• 5497 Citations
  • 37 h-Index
1980 …2019

Research output per year

If you made any changes in Pure these will be visible here soon.

Research Outputs

Review article

Accelerating the search for the missing proteins in the human proteome

Baker, M. S., Ahn, S. B., Mohamedali, A., Islam, M. T., Cantor, D., Verhaert, P. D., Fanayan, S., Sharma, S., Nice, E. C., Connor, M. & Ranganathan, S., 24 Jan 2017, In : Nature Communications. 8, p. 1-13 13 p., 14271.

Research output: Contribution to journalReview article

Open Access
File
48 Citations (Scopus)
28 Downloads (Pure)

A common site within factor H SCR 7 responsible for binding heparin, C-reactive protein and streptococcal M protein

Giannakis, E., Jokiranta, T. S., Male, D. A., Ranganathan, S., Ormsby, R. J., Fischetti, V. A., Mold, C. & Gordon, D. L., 1 Apr 2003, In : European Journal of Immunology. 33, 4, p. 962-969 8 p.

Research output: Contribution to journalReview article

132 Citations (Scopus)
23 Citations (Scopus)

Applications of machine learning in GPCR bioactive ligand discovery

Jabeen, A. & Ranganathan, S., Apr 2019, In : Current Opinion in Structural Biology. 55, p. 66-76 11 p.

Research output: Contribution to journalReview article

4 Citations (Scopus)

Bioinformatics meets parasitology

Cantacessi, C., Campbell, B. E., Jex, A. R., Young, N. D., Hall, R. S., Ranganathan, S. & Gasser, R. B., May 2012, In : Parasite Immunology. 34, 5, p. 265-275 11 p.

Research output: Contribution to journalReview article

19 Citations (Scopus)
Open Access
File
7 Citations (Scopus)
149 Downloads (Pure)

Deep insights into Dictyocaulus viviparus transcriptomes provides unique prospects for new drug targets and disease intervention

Cantacessi, C., Gasser, R. B., Strube, C., Schnieder, T., Jex, A. R., Hall, R. S., Campbell, B. E., Young, N. D., Ranganathan, S., Sternberg, P. W. & Mitreva, M., May 2011, In : Biotechnology Advances. 29, 3, p. 261-271 11 p.

Research output: Contribution to journalReview article

25 Citations (Scopus)

Improved insights into the transcriptomes of the human hookworm Necator americanus - Fundamental and biotechnological implications

Rabelo, E. M., Hall, R. S., Loukas, A., Cooper, L., Hu, M., Ranganathan, S. & Gasser, R. B., Mar 2009, In : Biotechnology Advances. 27, 2, p. 122-132 11 p.

Research output: Contribution to journalReview article

15 Citations (Scopus)

Molecular similarity and diversity approaches in chemoinformatics

Khanna, V. & Ranganathan, S., Feb 2011, In : Drug Development Research. 72, 1, p. 74-84 11 p.

Research output: Contribution to journalReview article

10 Citations (Scopus)

Oesophagostomum dentatum - Potential as a model for genomic studies of strongylid nematodes, with biotechnological prospects

Gasser, R. B., Cottee, P., Nisbet, A. J., Ruttkowski, B., Ranganathan, S. & Joachim, A., May 2007, In : Biotechnology Advances. 25, 3, p. 281-293 13 p.

Research output: Contribution to journalReview article

18 Citations (Scopus)

Quest for missing proteins: update 2015 on chromosome-centric human proteome project

Horvatovich, P., Lundberg, E. K., Chen, Y. J., Sung, T. Y., He, F., Nice, E. C., Goode, R. J., Yu, S., Ranganathan, S., Baker, M. S., Domont, G. B., Velasquez, E., Li, D., Liu, S., Wang, Q., He, Q. Y., Menon, R., Guan, Y., Corrales, F. J., Segura, V. & 34 others, Casal, J. I., Pascual-Montano, A., Albar, J. P., Fuentes, M., Gonzalez-Gonzalez, M., Diez, P., Ibarrola, N., Degano, R. M., Mohammed, Y., Borchers, C. H., Urbani, A., Soggiu, A., Yamamoto, T., Salekdeh, G. H., Archakov, A., Ponomarenko, E., Lisitsa, A., Lichti, C. F., Mostovenko, E., Kroes, R. A., Rezeli, M., Végvári, Á., Fehniger, T. E., Bischoff, R., Vizcaíno, J. A., Deutsch, E. W., Lane, L., Nilsson, C. L., Marko-Varga, G., Omenn, G. S., Jeong, S. K., Lim, J. S., Paik, Y. K. & Hancock, W. S., 4 Sep 2015, In : Journal of Proteome Research. 14, 9, p. 3415-3431 17 p.

