• 5414 Citations
  • 37 h-Index
1980 …2021

Research output per year

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Research Outputs

Abstract

Aligning mRNA/EST data to geneomic sequences: a novel approach

Ranganathan, S., 2004, p. 24-24. 1 p.

Research output: Contribution to conferenceAbstract

Alternative Splicing: Bridging the Gap Between the Genome and the Transcriptome

Ranganathan, S., 2004, p. 51-51. 1 p.

Research output: Contribution to conferenceAbstract

Chemoinformatics module for CMKb, a custromary medicinal database

Khanna, V., Gaikwad, J. A., Jamie, J. F. & Ranganathan, S., 2008.

Research output: Contribution to conferenceAbstract

Classification of BNIP2-Cdc42GAP homology domain family

Tan, T. W., Tan, K. H., Ranganathan, S. & Low, B. C., 2004, p. 14-14. 1 p.

Research output: Contribution to conferenceAbstract

Combating medicinal plant extinction and indigenous culture loss - an Australian Model

Gaikwad, J., Jamie, J. F., Vemulpad, S., Kohen, J. & Ranganathan, S., 2009.

Research output: Contribution to conferenceAbstract

Drosophila melanogaster Exon Database

Lee, B. T. K., Ranganathan, S. & Tan, T. W., 2004, p. 14-14. 1 p.

Research output: Contribution to conferenceAbstract

Flexible Docking of Pemphigus Vulgaris Peptides to MHC Class II DR and DQ Alleles

Tong, J. C., Ranganathan, S., Bramson, J., Kanduc, D. & Sinha, A., 2004, p. 40-40. 1 p.

Research output: Contribution to conferenceAbstract

Integration of protein Interaction and Metabolic Data for Subcellular Localization Prediction

Cootes, A., Nevalainen, H. K. M. & Ranganathan, S., 2008, p. P98-P98. 1 p.

Research output: Contribution to conferenceAbstract

Mapping Alternate splice variants onto protein structures using biocomputing methods

Ranganathan, S., Gopalan, V. & Madhwacharyula, C. L., 2004, p. 3-3. 1 p.

Research output: Contribution to conferenceAbstract

Representing Transcript Diversity in the Drosophila Melanogaster Genome using Splicing Graphs

Ranganathan, S., Lee, B. T. K. & Tan, T. W., 2004, p. 30-30. 1 p.

Research output: Contribution to conferenceAbstract

SigPep: A Database for Signal Peptides

Choo, K. H., Ranganathan, S. & Tan, T. W., 2004, p. 12-12. 1 p.

Research output: Contribution to conferenceAbstract

Wormsplice: An alternative splicing database of C. Elegans using splicing graphs

Bollina, D. & Ranganathan, S., 2004, p. 7-7. 1 p.

Research output: Contribution to conferenceAbstract

Article

Ab initio study of the stepwise hydration of NO+

Pullman, A. & Ranganathan, S., 25 May 1984, In : Chemical Physics Letters. 107, 2, p. 107-111 5 p.

Research output: Contribution to journalArticle

19 Citations (Scopus)

Accurate prediction of scorpion toxin functional properties from primary structures

Tan, P. T. J., Srinivasan, K. N., Seah, S. H., Koh, J. L. Y., Tan, T. W., Ranganathan, S. & Brusic, V., Sep 2005, In : Journal of Molecular Graphics and Modelling. 24, 1, p. 17-24 8 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)

A comprehensive assessment of N-terminal signal peptides prediction methods

Choo, K. H., Tan, T. W. & Ranganathan, S., 3 Dec 2009, In : BMC Bioinformatics. 10, SUPPL. 15, p. 1-12 12 p., S2.

Research output: Contribution to journalArticle

49 Citations (Scopus)

A computational analysis of the electrostatic potentials and relative bond strengths of hydrazine and some of its 1,1‐dimethyl derivatives

Murray, J. S., Sukumar, N., Ranganathan, S. & Politzer, P., 1990, In : International Journal of Quantum Chemistry. 37, 5, p. 611-629 19 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)
Open Access
File
58 Downloads (Pure)

Advances in translational bioinformatics and population genomics in the Asia-Pacific

Ranganathan, S., Tongsima, S., Chan, J., Tan, T. W. & Schönbach, C., 2012, In : BMC Genomics. 13, Suppl 7, p. 1-4 4 p., S1.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
2 Downloads (Pure)

Advancing standards for bioinformatics activities: persistence, reproducibility, disambiguation and Minimum Information About a Bioinformatics investigation (MIABi)

Tan, T. W., Tong, J. C., Khan, A. M., de Silva, M., Lim, K. S. & Ranganathan, S., 2 Dec 2010, In : BMC Genomics. 11, Supplement 4, p. 1-7 7 p., S27.

Research output: Contribution to journalArticle

Open Access
File
19 Citations (Scopus)
16 Citations (Scopus)

A multi-factor model for caspase degradome prediction

Wee, L. J. K., Tong, J. C., Tan, T. W. & Ranganathan, S., 3 Dec 2009, In : BMC Genomics. 10, SUPPL. 3, p. 1-12 12 p., S6.

