• 5481 Citations
  • 37 h-Index
1980 …2021

Research output per year

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Research Outputs

Chapter

A systematic bioinformatics approach to identify high quality mass spectrometry data and functionally annotate proteins and proteomes

Islam, M., Mohamedali, A., Ahn, S. B., Nawar, I., Baker, M. S. & Ranganathan, S., 2017, Proteome bionformatics. Keerthikumar, S. & Mathivanan, S. (eds.). New York: Humana Press Inc., p. 163-176 14 p. (Methods in Molecular Biology; vol. 1549).

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Citations (Scopus)

Biological data integration using network models

Kumar, G. & Ranganathan, S., 2014, Biological knowledge discovery handbook: preprocessing, mining and postprocessing of biological data. Elloumi, M. & Zomaya, A. Y. (eds.). Hoboken, New Jersey: John Wiley & Sons, p. 155-173 19 p. (Wiley series on bioinformatics : Computational techniques and engineering.).

Research output: Chapter in Book/Report/Conference proceedingChapter

Chemogenomics approach to computer aided drug discovery

Khanna, V. & Ranganathan, S., 2015, Post-genomic approaches in drug and vaccine development. Sakharkar, K. R., Sakharkar, M. K. & Chandra, R. (eds.). Aalborg, Denmark: River Publishers, p. 93-114 22 p. (River Publishers Series in Research and Business Chronicles-Biotechnology and Medicine; vol. 5).

Research output: Chapter in Book/Report/Conference proceedingChapter

Combining ethnobotany and informatics to discover knowledge from data

Gaikwad, J., Wilson, K., Kohen, J., Vemulpad, S., Jamie, J. & Ranganathan, S., 2011, Ethnomedicinal plants: revitalization of traditional knowledge of herbs. Rai, M., Acharya, D. & Ríos, J. L. (eds.). 1st ed. Enfield, NH: Science Publishers, p. 444-457 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Comparative genomic analysis of glycoylation pathways in yeast, plants and higher eukaryotes

Ranganathan, S., Wongsai, S. & Helena Nevalainen, K. M., 2006, Bioinformatics. Arora, D. K., Berka, R. M. & Singh, G. B. (eds.). Amsterdam: Elsevier, Vol. 6. p. 227-248 22 p. (Applied mycology and biotechnology; vol. 6).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)

De novo peptide sequencing: deep mining of high-resolution mass spectrometry data

Islam, M. T., Mohamedali, A., Fernandes, C. S., Baker, M. S. & Ranganathan, S., 2017, Proteome bioinformatics: Methods in molecular biology. Keerthikumar, S. & Mathivanan, S. (eds.). 1st ed. New York: Humana Press Inc., p. 119-134 16 p. (Methods in Molecular Biology; vol. 1549).

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Citations (Scopus)

Graphs in bioinformatics

Chacko, E. & Ranganathan, S., 2011, Algorithms in computational molecular biology: Techniques, approaches and applications. Elloumi, M. & Zomaya, A. Y. (eds.). Oxford: John Wiley & Sons, p. 192-219 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

High-throughput functional annotation and data mining of fungal genomes to identify therapeutic targets

Garg, G. & Ranganathan, S., 2013, Laboratory protocols in fungal biology: current methods on fungal biology. Gupta, V. K., Tuohy, M. G., Ayyachamy, M., Turner, K. M. & O'Donovan, A. (eds.). New York: Springer, Springer Nature, p. 559-564 6 p. (Fungal biology).

Research output: Chapter in Book/Report/Conference proceedingChapter

Host-pathogen interactions

Southwood, D. & Ranganathan, S., 2019, Encyclopedia of bioinformatics and computational biology: ABC of Bioinformatics. Ranganathan, S., Gribskov, M., Nakai, K. & Schönbach, C. (eds.). Amsterdam: Elsevier, Vol. 3. p. 103-112 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

In silico methods for the analysis of metabolites and drug molecules

Khanna, V. & Ranganathan, S., 2011, Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications. Elloumi, M. & Zomaya, A. Y. (eds.). Hoboken, NJ: John Wiley & Sons, p. 361-381 21 p. (Bioinformatics: Computational Techniques and Engineering).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

Looking for missing proteins

Jabeen, A., Mohamedali, A. & Ranganathan, S., 2019, Reference module in life sciences. Roitberg, B. D., Cotter, P. D., Dixon, B., Giordano, A., Mayor, R., O'Neill, S., Pentimalli, F., Ranganathan, S., Sharfstein, S. T., Vitale, I., Wilson, K., Zaragoza, O. & Zhou, H-X. (eds.). Elsevier, p. 1-15 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Medicinal plants of New South Wales, Australia

Packer, J., Gaikwad, J., Harrington, D., Ranganathan, S., Jamie, J. & Vemulpad, S., 2012, Genetic Resources, chromosome engineering, and crop improvement: Volume 6 : medicinal plants. Singh, R. J. (ed.). Boca Raton ; London ; New York: CRC Press, Taylor & Francis Group, Vol. 6. p. 259-296 38 p. (Genetic Resources, chromosome engineering, and crop improvement series).