Research output: Contribution to journalReview article

50 Citations (Scopus)

Secretome: Clues into pathogen infection and clinical applications

Ranganathan, S. & Garg, G., 30 Nov 2009, In : Genome Medicine. 1, 11, p. 1-7 7 p., 113.

Research output: Contribution to journalReview article

35 Citations (Scopus)

Structural bioinformatics analysis of variants on GPCR function

Syed Haneef, S. A. & Ranganathan, S., Apr 2019, In : Current Opinion in Structural Biology. 55, p. 161-177 17 p.

Research output: Contribution to journalReview article

1 Citation (Scopus)

Systems proteomics view of the endogenous human claudin protein family

Liu, F., Koval, M., Ranganathan, S., Fanayan, S., Hancock, W. S., Lundberg, E. K., Beavis, R. C., Lane, L., Duek, P., McQuade, L., Kelleher, N. L. & Baker, M. S., 5 Feb 2016, In : Journal of Proteome Research. 15, 2, p. 339-359 21 p.

Research output: Contribution to journalReview article

10 Citations (Scopus)
Other journal contribution

Meeting report from the second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop

Kettner, C., Field, D., Sansone, S. A., Taylor, C., Aerts, J., Binns, N., Blake, A., Britten, C. M., Marco, A., Fostel, J., Gaudet, P., González-Beltrán, A., Hardy, N., Hellemans, J., Hermjakob, H., Juty, N., Leebens-Mack, J., Maguire, E., Neumann, S., Orchard, S. & 9 others, Parkinson, H., Piel, W., Ranganathan, S., Rocca-Serra, P., Santarsiero, A., Shotton, D., Sterk, P., Untergasser, A. & Whetzel, P. L., 31 Dec 2010, In : Standards in Genomic Sciences. 3, 3, p. 259-266 8 p.

Research output: Contribution to journalOther journal contribution

Open Access
File
3 Downloads (Pure)
Meeting abstract

Analysis and comparison of γ-retroviral vector integration behaviour in human CD34+cells transduced under conditions employed in the French and English SCID-X1 clinical trials

Hallwirth, C. V., Garg, G., Malani, N. V., Peters, T., Hetherington, N., Hyman, J., Kramer, B., Ginn, S. L., Ruan, X., Ranganathan, S., Buckley, M., Bushman, F. D. & Alexander, I. E., Aug 2013, In : Journal of Gene Medicine. 15, 8-9, p. 315-316 2 p.

Research output: Contribution to journalMeeting abstract

Database on neurotoxins from snakes

Joyce, S. P. Y., Steffanie, K. C. Y., Ramkishen, P. N., Armugam, A., Ranganathan, S. & Jeyaseelan, K., Dec 2003, In : Journal of Neurochemistry. 87, S1, p. 139-139 1 p.

Research output: Contribution to journalMeeting abstract

Generation and analysis of a highly complex γ-retroviral vector integration site dataset from human CD34+ cells using illumina next-generation sequencing

Hallwirth, C. V., Hyman, J., Garg, G., Ruan, X., Veeravalli, L., Kramer, B., Shahab, A., Ong, C. T., Liddle, C., Ranganathan, S., Russell, D. W., Wei, C-L. & Alexander, I. E., 2011, In : Journal of Gene Medicine. 13, 7-8, p. 430-431 2 p.

