• 5414 Citations
  • 37 h-Index
1980 …2021

Research output per year

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Research Outputs

Article

Computational evaluation and comparison of some nitramine properties

Politzer, P., Sukumar, N., Jayasuriya, K. & Ranganathan, S., 1 Jan 1988, In : Journal of the American Chemical Society. 110, 11, p. 3425-3430 6 p.

Research output: Contribution to journalArticle

43 Citations (Scopus)

Correlations between the solvent hydrogen bond acceptor parameter β and the calculated molecular electrostatic potential

Murray, J. S., Ranganathan, S. & Politzer, P., 1991, In : Journal of Organic Chemistry. 56, 11, p. 3734-3737 4 p.

Research output: Contribution to journalArticle

118 Citations (Scopus)

Cracking the nodule worm code advances knowledge of parasite biology and biotechnology to tackle major diseases of livestock

Tyagi, R., Joachim, A., Ruttkowski, B., Rosa, B. A., Martin, J. C., Hallsworth-Pepin, K., Zhang, X., Ozersky, P., Wilson, R. K., Ranganathan, S., Sternberg, P. W., Gasser, R. B. & Mitreva, M., 1 Nov 2015, In : Biotechnology Advances. 33, 6 Pt 1, p. 980-991 12 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)

DEDB: a database of Drosophila melanogaster exons in splicing graph form

Lee, B. T. K., Tan, T. W. & Ranganathan, S., 7 Dec 2004, In : BMC Bioinformatics. 5, p. 1-8 8 p., 189.

Research output: Contribution to journalArticle

26 Citations (Scopus)

Deduction of functional peptide motifs in scorpion toxins

Tan, P. T. J., Ranganathan, S. & Brusic, V., Jun 2006, In : Journal of Peptide Science. 12, 6, p. 420-427 8 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)

Delineation of modular proteins: domain boundary prediction from sequence information.

Kong, L. & Ranganathan, S., Jun 2004, In : Briefings in Bioinformatics. 5, 2, p. 179-192 14 p.

Research output: Contribution to journalArticle

23 Citations (Scopus)

Discrete structural features among interface residue-level classes

Sowmya, G. & Ranganathan, S., 9 Dec 2015, In : BMC Bioinformatics. 16, p. 1-8 8 p., S8.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
5 Downloads (Pure)

Divergent response of homologous ATP sites to stereospecific ligand fluorination for selectivity enhancement

Patel, A. R., Hardianto, A., Ranganathan, S. & Liu, F., 21 Feb 2017, In : Organic and Biomolecular Chemistry. 15, 7, p. 1570-1574 5 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Diverse dynamics features of novel protein kinase C (PKC) isozymes determine the selectivity of a fluorinated balanol analogue for PKCϵ

Hardianto, A., Khanna, V., Liu, F. & Ranganathan, S., 4 Feb 2019, In : BMC Bioinformatics. 19, Suppl. 13, 11 p., 342.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
6 Downloads (Pure)
17 Citations (Scopus)

Emerging strengths in Asia Pacific bioinformatics

Ranganathan, S., Hsu, W. L., Yang, U. C. & Tan, T. W., 12 Dec 2008, In : BMC Bioinformatics. 9, SUPPL. 12, p. 1-5 5 p., S1.

Research output: Contribution to journalArticle

Open Access
File
5 Citations (Scopus)
1 Downloads (Pure)

ESTExplorer: An expressed sequence tag (EST) assembly and annotation platform

Nagaraj, S. H., Deshpande, N., Gasser, R. B. & Ranganathan, S., Jul 2007, In : Nucleic acids research. 35, SUPPL.2, p. 1-5 5 p.

Research output: Contribution to journalArticle

Open Access
File
48 Citations (Scopus)
4 Downloads (Pure)

First transcriptomic analysis of the economically important parasitic nematode, Trichostrongylus colubriformis, using a next-generation sequencing approach

Cantacessi, C., Mitreva, M., Campbell, B. E., Hall, R. S., Young, N. D., Jex, A. R., Ranganathan, S. & Gasser, R. B., Dec 2010, In : Infection, Genetics and Evolution. 10, 8, p. 1199-1207 9 p.