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecular Modeling on the web

Ranganathan, S., 2003, Biocomputing: Computer Tools for Biologists. Stuart M. Brown (ed.). Westborough, MA: Biotechniques Press, Eaton Publishing, p. 411-417 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Rational structure-based drug design

Khanna, V., Ranganathan, S. & Petrovsky, N., 2019, Encyclopedia of bioinformatics and computational biology: ABC of Bioinformatics. Ranganathan, S., Gribskov, M., Nakai, K. & Schönbach, C. (eds.). Amsterdam: Elsevier, Vol. 2. p. 585-600 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Structural immunoinformatics: understanding MHC-Peptide-TR binding

Khan, J. M., Tong, J. C. & Ranganathan, S., 2010, Bioinformatics for immunomics. Flower, D. R., Davies, M. N. & Ranganathan, S. (eds.). New York: Springer, Springer Nature, p. 77-93 17 p. (Immunomics reviews; vol. 3).

Research output: Chapter in Book/Report/Conference proceedingChapter

Structural immunoinformatics

Ranganathan, S., Tong, J. C. & Tan, T. W., 2008, Immunoinformatics. Schönbach, C., Ranganathan, S. & Brusic, V. (eds.). New York: Springer, Springer Nature, p. 51-61 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

Structure-based clustering of major histocompatibility complex (MHC) proteins for broad-based T-cell vaccine design

Tong, J. C., Tan, T. W. & Ranganathan, S., 2014, Immunoinformatics. De, R. K. & Tomar, N. (eds.). 2nd ed. New York: Humana Press, p. 503-511 9 p. (Methods in Molecular Biology; vol. 1184).

Research output: Chapter in Book/Report/Conference proceedingChapter

Untangling biological networks using bioinformatics

Kumar, G., Cootes, A. P. & Ranganathan, S., 2011, Algorithms in computational molecular biology: Techniques, approaches and applications. Elloumi, M. & Zomaya, A. Y. (eds.). Oxford: Wiley-Blackwell, Wiley, p. 867-892 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Comment/opinion

Bioinformatics Education-Perspectives and Challenges

Ranganathan, S., 2005, In : PLoS Computational Biology. 1, 6, p. 0447-0448 2 p., e52.

Research output: Contribution to journalComment/opinion

Open Access
File
35 Citations (Scopus)
3 Downloads (Pure)
Conference paper

APBioNet's annual International Conference on Bioinformatics (InCoB) returns to India in 2018

Ahmad, S., Gromiha, M. M., Raghava, G. P. S., Schönbach, C. & Ranganathan, S., 18 Apr 2019, In : BMC Genomics. 19, Suppl. 9, 4 p., 266.

Research output: Contribution to journalConference paper

Open Access
File
4 Downloads (Pure)

Bioinformatics approaches for improving seminal plasma proteome analysis

Noor, Z. & Ranganathan, S., 1 Oct 2019, In : Theriogenology. 137, p. 43-49 7 p.

Research output: Contribution to journalConference paper

Computational analysis of the receptor binding specificity of novel influenza A/H7N9 viruses

Zhou, X., Zheng, J., Ivan, F. X., Yin, R., Ranganathan, S., Chow, V. T. K. & Kwoh, C-K., 9 May 2018, In : BMC Genomics. 19, Suppl 2, p. 1-10 10 p., 88.

Research output: Contribution to journalConference paper

Open Access
File
1 Citation (Scopus)
7 Downloads (Pure)

Exploration of charge states of balanol analogues acting as ATP-competitive inhibitors in kinases

Hardianto, A., Yusuf, M., Liu, F. & Ranganathan, S., 28 Dec 2017, In : BMC Bioinformatics. 18, Suppl 16, p. 19-30 12 p., 572.

Research output: Contribution to journalConference paper

Open Access
File
6 Citations (Scopus)
9 Downloads (Pure)

Helminth secretome database (HSD): a collection of helminth excretory/secretory proteins predicted from expressed sequence tags (ESTs)

Garg, G. & Ranganathan, S., 2012, In : BMC Genomics. 13, p. 1-11 11 p., S8.

Research output: Contribution to journalConference paper

Open Access
File
26 Citations (Scopus)
31 Downloads (Pure)

In silico approach to screen compounds active against parasitic nematodes of major socio-economic importance

Khanna, V. & Ranganathan, S., 30 Nov 2011, In : BMC Bioinformatics. 12, Suppl 13, p. 1-12 12 p., S25.