Research output: Contribution to journalMeeting abstract

Entry for encyclopedia/dictionary/reference book

Adaptive immune system

Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 10-11 2 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

Genome databases and browsers

Southwood, D. & Ranganathan, S., 2019, Encyclopedia of bioinformatics and computational biology: ABC of Bioinformatics. Ranganathan, S., Gribskov, M., Nakai, K. & Schönbach, C. (eds.). Amsterdam: Elsevier, Vol. 2. p. 251-256 6 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

Identification of proteins from proteomic analysis

Noor, Z., Mohamedali, A. & Ranganathan, S., 2019, Encyclopedia of bioinformatics and computational biology: ABC of Bioinformatics. Cannataro, M., Gaeta, B. & Asif Khan, M. (eds.). Amsterdam; Oxford; Cambridge: Elsevier, Vol. 3. p. 855-870 16 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

pMHC epitope

Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 1718-1719 2 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

Protocol for protein structure modelling

Jabeen, A., Mohamedali, A. & Ranganathan, S., 2019, Encyclopedia of bioinformatics and computational biology: ABC of Bioinformatics. Cannataro, M., Gaeta, B. & Asif Khan, M. (eds.). Amsterdam; Oxford; Cambridge: Elsevier, Vol. 3. p. 252-272 21 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

1 Citation (Scopus)

Quantification of proteins from proteomic analysis

Noor, Z., Adhikari, S., Ranganathan, S. & Mohamedali, A., 2019, Encyclopedia of bioinformatics and computational biology: ABC of Bioinformatics. Cannataro, M., Gaeta, B. & Asif Khan, M. (eds.). Amsterdam; Oxford; Cambridge: Elsevier, Vol. 3. p. 871-890 20 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

Structural immunoinformatics

Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 2022-2023 2 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

T cell activation

Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). Springer, Springer Nature, p. 2115-2115 1 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

T cell epitopes

Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 2118-2119 2 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

T cell signalling

Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 2119-2119 1 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

TR Germline Bias

Ranganathan, S., 2013, Encyclopedia of Systems Biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 2212-2212 1 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

TR recognition of MHC-peptide complexes

Khan, J. & Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 2212-2218 7 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

Editorial

2016 update on APBioNet's annual international conference on bioinformatics (InCoB)

Schönbach, C., Verma, C., Wee, L. J. K., Bond, P. J. & Ranganathan, S., 22 Dec 2016, In : BMC Genomics. 17, Suppl.13, p. 1-4 4 p., 1036.

Research output: Contribution to journalEditorial

Open Access
File
1 Citation (Scopus)
8 Downloads (Pure)

A bioinformatics potpourri

Schönbach, C., Li, J., Ma, L., Horton, P., Sjaugi, M. F. & Ranganathan, S., 19 Jan 2018, In : BMC Genomics. 19, Suppl 1, 6 p., 920.

Research output: Contribution to journalEditorial

Open Access
File
15 Downloads (Pure)

A hitchhiker's guide to expressed sequence tag (EST) analysis

Nagaraj, S. H., Gasser, R. B. & Ranganathan, S., Jan 2007, In : Briefings in Bioinformatics. 8, 1, p. 6-21 16 p.

Research output: Contribution to journalEditorial

193 Citations (Scopus)

Bioinformatics and systems biology research update from the 15th International Conference on Bioinformatics (InCoB2016)

Schönbach, C., Verma, C., Bond, P. J. & Ranganathan, S., 22 Dec 2016, In : BMC Bioinformatics. 17, Suppl.19, p. 1-4 4 p., 524.

Research output: Contribution to journalEditorial

Open Access
File
2 Citations (Scopus)
8 Downloads (Pure)

Bioinformatics research in the Asia Pacific: a 2007 update

Ranganathan, S., Gribskov, M. & Tan, T. W., 2008, In : BMC Bioinformatics. 9, Suppl. 1, p. 1-4 4 p., S1.

Research output: Contribution to journalEditorial

Open Access
File
5 Citations (Scopus)
2 Downloads (Pure)

Challenges of the next decade for the Asia Pacific region: 2010 International Conference in Bioinformatics (InCoB 2010)

Ranganathan, S., Schönbach, C., Nakai, K. & Tan, T. W., 2 Oct 2010, In : BMC Genomics. 11, Supplement 4, p. 1-6 6 p., S1.

Research output: Contribution to journalEditorial

8 Citations (Scopus)

Critical technologies for bioinformatics

Brusic, V. & Ranganathan, S., Jul 2008, In : Briefings in Bioinformatics. 9, 4, p. 261-262 2 p.

