• 5255 Citations
  • 37 h-Index
1980 …2021
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Research Outputs 1980 2019

Abstract

Aligning mRNA/EST data to geneomic sequences: a novel approach

Ranganathan, S., 2004, p. 24-24. 1 p.

Research output: Contribution to conferenceAbstractResearch

Alternative Splicing: Bridging the Gap Between the Genome and the Transcriptome

Ranganathan, S., 2004, p. 51-51. 1 p.

Research output: Contribution to conferenceAbstractResearch

Chemoinformatics module for CMKb, a custromary medicinal database

Khanna, V., Gaikwad, J. A., Jamie, J. F. & Ranganathan, S., 2008.

Research output: Contribution to conferenceAbstractResearch

Classification of BNIP2-Cdc42GAP homology domain family

Tan, T. W., Tan, K. H., Ranganathan, S. & Low, B. C., 2004, p. 14-14. 1 p.

Research output: Contribution to conferenceAbstractResearch

Combating medicinal plant extinction and indigenous culture loss - an Australian Model

Gaikwad, J., Jamie, J. F., Vemulpad, S., Kohen, J. & Ranganathan, S., 2009.

Research output: Contribution to conferenceAbstractResearch

Drosophila melanogaster Exon Database

Lee, B. T. K., Ranganathan, S. & Tan, T. W., 2004, p. 14-14. 1 p.

Research output: Contribution to conferenceAbstractResearch

Flexible Docking of Pemphigus Vulgaris Peptides to MHC Class II DR and DQ Alleles

Tong, J. C., Ranganathan, S., Bramson, J., Kanduc, D. & Sinha, A., 2004, p. 40-40. 1 p.

Research output: Contribution to conferenceAbstractResearch

Integration of protein Interaction and Metabolic Data for Subcellular Localization Prediction

Cootes, A., Nevalainen, H. K. M. & Ranganathan, S., 2008, p. P98-P98. 1 p.

Research output: Contribution to conferenceAbstractResearch

Mapping Alternate splice variants onto protein structures using biocomputing methods

Ranganathan, S., Gopalan, V. & Madhwacharyula, C. L., 2004, p. 3-3. 1 p.

Research output: Contribution to conferenceAbstractResearch

Representing Transcript Diversity in the Drosophila Melanogaster Genome using Splicing Graphs

Ranganathan, S., Lee, B. T. K. & Tan, T. W., 2004, p. 30-30. 1 p.

Research output: Contribution to conferenceAbstractResearch

SigPep: A Database for Signal Peptides

Choo, K. H., Ranganathan, S. & Tan, T. W., 2004, p. 12-12. 1 p.

Research output: Contribution to conferenceAbstractResearch

Wormsplice: An alternative splicing database of C. Elegans using splicing graphs

Bollina, D. & Ranganathan, S., 2004, p. 7-7. 1 p.

Research output: Contribution to conferenceAbstractResearch

Article

Ab initio study of the stepwise hydration of NO+

Pullman, A. & Ranganathan, S., 25 May 1984, In : Chemical Physics Letters. 107, 2, p. 107-111 5 p.

Research output: Contribution to journalArticleResearchpeer-review

Hydrates
Hydration
hydration
zero point energy
hydrates

Accurate prediction of scorpion toxin functional properties from primary structures

Tan, P. T. J., Srinivasan, K. N., Seah, S. H., Koh, J. L. Y., Tan, T. W., Ranganathan, S. & Brusic, V., Sep 2005, In : Journal of Molecular Graphics and Modelling. 24, 1, p. 17-24 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Bioinformatics
functional analysis
annotations
Functional analysis
predictions

A comprehensive assessment of N-terminal signal peptides prediction methods

Choo, K. H., Tan, T. W. & Ranganathan, S., 3 Dec 2009, In : BMC Bioinformatics. 10, SUPPL. 15, p. 1-12 12 p., S2.