Research output: Contribution to journalConference paper

8 Citations (Scopus)

Network analysis of human protein location

Kumar, G. & Ranganathan, S., 2010, In : BMC Bioinformatics. 11 Suppl 7, S9, p. 1-15 15 p., S9.

Research output: Contribution to journalConference paper

11 Citations (Scopus)

Simple re-instantiation of small databases using cloud computing

Tan, T. W., Xie, C., De Silva, M., Lim, K. S., Patro, C. P. K., Lim, S. J., Govindarajan, K. R., Tong, J. C., Choo, K. H., Ranganathan, S. & Khan, A. M., 2013, In : BMC Genomics. 14, Suppl 5, p. 1-4 4 p., S13.

Research output: Contribution to journalConference paper

Open Access
File
2 Citations (Scopus)
4 Downloads (Pure)

TranSeqAnnotator: large-scale analysis of transcriptomic data.

Menon, R., Garg, G., Gasser, R. B. & Ranganathan, S., 2012, In : BMC Bioinformatics. 13, Suppl 17, p. 1-7 7 p., S24.

Research output: Contribution to journalConference paper

3 Citations (Scopus)
Conference proceeding contribution

A comparative structural bioinformatics analysis of inherited mutations in b-D-Mannosidase across multiple species reveals a genotype-phenotype correlation

Huynh, T., Khan, J. M. & Ranganathan, S., 2011, 10th Int. Conference on Bioinformatics - 1st ISCB Asia Joint Conference 2011, InCoB 2011/ISCB-Asia 2011: Computational Biology - Proceedings from Asia Pacific Bioinformatics Network (APBioNet). Schoenbach, C., Nathan, S., Tan, T. W. & Ranganathan, S. (eds.). United Kingdom: Springer, Springer Nature, Vol. 12, Suppl. 3. p. 1-13 13 p. S22

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contribution

9 Citations (Scopus)

Antisense suppression of a cytokinin-binding protein from Petunia causes excessive branching and reduces adventitious shoot bud induction in vitro

Kumar, P. P., Kumar, B. D. & Ranganathan, S., 2003, Plant biotechnology 2002 and beyond: proceedings of the 10th IAPTC&B Congress June 23–28, 2002 Orlando, Florida, U.S.A.. Vasil, I. K. (ed.). Dordrech: Springer, Springer Nature, p. 285-287 3 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contribution

Biomarker information extraction tool (BIET) development using natural language processing and machine learning

Islam, M. T., Shaikh, M., Nayak, A. & Ranganathan, S., 2010, ICWET 2010 - International Conference and Workshop on Emerging Trends in Technology 2010, Conference Proceedings. New York: ACM, p. 121-126 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contribution

7 Citations (Scopus)

Extracting biomarker information applying natural language processing and machine learning

Islam, M. T., Shaikh, M., Nayak, A. & Ranganathan, S., 2010, 2010 4th International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2010. Piscataway, NJ: Institute of Electrical and Electronics Engineers (IEEE), p. 1-4 4 p. 5514717

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contribution

Open Access
File
1 Citation (Scopus)
36 Downloads (Pure)

In silico secretome analysis approach for next generation sequencing transcriptomic data

Garg, G. & Ranganathan, S., 2011, 10th International Conference on Bioinformatics. First ISCB Asia Joint Conference 2011 (InCoB/ISCB-Asia 2011): Computational Biology. Schoenbach, C., Nathan, S., Tan, T. W. & Ranganathan, S. (eds.). Piscataway, N.J.: Institute of Electrical and Electronics Engineers (IEEE), Vol. 12, Suppl. 3. p. 1-10 10 p. S14

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contribution

25 Citations (Scopus)

Intelligent agent system for bio-medical literature mining

Islam, M. T., Bollina, D., Nayak, A. & Ranganathan, S., 2007, ICICT 2007: Proceedings of International Conference on Information and Communication Technology. Kabir, S. M. L. (ed.). Dhaka, Bangladesh: ICICT, p. 57-63 7 p. 4261365

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contribution

Open Access
File
12 Downloads (Pure)

MVC Architecture in Bioinformatics web applications and its Java implementation

Ranganathan, S., Bollina, D. & Lee, B. T. K., 2005, iiWAS 2005: the Seventh International Conference on Information Integration and Web-based Applications & Services : September 19-21, 2005, Kuala Lumpur, Malaysia. Kotsis, G., Tanier, D., Bressan, S., Ibrahim, I. K., Mokhtar & Salimah (eds.). Austrian Computer Society, p. 759-764 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contribution

SGS: splicing graph server

Bollina, D., Lee, B. T. K. & Ranganathan, S., 2005, Proceedings of the 2005 International Joint Conference of InCoB, AASBi and KSBi. Lee, D., Wong, L., Kim, D-W., Kim, S., Tan, T. W. & Lee, K-H. (eds.). Korea: InCoB, AASBi and KSBi, p. 47-50 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contribution

Edited Book/Anthology

Bioinformatics for immunomics

Flower, D. D. R. (ed.), Davies, M. (ed.) & Ranganathan, S. (ed.), 2010, New York: Springer, Springer Nature. 187 p. (Immunomics reviews)

Research output: Book/ReportEdited Book/Anthology

Encyclopedia of bioinformatics and computational biology

Ranganathan, S. (ed.), Gribskov, M. (ed.), Nakai, K. (ed.) & Schönbach, C. (ed.), 2019, Amsterdam; Oxford; Cambridge: Elsevier. 3346 p.