Research output: Contribution to journalEditorial

2 Citations (Scopus)

Editorial overview: theory and simulation: demystifying GPCRs – structure, function and drug design

Ranganathan, S. & Blundell, T. L., Apr 2019, In : Current Opinion in Structural Biology. 55, p. vi-viii 3 p.

Research output: Contribution to journalEditorial

Establishing bioinformatics research in the Asia Pacific

Ranganathan, S., Tammi, M., Gribskov, M. & Tan, T. W., 18 Dec 2006, In : BMC Bioinformatics. 7, SUPPL.5, p. 1-4 4 p., S1.

Research output: Contribution to journalEditorial

Open Access
File
7 Citations (Scopus)
2 Downloads (Pure)

Extending Asia Pacific bioinformatics into new realms in the "-omics" era

Ranganathan, S., Eisenhaber, F., Tong, J. C. & Tan, T. W., 3 Dec 2009, In : BMC Genomics. 10, SUPPL. 3, p. 1-5 5 p., S1.

Research output: Contribution to journalEditorial

Open Access
File
5 Citations (Scopus)
5 Downloads (Pure)

GIW and InCoB, two premier bioinformatics conferences in Asia with a combined 40 years of history

Schonbach, C., Horton, P., Yiu, S-M., Tan, T. W. & Ranganathan, S., 9 Dec 2015, In : BMC Genomics. 16, Supplement 12, p. 1-4 4 p., I1.

Research output: Contribution to journalEditorial

Open Access
File
3 Downloads (Pure)

InCoB2010 - 9thInternational Conference on Bioinformatics at Tokyo, Japan, September 26-28, 2010

Schönbach, C., Nakai, K., Tan, T. W. & Ranganathan, S., 15 Oct 2010, In : BMC Bioinformatics. 11, SUPPL. 7, p. 1-4 4 p., S1.

Research output: Contribution to journalEditorial

1 Citation (Scopus)

Introduction to selected papers from GIW/InCoB 2015

Horton, P., Schönbach, C., Ranganathan, S. & Yiu, S. M., 1 Oct 2015, In : Journal of Bioinformatics and Computational Biology. 13, 5, 2 p., 1502003.

Research output: Contribution to journalEditorial

The Asia-Pacific regional perspective on bioinformatics

Miyano, S. & Ranganathan, S., 2001, In : IEEE Intelligent Systems. 16, 6, p. 19-20; 61 3 p.

Research output: Contribution to journalEditorial

6 Citations (Scopus)

Towards a career in bioinformatics

Ranganathan, S., 3 Dec 2009, In : BMC Bioinformatics. 10, SUPPL. 15, p. 1-4 4 p., S1.

Research output: Contribution to journalEditorial

Open Access
File
11 Citations (Scopus)
2 Downloads (Pure)

Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference

Ranganathan, S., Schönbach, C., Kelso, J., Rost, B., Nathan, S. & Tan, T. W., 30 Nov 2011, In : BMC Bioinformatics. 12, SUPPL. 13, p. 1-4 4 p., S1.

Research output: Contribution to journalEditorial

Open Access
File
17 Citations (Scopus)
59 Downloads (Pure)
Edited Book/Anthology

Bioinformatics for immunomics

Flower, D. D. R. (ed.), Davies, M. (ed.) & Ranganathan, S. (ed.), 2010, New York: Springer, Springer Nature. 187 p. (Immunomics reviews)

Research output: Book/ReportEdited Book/Anthology

Encyclopedia of bioinformatics and computational biology

Ranganathan, S. (ed.), Gribskov, M. (ed.), Nakai, K. (ed.) & Schönbach, C. (ed.), 2019, Amsterdam; Oxford; Cambridge: Elsevier. 3346 p.

Research output: Book/ReportEdited Book/Anthology

Immunoinformatics

Schönbach, C. (ed.), Ranganathan, S. (ed.) & Brusic, V. (ed.), 2008, New York: Springer, Springer Nature. 200 p.

Research output: Book/ReportEdited Book/Anthology

2 Citations (Scopus)

Proceedings, Seventh International Conference on Bioinformatics (InCoB2008) Taipei, Taiwan. 20-23 October 2008

Ranganathan, S. (ed.), Hsu, W-L. (ed.), Yang, U-C. (ed.) & Tan, T. W. (ed.), 2008, London: Springer, Springer Nature.

Research output: Book/ReportEdited Book/Anthology