Research output: Contribution to journalArticleResearchpeer-review

Protein Sorting Signals
Peptides
Prediction
Proteins
Protein

A computational analysis of the electrostatic potentials and relative bond strengths of hydrazine and some of its 1,1‐dimethyl derivatives

Murray, J. S., Sukumar, N., Ranganathan, S. & Politzer, P., 1990, In : International Journal of Quantum Chemistry. 37, 5, p. 611-629 19 p.

Research output: Contribution to journalArticleResearchpeer-review

hydrazine
hydrazines
Electrostatics
Nitrogen
electrostatics
Open Access
File
Protease Inhibitors
Edetic Acid
Blood
Plasmas
Electrophoresis

Advances in translational bioinformatics and population genomics in the Asia-Pacific

Ranganathan, S., Tongsima, S., Chan, J., Tan, T. W. & Schönbach, C., 2012, In : BMC Genomics. 13, Suppl 7, p. 1-4 4 p., S1.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Metagenomics
Computational Biology
Precision Medicine
Thailand
Genomics

Advancing standards for bioinformatics activities: persistence, reproducibility, disambiguation and Minimum Information About a Bioinformatics investigation (MIABi)

Tan, T. W., Tong, J. C., Khan, A. M., de Silva, M., Lim, K. S. & Ranganathan, S., 2 Dec 2010, In : BMC Genomics. 11, Supplement 4, p. 1-7 7 p., S27.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Bioinformatics
Computational Biology
bioinformatics
reproducibility
compliance

A male-specific (cysteine-rich) protein of Oesophagostomum dentatum (Strongylida) with structural characteristics of a serine protease inhibitor containing two trypsin inhibitor-like domains

Boag, P. R., Ranganathan, S., Newton, S. E. & Gasser, R. B., 1 Nov 2002, In : Parasitology. 125, 5, p. 445-455 11 p.

Research output: Contribution to journalArticleResearchpeer-review

Strongylida
Oesophagostomum dentatum
Oesophagostomum
Serine Proteinase Inhibitors
Trypsin Inhibitors

A multi-factor model for caspase degradome prediction

Wee, L. J. K., Tong, J. C., Tan, T. W. & Ranganathan, S., 3 Dec 2009, In : BMC Genomics. 10, SUPPL. 3, p. 1-12 12 p., S6.

Research output: Contribution to journalArticleResearchpeer-review

caspases
Caspases
prediction
Substrates
Cell death

A multi-species comparative structural bioinformatics analysis of inherited mutations in α-D-mannosidase reveals strong genotype-phenotype correlation

Khan, J. M. & Ranganathan, S., 3 Dec 2009, In : BMC Genomics. 10, SUPPL. 3, p. 1-10 10 p., S33.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
mannosidases
alpha-Mannosidase
Genetic Association Studies
Bioinformatics
Computational Biology

An ab initio study of the binding of N2 to Na+ and K+

Pullman, A., Sklenar, H. & Ranganathan, S., 5 Oct 1984, In : Chemical Physics Letters. 110, 4, p. 346-350 5 p.

Research output: Contribution to journalArticleResearchpeer-review

Complexation
Binding energy
Enthalpy
zero point energy
self consistent fields

An analysis of the transcriptome of Teladorsagia circumcincta: its biological and biotechnological implications

Menon, R., Gasser, R. B., Mitreva, M. & Ranganathan, S., 2012, In : BMC Genomics. 13, Suppl 7, p. 1-17 17 p., S10.