Research output: Book/ReportEdited Book/Anthology

Immunoinformatics

Schönbach, C. (ed.), Ranganathan, S. (ed.) & Brusic, V. (ed.), 2008, New York: Springer, Springer Nature. 200 p.

Research output: Book/ReportEdited Book/Anthology

2 Citations (Scopus)

Proceedings, Seventh International Conference on Bioinformatics (InCoB2008) Taipei, Taiwan. 20-23 October 2008

Ranganathan, S. (ed.), Hsu, W-L. (ed.), Yang, U-C. (ed.) & Tan, T. W. (ed.), 2008, London: Springer, Springer Nature.

Research output: Book/ReportEdited Book/Anthology

Editorial

2016 update on APBioNet's annual international conference on bioinformatics (InCoB)

Schönbach, C., Verma, C., Wee, L. J. K., Bond, P. J. & Ranganathan, S., 22 Dec 2016, In : BMC Genomics. 17, Suppl.13, p. 1-4 4 p., 1036.

Research output: Contribution to journalEditorial

Open Access
File
1 Citation (Scopus)
8 Downloads (Pure)

A bioinformatics potpourri

Schönbach, C., Li, J., Ma, L., Horton, P., Sjaugi, M. F. & Ranganathan, S., 19 Jan 2018, In : BMC Genomics. 19, Suppl 1, 6 p., 920.

Research output: Contribution to journalEditorial

Open Access
File
13 Downloads (Pure)

A hitchhiker's guide to expressed sequence tag (EST) analysis

Nagaraj, S. H., Gasser, R. B. & Ranganathan, S., Jan 2007, In : Briefings in Bioinformatics. 8, 1, p. 6-21 16 p.

Research output: Contribution to journalEditorial

193 Citations (Scopus)

Bioinformatics and systems biology research update from the 15th International Conference on Bioinformatics (InCoB2016)

Schönbach, C., Verma, C., Bond, P. J. & Ranganathan, S., 22 Dec 2016, In : BMC Bioinformatics. 17, Suppl.19, p. 1-4 4 p., 524.

Research output: Contribution to journalEditorial

Open Access
File
2 Citations (Scopus)
7 Downloads (Pure)

Bioinformatics research in the Asia Pacific: a 2007 update

Ranganathan, S., Gribskov, M. & Tan, T. W., 2008, In : BMC Bioinformatics. 9, Suppl. 1, p. 1-4 4 p., S1.

Research output: Contribution to journalEditorial

Open Access
File
5 Citations (Scopus)
2 Downloads (Pure)

Challenges of the next decade for the Asia Pacific region: 2010 International Conference in Bioinformatics (InCoB 2010)

Ranganathan, S., Schönbach, C., Nakai, K. & Tan, T. W., 2 Oct 2010, In : BMC Genomics. 11, Supplement 4, p. 1-6 6 p., S1.

Research output: Contribution to journalEditorial

8 Citations (Scopus)

Critical technologies for bioinformatics

Brusic, V. & Ranganathan, S., Jul 2008, In : Briefings in Bioinformatics. 9, 4, p. 261-262 2 p.

Research output: Contribution to journalEditorial

2 Citations (Scopus)

Editorial overview: theory and simulation: demystifying GPCRs – structure, function and drug design

Ranganathan, S. & Blundell, T. L., Apr 2019, In : Current Opinion in Structural Biology. 55, p. vi-viii 3 p.

Research output: Contribution to journalEditorial

Establishing bioinformatics research in the Asia Pacific

Ranganathan, S., Tammi, M., Gribskov, M. & Tan, T. W., 18 Dec 2006, In : BMC Bioinformatics. 7, SUPPL.5, p. 1-4 4 p., S1.

Research output: Contribution to journalEditorial

Open Access
File
7 Citations (Scopus)
2 Downloads (Pure)

Extending Asia Pacific bioinformatics into new realms in the "-omics" era

Ranganathan, S., Eisenhaber, F., Tong, J. C. & Tan, T. W., 3 Dec 2009, In : BMC Genomics. 10, SUPPL. 3, p. 1-5 5 p., S1.

Research output: Contribution to journalEditorial

Open Access
File
5 Citations (Scopus)
5 Downloads (Pure)