Research output: Contribution to journalArticle

43 Citations (Scopus)

Flanking signal and mature peptide residues influence signal peptide cleavage

Choo, K. H. & Ranganathan, S., 12 Dec 2008, In : BMC Bioinformatics. 9, SUPPL. 12, p. 1-11 11 p., S15.

Research output: Contribution to journalArticle

Open Access
File
47 Citations (Scopus)
1 Downloads (Pure)

Functional and structural implications of the complement factor H Y402H polymorphism associated with Age-Related macular degeneration

Ormsby, R. J., Ranganathan, S., Tong, J. C., Griggs, K. M., Dimasi, D. P., Hewitt, A. W., Burdon, K. P., Craig, J. E., Hoh, J. & Gordon, D. L., Apr 2008, In : Investigative Ophthalmology and Visual Science. 49, 5, p. 1763-1770 8 p.

Research output: Contribution to journalArticle

66 Citations (Scopus)

Functional and structural studies of wild SOX9 and mutations causing campomelic dysplasia

McDowall, S., Argentaro, A., Ranganathan, S., Weller, P., Mertin, S., Mansour, S., Tolmie, J. & Harley, V., 20 Aug 1999, In : Journal of Biological Chemistry. 274, 34, p. 24023-24030 8 p.

Research output: Contribution to journalArticle

92 Citations (Scopus)

Functional annotation of the human chromosome 7 "missing" proteins: A bioinformatics approach

Ranganathan, S., Khan, J. M., Garg, G. & Baker, M. S., 2013, In : Journal of Proteome Research. 12, 6, p. 2504-2510 7 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)

Gender-enriched transcripts in Haemonchus contortus - predicted functions and genetic interactions based on comparative analyses with Caenorhabditis elegans

Campbell, B. E., Nagaraj, S. H., Hu, M., Zhong, W., Sternberg, P. W., Ong, E. K., Loukas, A., Ranganathan, S., Beveridge, I., McInnes, R. L., Hutchinson, G. W. & Gasser, R. B., Jan 2008, In : International Journal for Parasitology. 38, 1, p. 65-83 19 p.

Research output: Contribution to journalArticle

33 Citations (Scopus)

Genome of the human hookworm Necator americanus

Tang, Y. T., Gao, X., Rosa, B. A., Abubucker, S., Hallsworth-Pepin, K., Martin, J., Tyagi, R., Heizer, E., Zhang, X., Bhonagiri-Palsikar, V., Minx, P., Warren, W. C., Wang, Q., Zhan, B., Hotez, P. J., Sternberg, P. W., Dougall, A., Gaze, S. T., Mulvenna, J., Sotillo, J. & 9 others, Ranganathan, S., Rabelo, E. M., Wilson, R. K., Felgner, P. L., Bethony, J., Hawdon, J. M., Gasser, R. B., Loukas, A. & Mitreva, M., 2014, In : Nature Genetics. 46, 3, p. 261-269 9 p.

Research output: Contribution to journalArticle

107 Citations (Scopus)

Genome-wide analysis of alternative splicing in cow: implications in bovine as a model for human diseases

Chacko, E. & Ranganathan, S., 3 Dec 2009, In : BMC Genomics. 10, Supplement 3, p. 1-13 13 p., S11.

Research output: Contribution to journalArticle

Open Access
File
15 Citations (Scopus)

Genomic characterization of Tv-ant-1, a Caenorhabditis elegans tag-61 homologue from the parasitic nematode Trichostrongylus vitrinus

Hu, M., Campbell, B. E., Pellegrino, M., Loukas, A., Beveridge, I., Ranganathan, S. & Gasser, R. B., 1 Aug 2007, In : Gene. 397, 1-2, p. 12-25 14 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

GIW and InCoB are advancing bioinformatics in the Asia-Pacific

Schönbach, C., Horton, P., Yiu, S. M., Tan, T. W. & Ranganathan, S., 18 Dec 2015, In : BMC Bioinformatics. 16, 18, p. 1-5 5 p., I1.