Research output: Contribution to journalArticleResearchpeer-review

Gene Expression Profiling
Proteins
Expressed Sequence Tags
Parasites
Cysteine Proteases

An ethnobotanical study of medicinal plants used by the Yaegl Aboriginal community in northern New South Wales, Australia

Packer, J., Brouwer, N., Harrington, D., Gaikwad, J., Heron, R., Yaegl Community Elders, C. E., Ranganathan, S., Vemulpad, S. & Jamie, J., 6 Jan 2012, In : Journal of Ethnopharmacology. 139, 1, p. 244-255 12 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
South Australia
New South Wales
Medicinal Plants
Plant Preparations
Health Services Research

An integrated transcriptomics and proteomics analysis of the secretome of the helminth pathogen Fasciola hepatica: Proteins associated with invasion and infection of the mammalian host

Robinson, M. W., Menon, R., Donnelly, S. M., Dalton, J. P. & Ranganathan, S., 2009, In : Molecular and Cellular Proteomics. 8, 8, p. 1891-1907 17 p.

Research output: Contribution to journalArticleResearchpeer-review

Fasciola hepatica
Helminths
Pathogens
Proteomics
Parasites

A novel multiplexed immunoassay identifies CEA, IL-8 and prolactin as prospective markers for Dukes' stages A-D colorectal cancers

Mahboob, S., Ahn, S. B., Cheruku, H. R., Cantor, D., Rennel, E., Fredriksson, S., Edfeldt, G., Breen, E. J., Khan, A., Mohamedali, A., Muktadir, M. G., Ranganathan, S., Tan, S. H., Nice, E. & Baker, M. S., 2015, In : Clinical Proteomics. 12, 1, p. 1-12 12 p., 10.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Carcinoembryonic Antigen
Interleukin-8
Immunoassay
Prolactin
Colorectal Neoplasms

APBioNet: the Asia-Pacific regional consortium for bioinformatics

Ranganathan, S., Subbiah, S. & Tan, T. W., 2002, In : Appl Bioinformatics. 1, 2, p. 101-105 5 p.

Research output: Contribution to journalArticleResearchpeer-review

Bioinformatics
Computational Biology
bioinformatics
Genomics
genomics

APBioNet-transforming bioinformatics in the Asia-Pacific Region

Khan, A. M., Tan, T. W., Schönbach, C. & Ranganathan, S., 31 Oct 2013, In : PLoS Computational Biology. 9, 10, p. 1-3 3 p., e1003317.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File

A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing

Cantacessi, C., Jex, A. R., Hall, R. S., Young, N. D., Campbell, B. E., Joachim, A., Nolan, M. J., Abubucker, S., Sternberg, P. W., Ranganathan, S., Mitreva, M. & Gasser, R. B., 1 Sep 2010, In : Nucleic acids research. 38, 17, p. e171 1 p.

Research output: Contribution to journalArticleResearchpeer-review

Workflow
Computational Biology
Oesophagostomum
Research Personnel
Boidae

A practical guide to structure-based prediction of MHC-binding peptides

Ranganathan, S. & Tong, J. C., 2007, In : Methods in molecular biology (Clifton, N.J.). 409, p. 301-308 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Major Histocompatibility Complex
Peptides
Ligands
Structural Models
Alleles

A proposed minimum skill set for university graduates to meet the informatics needs and challenges of the "-omics" era

Tan, T. W., Lim, S. J., Khan, A. M. & Ranganathan, S., 3 Dec 2009, In : BMC Genomics. 10, SUPPL. 3, p. 1-6 6 p., S36.

Research output: Contribution to journalArticleResearchpeer-review

Informatics
Bioinformatics
Computational Biology
bioinformatics
biologists

Ascaris suum draft genome

Jex, A. R., Liu, S., Li, B., Young, N. D., Hall, R. S., Li, Y., Yang, L., Zeng, N., Xu, X., Xiong, Z., Chen, F., Wu, X., Zhang, G., Fang, X., Kang, Y., Anderson, G. A., Harris, T. W., Campbell, B. E., Vlaminck, J., Wang, T. & 10 othersCantacessi, C., Schwarz, E. M., Ranganathan, S., Geldhof, P., Nejsum, P., Sternberg, P. W., Yang, H., Wang, J., Wang, J. & Gasser, R. B., 24 Nov 2011, In : Nature. 479, 7374, p. 529-533 5 p.

