL. 15, p. 1-4 4 p., S1.

Research output: Contribution to journalEditorial

Open Access
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11 Citations (Scopus)
2 Downloads (Pure)

Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference

Ranganathan, S., Schönbach, C., Kelso, J., Rost, B., Nathan, S. & Tan, T. W., 30 Nov 2011, In : BMC Bioinformatics. 12, SUPPL. 13, p. 1-4 4 p., S1.

Research output: Contribution to journalEditorial

Open Access
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17 Citations (Scopus)
55 Downloads (Pure)

Towards BioDBcore: A community-defined information specification for biological databases

Gaudet, P., Bairoch, A., Field, D., Sansone, S. A., Taylor, C., Attwood, T. K., Bateman, A., Blake, J. A., Bult, C. J., Cherry, J. M., Chisholm, R. L., Cochrane, G., Cook, C. E., Eppig, J. T., Galperin, M. Y., Gentleman, R., Goble, C. A., Gojobori, T., Hancock, J. M., Howe, D. G. & 18 others, Imanishi, T., Kelso, J., Landsman, D., Lewis, S. E., Mizrachi, I. K., Orchard, S., Ouellette, B. F. F., Ranganathan, S., Richardson, L., Rocca-Serra, P., Schofield, P. N., Smedley, D., Southan, C., Tan, T. W., Tatusova, T., Whetzel, P. L., White, O. & Yamasaki, C., 2011, In : Database. 2011, p. 1-6 6 p., baq027.

Research output: Contribution to journalArticle

16 Citations (Scopus)

Towards BioDBcore: a community-defined information specification for biological databases

Gaudet, P., Bairoch, A., Field, D., Sansone, S. A., Taylor, C., Attwood, T. K., Bateman, A., Blake, J. A., Bult, C. J., Cherry, J. M., Chisholm, R. L., Cochrane, G., Cook, C. E., Eppig, J. T., Galperin, M. Y., Gentleman, R., Goble, C. A., Gojobori, T., Hancock, J. M., Howe, D. G. & 18 others, Imanishi, T., Kelso, J., Landsman, D., Lewis, S. E., Karsch-Mizrachi, I., Orchard, S., Ouellette, B. F. F., Ranganathan, S., Richardson, L., Rocca-Serra, P., Schofield, P. N., Smedley, D., Southan, C., Tan, T. W., Tatusova, T., Whetzel, P. L., White, O. & Yamasaki, C., Jan 2011, In : Nucleic acids research. 39, SUPPL. 1, p. D7-D10 4 p.

Research output: Contribution to journalArticle

Open Access
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26 Citations (Scopus)
3 Downloads (Pure)

Transcriptional changes in the hookworm, Ancylostoma caninum, during the transition from a free-living to a parasitic larva

Datu, B. J. D., Gasser, R. B., Nagaraj, S. H., Ong, E. K., O'Donoghue, P., McInnes, R., Ranganathan, S. & Loukas, A., Jan 2008, In : PLoS Neglected Tropical Diseases. 2, 1, p. 1-15 15 p., e130.

Research output: Contribution to journalArticle

66 Citations (Scopus)

Transcriptome analysis reveals pathogenicity and evolutionary history of the pathogenic oomycete Pythium insidiosum

Krajaejun, T., Lerksuthirat, T., Garg, G., Lowhnoo, T., Yingyong, W., Khositnithikul, R., Tangphatsornruang, S., Suriyaphol, P., Ranganathan, S. & Sullivan, T. D., 2014, In : Fungal Biology. 118, 7, p. 640-653 14 p.

Research output: Contribution to journalArticle

17 Citations (Scopus)

TranSeqAnnotator: large-scale analysis of transcriptomic data.

Menon, R., Garg, G., Gasser, R. B. & Ranganathan, S., 2012, In : BMC Bioinformatics. 13, Suppl 17, p. 1-7 7 p., S24.

Research output: Contribution to journalConference paper

3 Citations (Scopus)

TR Germline Bias

Ranganathan, S., 2013, Encyclopedia of Systems Biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 2212-2212 1 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

TR recognition of MHC-peptide complexes

Khan, J. & Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 2212-2218 7 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

Understanding TR binding to pMHC complexes: how does a TR scan many pMHC complexes yet preferentially bind to one

Khan, J. M. & Ranganathan, S., 2011, In : PLoS ONE. 6, 2, p. 1-12 12 p., e17194.

Research output: Contribution to journalArticle

Open Access
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8 Citations (Scopus)
9 Downloads (Pure)

Unlocking the puzzling biology of the Black Périgord truffle Tuber melanosporum

Islam, M. T., Mohamedali, A., Garg, G., Khan, J. M., Gorse, A. D., Parsons, J., Marshall, P., Ranganathan, S. & Baker, M. S., 6 Dec 2013, In : Journal of Proteome Research. 12, 12, p. 5349-5356 8 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)

Untangling biological networks using bioinformatics

Kumar, G., Cootes, A. P. & Ranganathan, S., 2011, Algorithms in computational molecular biology: Techniques, approaches and applications. Elloumi, M. & Zomaya, A. Y. (eds.). Oxford: Wiley-Blackwell, Wiley, p. 867-892 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Whole-genome sequence of Schistosoma haematobium

Young, N. D., Jex, A. R., Li, B., Liu, S., Yang, L., Xiong, Z., Li, Y., Cantacessi, C., Hall, R. S., Xu, X., Chen, F., Wu, X., Zerlotini, A., Oliveira, G., Hofmann, A., Zhang, G., Fang, X., Kang, Y., Campbell, B. E., Loukas, A. & 8 others, Ranganathan, S., Rollinson, D., Rinaldi, G., Brindley, P. J., Yang, H., Wang, J., Wang, J. & Gasser, R. B., Feb 2012, In : Nature Genetics. 44, 2, p. 221-225 5 p.

Research output: Contribution to journalArticle

273 Citations (Scopus)

Wormsplice: An alternative splicing database of C. Elegans using splicing graphs

Bollina, D. & Ranganathan, S., 2004, p. 7-7. 1 p.

Research output: Contribution to conferenceAbstract

XdomView: Protein domain and exon position visualization

Vivek, G., Tan, T. W. & Ranganathan, S., 1 Jan 2003, In : Bioinformatics. 19, 1, p. 159-160 2 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Xpro: database of eukaryotic protein-encoding genes

Gopalan, V., Tan, T. W., Lee, B. T. K. & Ranganathan, S., 1 Jan 2004, In : Nucleic acids research. 32, Database issue, p. D59-D63 5 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)

Κ-Hefutoxin1, a novel toxin from the Scorpion Heterometrus fulvipes with unique structure and function

Srinivasan, K. N., Sivaraja, V., Huys, I., Sasaki, T., Cheng, B., Kumar, T. K. S., Sato, K., Tytgat, J., Yu, C., San, B. C. C., Ranganathan, S., Bowie, H. J., Kini, R. M. & Gopalakrishnakone, P., 16 Aug 2002, In : Journal of Biological Chemistry. 277, 33, p. 30040-30047 8 p.

Research output: Contribution to journalArticle