Research output: Contribution to journalArticle

Open Access
File

Human Prestin: a candidate PE1 protein lacking stringent mass spectrometric evidence?

Mohamedali, A., Ahn, S. B., Sreenivasan, V. K. A., Ranganathan, S. & Baker, M. S., 1 Dec 2017, In : Journal of Proteome Research. 16, 12, p. 4531-4535 5 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)
58 Citations (Scopus)

Identification of ovarian cancer associated genes using an integrated approach in a Boolean framework

Kumar, G., Breen, E. J. & Ranganathan, S., 6 Feb 2013, In : BMC Systems Biology. 7, p. 1-14 14 p., 12.

Research output: Contribution to journalArticle

Open Access
File
8 Citations (Scopus)
4 Downloads (Pure)

InCoB2012 Conference: from biological data to knowledge to technological breakthroughs

Schönbach, C., Tongsima, S., Chan, J., Brusic, V., Tan, T. W. & Ranganathan, S., 2012, In : BMC Bioinformatics. 13, Suppl 17, p. 1-6 6 p., S1.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)

InCoB2013 introduces Systems Biology as a major conference theme

Schönbach, C., Shen, B., Tan, T. W. & Ranganathan, S., 4 Nov 2013, In : BMC Systems Biology. 7, Supplement 3, p. 1-3 3 p.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
4 Downloads (Pure)

InCoB2014: systems biology update from the Asia-Pacific

Ranganathan, S., Tan, T. W. & Schönbach, C., 8 Dec 2014, In : BMC Systems Biology. 8, Suppl. 4, p. 1-2 2 p., I1.

Research output: Contribution to journalArticle

Open Access
File

InCoB2014: bioinformatics to tackle the data to knowledge challenge

Ranganathan, S., Tan, T. W. & Schönbach, C., 8 Dec 2014, In : BMC Bioinformatics. 15, 16, p. 1-3 3 p., I1.

Research output: Contribution to journalArticle

Open Access
File
5 Downloads (Pure)

InCoB2014: mining biological data from genomics for transforming industry and health

Schönbach, C., Tan, T. W. & Ranganathan, S., 8 Dec 2014, In : BMC Genomics. 15, S9, p. 1-4 4 p., I1.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
6 Downloads (Pure)

InCoB celebrates its tenth anniversary as first joint conference with ISCB-Asia

Schönbach, C., Tan, T. W., Kelso, J., Rost, B., Nathan, S. & Ranganathan, S., 30 Nov 2011, In : BMC Genomics. 12, 3, p. 1-4 4 p., S1.

Research output: Contribution to journalArticle

Open Access
File
3 Citations (Scopus)

In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): Comparison of the automated ESTExplorer workflow platform with conventional database searches

Nagaraj, S. H., Gasser, R. B., Nisbet, A. J. & Ranganathan, S., 13 Feb 2008, In : BMC Bioinformatics. 9, SUPPL. 1, p. 1-17 17 p., S10.

Research output: Contribution to journalArticle

16 Citations (Scopus)

In silico characterization of immunogenic epitopes presented by HLA-Cw*0401

Tong, J. C., Zhang, Z. H., August, J. T., Brusic, V., Tan, T. W. & Ranganathan, S., 2007, In : Immunome Research. 3, 1, p. 1-8 8 p., 7.

Research output: Contribution to journalArticle

Open Access
File
12 Citations (Scopus)

In silico grouping of peptide/HLA class I complexes using structural interaction characteristics

Tong, J. C., Tan, T. W. & Ranganathan, S., 2007, In : Bioinformatics. 23, 2, p. 177-183 7 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)

In silico prediction of immunogenic T cell epitopes for HLA-DQ8

Khan, J. M., Kumar, G. & Ranganathan, S., 2012, In : Immunome Research. 8, 1, p. 1-9 9 p.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
9 Downloads (Pure)
3 Citations (Scopus)

kappa-Hefutoxin1, a novel toxin from the scorpion Heterometrus fulvipes with unique structure and function. Importance of the functional diad in potassium channel selectivity.