Research output: Contribution to journalArticleResearchpeer-review

Ascaris suum
Ascaris
Genome
Ascariasis
Necator

ASGS: an alternative splicing graph web service

Bollina, D., Lee, B. T. K., Tan, T. W. & Ranganathan, S., Jul 2006, In : Nucleic acids research. 34, WEB. SERV. ISS., p. W444-W447 4 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Alternative Splicing
Eukaryota
Exons
Recombinant DNA
Genes

A site for direct integrin αvβ6·uPAR interaction from structural modelling and docking

Sowmya, G., Khan, J. M., Anand, S., Ahn, S. B., Baker, M. S. & Ranganathan, S., Mar 2014, In : Journal of Structural Biology. 185, 3, p. 327-335 9 p.

Research output: Contribution to journalArticleResearchpeer-review

Plasminogen
Urokinase-Type Plasminogen Activator
Integrins
Integrin alpha Chains
Immunoprecipitation

A transcriptomic analysis of the adult stage of the bovine lungworm, Dictyocaulus viviparus

Ranganathan, S., Nagaraj, S. H., Hu, M., Strube, C., Schnieder, T. & Gasser, R. B., 5 Sep 2007, In : BMC Genomics. 8, p. 1-13 13 p., 311.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Dictyocaulus
Expressed Sequence Tags
Transcriptome
Infertility
Genes

A workflow for mutation extraction and structure annotation

Kanagasabai, R., Choo, K. H., Ranganathan, S. & Baker, C. J. O., Dec 2007, In : Journal of Bioinformatics and Computational Biology. 5, 6, p. 1319-1337 19 p.

Research output: Contribution to journalArticleResearchpeer-review

Workflow
Visualization
Ontology
Mutation
Pipelines

Bioinformatic analysis of abundant, gender-enriched transcripts of adult Ascaris suum (Nematoda) using a semi-automated workflow platform

Cantacessi, C., Zou, F. C., Hall, R. S., Zhong, W., Jex, A. R., Campbell, B. E., Ranganathan, S., Sternberg, P. W., Zhu, X. Q. & Gasser, R. B., Oct 2009, In : Molecular and Cellular Probes. 23, 5, p. 205-217 13 p.

Research output: Contribution to journalArticleResearchpeer-review

Ascaris suum
Nematoda
Workflow
Caenorhabditis elegans
Computational Biology

Bond-order-bond-energy correlations

Politzer, P. & Ranganathan, S., 14 Mar 1986, In : Chemical Physics Letters. 124, 6, p. 527-530 4 p.

Research output: Contribution to journalArticleResearchpeer-review

Chemical bonds
Bond length
Molecules
polyatomic molecules
chemical bonds

CASVM: web server for SVM-based prediction of caspase substrates cleavage sites

Wee, L. J. K., Tan, T. W. & Ranganathan, S., Dec 2007, In : Bioinformatics. 23, 23, p. 3241-3243 3 p.

Research output: Contribution to journalArticleResearchpeer-review

Web Server
Caspases
Support vector machines
Support Vector Machine
Servers

Characterization of the interaction between heterodimeric αvβ6 integrin and urokinase plasminogen activator receptor (uPAR) using functional proteomics

Ahn, S. B., Mohamedali, A., Anand, S., Cheruku, H. R., Birch, D., Sowmya, G., Cantor, D., Ranganathan, S., Inglis, D. W., Frank, R., Agrez, M., Nice, E. C. & Baker, M. S., 5 Dec 2014, In : Journal of Proteome Research. 13, 12, p. 5956-5964 9 p.