Research output: Contribution to journalArticle

10 Citations (Scopus)
Open Access
File
7 Citations (Scopus)
1 Downloads (Pure)

An ab initio study of the binding of N2 to Na+ and K+

Pullman, A., Sklenar, H. & Ranganathan, S., 5 Oct 1984, In : Chemical Physics Letters. 110, 4, p. 346-350 5 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

An analysis of the transcriptome of Teladorsagia circumcincta: its biological and biotechnological implications

Menon, R., Gasser, R. B., Mitreva, M. & Ranganathan, S., 2012, In : BMC Genomics. 13, Suppl 7, p. 1-17 17 p., S10.

Research output: Contribution to journalArticle

13 Citations (Scopus)

An ethnobotanical study of medicinal plants used by the Yaegl Aboriginal community in northern New South Wales, Australia

Packer, J., Brouwer, N., Harrington, D., Gaikwad, J., Heron, R., Yaegl Community Elders, C. E., Ranganathan, S., Vemulpad, S. & Jamie, J., 6 Jan 2012, In : Journal of Ethnopharmacology. 139, 1, p. 244-255 12 p.

Research output: Contribution to journalArticle

Open Access
File
30 Citations (Scopus)
1333 Downloads (Pure)
179 Citations (Scopus)

A novel multiplexed immunoassay identifies CEA, IL-8 and prolactin as prospective markers for Dukes' stages A-D colorectal cancers

Mahboob, S., Ahn, S. B., Cheruku, H. R., Cantor, D., Rennel, E., Fredriksson, S., Edfeldt, G., Breen, E. J., Khan, A., Mohamedali, A., Muktadir, M. G., Ranganathan, S., Tan, S. H., Nice, E. & Baker, M. S., 2015, In : Clinical Proteomics. 12, 1, p. 1-12 12 p., 10.

Research output: Contribution to journalArticle

Open Access
File
17 Citations (Scopus)
19 Downloads (Pure)

APBioNet: the Asia-Pacific regional consortium for bioinformatics

Ranganathan, S., Subbiah, S. & Tan, T. W., 2002, In : Appl Bioinformatics. 1, 2, p. 101-105 5 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

APBioNet-transforming bioinformatics in the Asia-Pacific Region

Khan, A. M., Tan, T. W., Schönbach, C. & Ranganathan, S., 31 Oct 2013, In : PLoS Computational Biology. 9, 10, p. 1-3 3 p., e1003317.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
18 Downloads (Pure)

A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing

Cantacessi, C., Jex, A. R., Hall, R. S., Young, N. D., Campbell, B. E., Joachim, A., Nolan, M. J., Abubucker, S., Sternberg, P. W., Ranganathan, S., Mitreva, M. & Gasser, R. B., 1 Sep 2010, In : Nucleic acids research. 38, 17, p. e171 1 p.

Research output: Contribution to journalArticle

58 Citations (Scopus)

A practical guide to structure-based prediction of MHC-binding peptides

Ranganathan, S. & Tong, J. C., 2007, In : Methods in molecular biology (Clifton, N.J.). 409, p. 301-308 8 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

A proposed minimum skill set for university graduates to meet the informatics needs and challenges of the "-omics" era

Tan, T. W., Lim, S. J., Khan, A. M. & Ranganathan, S., 3 Dec 2009, In : BMC Genomics. 10, SUPPL. 3, p. 1-6 6 p., S36.

Research output: Contribution to journalArticle

29 Citations (Scopus)

Ascaris suum draft genome

Jex, A. R., Liu, S., Li, B., Young, N. D., Hall, R. S., Li, Y., Yang, L., Zeng, N., Xu, X., Xiong, Z., Chen, F., Wu, X., Zhang, G., Fang, X., Kang, Y., Anderson, G. A., Harris, T. W., Campbell, B. E., Vlaminck, J., Wang, T. & 10 others, Cantacessi, C., Schwarz, E. M., Ranganathan, S., Geldhof, P., Nejsum, P., Sternberg, P. W., Yang, H., Wang, J., Wang, J. & Gasser, R. B., 24 Nov 2011, In : Nature. 479, 7374, p. 529-533 5 p.

Research output: Contribution to journalArticle

179 Citations (Scopus)

ASGS: an alternative splicing graph web service

Bollina, D., Lee, B. T. K., Tan, T. W. & Ranganathan, S., Jul 2006, In : Nucleic acids research. 34, WEB. SERV. ISS., p. W444-W447 4 p.

Research output: Contribution to journalArticle

Open Access
File
12 Citations (Scopus)
4 Downloads (Pure)

A site for direct integrin αvβ6·uPAR interaction from structural modelling and docking

Sowmya, G., Khan, J. M., Anand, S., Ahn, S. B., Baker, M. S. & Ranganathan, S., Mar 2014, In : Journal of Structural Biology. 185, 3, p. 327-335 9 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

A transcriptomic analysis of the adult stage of the bovine lungworm, Dictyocaulus viviparus

Ranganathan, S., Nagaraj, S. H., Hu, M., Strube, C., Schnieder, T. & Gasser, R. B., 5 Sep 2007, In : BMC Genomics. 8, p. 1-13 13 p., 311.