Srinivasan, K. N., Sivaraja, V., Huys, I., Sasaki, T., Cheng, B., Kumar, T. K. S., Sato, K., Tytgat, J., Yu, C., San, B. C. C., Ranganathan, S., Bowie, H. J., Kini, R. M. & Gopalakrishnakone, P., 16 Aug 2002, In : Journal of Biological Chemistry. 277, 33, p. 30040-30047 8 p.

Research output: Contribution to journalArticle

107 Citations (Scopus)

Linking structural features of protein complexes and biological function

Sowmya, G., Breen, E. J. & Ranganathan, S., Sep 2015, In : Protein Science. 24, 9, p. 1486-1494 9 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)

Major colour patterns of reef-building corals are due to a family of GFP-like proteins

Dove, S. G., Hoegh-Guldberg, O. & Ranganathan, S., 2001, In : Coral Reefs. 19, 3, p. 197-204 8 p.

Research output: Contribution to journalArticle

188 Citations (Scopus)

Massively parallel sequencing and analysis of the Necator americanus transcriptome

Cantacessi, C., Mitreva, M., Jex, A. R., Young, N. D., Campbell, B. E., Hall, R. S., Doyle, M. A., Ralph, S. A., Rabelo, E. M., Ranganathan, S., Sternberg, P. W., Loukas, A. & Gasser, R. B., May 2010, In : PLoS Neglected Tropical Diseases. 4, 5, p. 1-11 11 p., e684.

Research output: Contribution to journalArticle

Open Access
File
60 Citations (Scopus)
20 Citations (Scopus)

Methods and protocols for prediction of immunogenic epitopes

Tong, J. C., Tan, T. W. & Ranganathan, S., Mar 2007, In : Briefings in Bioinformatics. 8, 2, p. 96-108 13 p.

Research output: Contribution to journalArticle

77 Citations (Scopus)

MGAlignIt: A web service for the alignment of mRNA/EST and genomic sequence

Lee, B. T. K., Tan, T. W. & Ranganathan, S., 2003, In : Nucleic acids research. 31, 13, p. 3533-3536 4 p.

Research output: Contribution to journalArticle

MGAlignlt: A web service for the alignment of mRNA/EST and genomic sequences

Lee, B. T. K., Tan, T. W. & Ranganathan, S., 1 Jul 2003, In : Nucleic acids research. 31, 13, p. 3533-3536 4 p.

Research output: Contribution to journalArticle

31 Citations (Scopus)

Modeling Escherichia coli signal peptidase complex with bound substrate: determinants in the mature peptide influencing signal peptide cleavage

Choo, K. H., Tong, J. C. & Ranganathan, S., 13 Feb 2008, In : BMC Bioinformatics. 9, SUPPL. 1, p. 1-7 7 p., S15.

Research output: Contribution to journalArticle

Open Access
File
11 Citations (Scopus)
2 Downloads (Pure)

Modeling the bound conformation of Permphigus Vulgaris-associated peptides to MHC Class II DR and DQ Alleles

Tong, J. C., Bramson, J., Kanduc, D., Chow, S., Sinha, A. A. & Ranganathan, S., 2006, In : Immunome Research. 2, 1, 10 p.

Research output: Contribution to journalArticle

Open Access
File

Modeling the structure of bound peptide ligands to major histocompatibility complex

Tong, J. C., Tan, T. W. & Ranganathan, S., Sep 2004, In : Protein Science. 13, 9, p. 2523-2532 10 p.

Research output: Contribution to journalArticle

67 Citations (Scopus)

Molecular dynamics pinpoint the global fluorine effect in balanoid binding to PKCϵ and PKA

Hardianto, A., Liu, F. & Ranganathan, S., Feb 2018, In : Journal of Chemical Information and Modeling. 58, 2, p. 511-519 9 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Molecular modeling on the Web

Ranganathan, S., Jan 2001, In : BioTechniques. 30, 1, p. 50-52 3 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)