Research output: Contribution to journalArticleResearchpeer-review

Urokinase Plasminogen Activator Receptors
Integrins
Proteomics
Ligation
Assays

Cloning and molecular characterization of the first aquatic hyaluronidase, SFHYA1, from the venom of stonefish (Synanceja horrida)

Ng, H. C., Ranganathan, S., Chua, K. L. & Khoo, H. E., 14 Feb 2005, In : Gene. 346, p. 71-81 11 p.

Research output: Contribution to journalArticleResearchpeer-review

Hyaluronoglucosaminidase
Venoms
Molecular Cloning
Amino Acid Sequence
Complementary DNA

CMKb: a web-based prototype for integrating Australian Aboriginal customary medicinal plant knowledge

Gaikwad, J., Khanna, V., Vemulpad, S., Jamie, J., Kohen, J. & Ranganathan, S., 12 Dec 2008, In : BMC Bioinformatics. 9, SUPPL. 12, p. 1-8 8 p., S25.

Research output: Contribution to journalArticleResearchpeer-review

Knowledge Bases
Medicinal Plants
prototypes
Knowledge Base
Web-based

Coherence analysis discriminates between retroviral integration patterns in CD34+ cells transduced under differing clinical trial conditions

Hallwirth, C. V., Garg, G., Peters, T. J., Kramer, B. A., Malani, N. V., Hyman, J., Ruan, X., Ginn, S. L., Hetherington, N. A., Veeravalli, L., Shahab, A., Ranganathan, S., Wei, C. L., Liddle, C., Thrasher, A. J., Bushman, F. D., Buckley, M. J. & Alexander, I. E., 29 Apr 2015, In : Molecular Therapy - Methods and Clinical Development. 2, p. 1-10 10 p., 15015.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Clinical Trials
Genetic Therapy
Hematopoietic System
Insertional Mutagenesis
Paris

Complement factor H: sequence analysis of 221 kb of human genomic DNA containing the entire fH, fHR-1 and fHR-3 genes

Male, D. A., Ormsby, R. J., Ranganathan, S., Giannakis, E. & Gordon, D. L., 1 Jan 2000, In : Molecular Immunology. 37, 1-2, p. 41-52 12 p.

Research output: Contribution to journalArticleResearchpeer-review

Complement Factor H
Sequence Analysis
Exons
Consensus
DNA

Compliant fields for formic acid and formamide

Murthy, A. S. N. & Ranganathan, S., 1983, In : Journal of the Chemical Society, Faraday Transactions 2: Molecular and Chemical Physics. 79, 11, p. 1699-1706 8 p.

Research output: Contribution to journalArticleResearchpeer-review

formic acid
redundancy
Redundancy
formalism
valence

Compliant fields for molecular interactions: Water dimer and formic acid dimer

Murthy, A. S. N. & Ranganathan, S., 1985, In : International Journal of Quantum Chemistry. 27, 5, p. 547-557 11 p.

Research output: Contribution to journalArticleResearchpeer-review

formic acid
Molecular interactions
molecular interactions
Dimers
dimers

Compliant fields for molecular interactions I: Lithium cation with carbonyl donors

Murthy, A. S. N. & Ranganathan, S., Dec 1982, In : Proceedings of the Indian Academy of Sciences - Chemical Sciences. 91, 6, p. 535-545 11 p.

Research output: Contribution to journalArticleResearchpeer-review

Molecular interactions
Lithium
Stretching
Cations
Formaldehyde

Compliant fields for water, ammonia and methane

Murthy, A. S. N. & Ranganathan, S., 1983, In : Journal of Molecular Structure: THEOCHEM. 104, 1-2, p. 1-8 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Methane
Ammonia
Compliance
ammonia
methane

Comprehensive splicing graph analysis of alternative splicing patterns in chicken, compared to human and mouse

Chacko, E. & Ranganathan, S., 7 Jul 2009, In : BMC Genomics. 10, SUPPL. 1, p. 1-11 11 p., S5.

Research output: Contribution to journalArticleResearchpeer-review

Alternative Splicing
Chickens
Genes
Exons
Introns