Research output: Contribution to journalArticle

Open Access
File
14 Citations (Scopus)

A workflow for mutation extraction and structure annotation

Kanagasabai, R., Choo, K. H., Ranganathan, S. & Baker, C. J. O., Dec 2007, In : Journal of Bioinformatics and Computational Biology. 5, 6, p. 1319-1337 19 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)

Bioinformatic analysis of abundant, gender-enriched transcripts of adult Ascaris suum (Nematoda) using a semi-automated workflow platform

Cantacessi, C., Zou, F. C., Hall, R. S., Zhong, W., Jex, A. R., Campbell, B. E., Ranganathan, S., Sternberg, P. W., Zhu, X. Q. & Gasser, R. B., Oct 2009, In : Molecular and Cellular Probes. 23, 5, p. 205-217 13 p.

Research output: Contribution to journalArticle

15 Citations (Scopus)

Bond-order-bond-energy correlations

Politzer, P. & Ranganathan, S., 14 Mar 1986, In : Chemical Physics Letters. 124, 6, p. 527-530 4 p.

Research output: Contribution to journalArticle

46 Citations (Scopus)

CASVM: web server for SVM-based prediction of caspase substrates cleavage sites

Wee, L. J. K., Tan, T. W. & Ranganathan, S., Dec 2007, In : Bioinformatics. 23, 23, p. 3241-3243 3 p.

Research output: Contribution to journalArticle

54 Citations (Scopus)

Characterization of the interaction between heterodimeric αvβ6 integrin and urokinase plasminogen activator receptor (uPAR) using functional proteomics

Ahn, S. B., Mohamedali, A., Anand, S., Cheruku, H. R., Birch, D., Sowmya, G., Cantor, D., Ranganathan, S., Inglis, D. W., Frank, R., Agrez, M., Nice, E. C. & Baker, M. S., 5 Dec 2014, In : Journal of Proteome Research. 13, 12, p. 5956-5964 9 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)

Cloning and molecular characterization of the first aquatic hyaluronidase, SFHYA1, from the venom of stonefish (Synanceja horrida)

Ng, H. C., Ranganathan, S., Chua, K. L. & Khoo, H. E., 14 Feb 2005, In : Gene. 346, p. 71-81 11 p.

Research output: Contribution to journalArticle

23 Citations (Scopus)

CMKb: a web-based prototype for integrating Australian Aboriginal customary medicinal plant knowledge

Gaikwad, J., Khanna, V., Vemulpad, S., Jamie, J., Kohen, J. & Ranganathan, S., 12 Dec 2008, In : BMC Bioinformatics. 9, SUPPL. 12, p. 1-8 8 p., S25.

Research output: Contribution to journalArticle

14 Citations (Scopus)

Coherence analysis discriminates between retroviral integration patterns in CD34+ cells transduced under differing clinical trial conditions

Hallwirth, C. V., Garg, G., Peters, T. J., Kramer, B. A., Malani, N. V., Hyman, J., Ruan, X., Ginn, S. L., Hetherington, N. A., Veeravalli, L., Shahab, A., Ranganathan, S., Wei, C. L., Liddle, C., Thrasher, A. J., Bushman, F. D., Buckley, M. J. & Alexander, I. E., 29 Apr 2015, In : Molecular Therapy - Methods and Clinical Development. 2, p. 1-10 10 p., 15015.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
8 Downloads (Pure)

Complement factor H: sequence analysis of 221 kb of human genomic DNA containing the entire fH, fHR-1 and fHR-3 genes

Male, D. A., Ormsby, R. J., Ranganathan, S., Giannakis, E. & Gordon, D. L., 1 Jan 2000, In : Molecular Immunology. 37, 1-2, p. 41-52 12 p.

Research output: Contribution to journalArticle

45 Citations (Scopus)

Compliant fields for formic acid and formamide

Murthy, A. S. N. & Ranganathan, S., 1983, In : Journal of the Chemical Society, Faraday Transactions 2: Molecular and Chemical Physics. 79, 11, p. 1699-1706 8 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Compliant fields for molecular interactions: Water dimer and formic acid dimer

Murthy, A. S. N. & Ranganathan, S., 1985, In : International Journal of Quantum Chemistry. 27, 5, p. 547-557 11 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Compliant fields for molecular interactions I: Lithium cation with carbonyl donors

Murthy, A. S. N. & Ranganathan, S., Dec 1982, In : Proceedings of the Indian Academy of Sciences - Chemical Sciences. 91, 6, p. 535-545 11 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Compliant fields for water, ammonia and methane

Murthy, A. S. N. & Ranganathan, S., 1983, In : Journal of Molecular Structure: THEOCHEM. 104, 1-2, p. 1-8 8 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Comprehensive splicing graph analysis of alternative splicing patterns in chicken, compared to human and mouse

Chacko, E. & Ranganathan, S., 7 Jul 2009, In : BMC Genomics. 10, SUPPL. 1, p. 1-11 11 p., S5.

Research output: Contribution to journalArticle

16 Citations (Scopus)