• 5474 Citations
  • 37 h-Index
1980 …2021

Research output per year

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Research Outputs

Article

SVM-based prediction of caspase substrate cleavage sites

Wee, L. J. K., Tan, T. W. & Ranganathan, S., 18 Dec 2006, In : BMC Bioinformatics. 7, SUPPL.5, p. 1-9 9 p., S14.

Research output: Contribution to journalArticle

Open Access
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50 Citations (Scopus)

Tandem duplication, circular permutation, molecular adaptation: how Solanaceae resist pests via inhibitors

Kong, L. & Ranganathan, S., 13 Feb 2008, In : BMC Bioinformatics. 9, SUPPL. 1, p. 1-15 15 p., S22.

Research output: Contribution to journalArticle

Open Access
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23 Citations (Scopus)
3 Downloads (Pure)

The force field of carbon suboxide

Murthy, A. S. N. & Ranganathan, S., 1982, In : Journal of Molecular Structure. 90, C, p. 219-226 8 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

The gene for a novel member of the whey acidic protein family encodes three four-disulfide core domains and is asynchronously expressed during lactation

Simpson, K. J., Ranganathani, S., Fisher, J. A., Janssens, P. A., Shaw, D. C. & Nicholas, K. R., 28 Jul 2000, In : Journal of Biological Chemistry. 275, 30, p. 23074-23081 8 p.

Research output: Contribution to journalArticle

60 Citations (Scopus)

The genome sequence of taurine cattle: A window to ruminant biology and evolution

Elsik, C. G., Tellam, R. L., Worley, K. C., Gibbs, R. A., Muzny, D. M., Weinstock, G. M., Adelson, D. L., Eichler, E. E., Elnitski, L., Guigó, R., Hamernik, D. L., Kappes, S. M., Lewin, H. A., Lynn, D. J., Nicholas, F. W., Reymond, A., Rijnkels, M., Skow, L. C., Zdobnov, E. M., Schook, L. & 288 others, Womack, J., Alioto, T., Antonarakis, S. E., Astashyn, A., Chappie, C. E., Chen, H. C., Chrast, J., Câmara, F., Ermolaeva, O., Henrichsen, C. N., Hlavina, W., Kapustin, Y., Kiryutin, B., Kitts, P., Kokocinski, F., Landrum, M., Maglott, D., Pruitt, K., Sapojnikov, V., Searle, S. M., Solovyev, V., Souvorov, A., Ucla, C., Wyss, C., Anzola, J. M., Gerlach, D., Elhaik, E., Graur, D., Reese, J. T., Edgar, R. C., McEwan, J. C., Payne, G. M., Raison, J. M., Junier, T., Kriventseva, E. V., Eyras, E., Plass, M., Donthu, R., Larkin, D. M., Reecy, J., Yang, M. Q., Chen, L., Cheng, Z., Chitko-McKown, C. G., Liu, G. E., Matukumalli, L. K., Song, J., Zhu, B., Bradley, D. G., Brinkman, F. S. L., Lau, L. P. L., Whiteside, M. D., Walker, A., Wheeler, T. T., Casey, T., German, J. B., Lemay, D. G., Maqbool, N. J., Molenaar, A. J., Seo, S., Stothard, P., Baldwin, C. L., Baxter, R., Brinkmeyer-Larigford, C. L., Brown, W. C., Childers, C. P., Connelley, T., Ellis, S. A., Fritz, K., Glass, E. J., Herzig, C. T. A., Livanainen, A., Lahmers, K. K., Bennett, A. K., Dickens, C. M., Gilbert, J. G. R., Hagen, D. E., Salih, H., Aerts, J., Caetano, A. R., Dalrymple, B., Garcia, J. F., Gill, C. A., Hiendleder, S. G., Memili, E., Spurlock, D., Williams, J. L., Alexander, L., Brownstein, M. J., Guan, L., Holt, R. A., Jones, S. J. M., Marra, M. A., Moore, R., Moore, S. S., Roberts, A., Taniguchi, M., Waterman, R. C., Chacko, J., Chandrabose, M. M., Cree, A., Dao, M. D., Dinh, H. H., Gabisi, R. A., Hines, S., Hume, J., Jhangiani, S. N., Joshi, V., Kovar, C. L., Lewis, L. R., Liu, Y. S., Lopez, J., Morgan, M. B., Nguyen, N. B., Okwuonu, G. O., Ruiz, S. J., Santibanez, J., Wright, R. A., Buhay, C., Ding, Y., Dugan-Rocha, S., Herdandez, J., Holder, M., Sabo, A., Egan, A., Goodell, J., Wilczek-Boney, K., Fowler, G. R., Hitchens, M. E., Lozado, R. J., Moen, C., Steffen, D., Warren, J. T., Zhang, J., Chiu, R., Schein, J. E., Durbin, K. J., Havlak, P., Jiang, H., Liu, Y., Qin, X., Ren, Y., Shen, Y., Song, H., Bell, S. N., Davis, C., Johnson, A. J., Lee, S., Nazareth, L. V., Patel, B. M., Pu, L. L., Vattathil, S., Williams, R. L., Curry, S., Hamilton, C., Sodergren, E., Wheeler, D. A., Barris, W., Bennett, G. L., Eggen, A., Green, R. D., Harhay, G. P., Hobbs, M., Jann, O., Keele, J. W., Kent, M. P., Lien, S., McKay, S. D., McWilliam, S., Ratnakumar, A., Schnabel, R. D., Smith, T., Snelling, W. M., Sonstegard, T. S., Stone, R. T., Sugimoto, Y., Takasuga, A., Taylor, J. F., Van Tassell, C. P., MacNeil, M. D., Abatepaulo, A. R. R., Abbey, C. A., Ahola, V., Almeida, L. G., Amadio, A. F., Anatriello, E., Bahadue, S. M., Biase, F. H., Boldt, C. R., Carroll, J. A., Carvalho, W. A., Cervelatti, E. P., Chacko, E., Chapin, J. E., Cheng, Y., Choi, J., Colley, A. J., DeCampos, T. A., De Donato, M., De Miranda Santos, I. K. F., De Oliveira, C. J. F., Deobald, H., Devinoy, E., Donohue, K. E., Dove, P., Eberlein, A., Fitzsimmons, C. J., Franzin, A. M., Garcia, G. R., Genini, S., Gladney, C. J., Grant, J. R., Greaser, M. L., Green, J. A., Hadsell, D. L., Hakimov, H. A., Halgren, R., Harrow, J. L., Hart, E. A., Hastings, N., Hernandez, M., Hu, Z. L., Iivanainen, A., Ingham, A., Iso-Touru, T., Jamis, C., Jensen, K., Kapetis, D., Kerr, T., Khalil, S. S., Khatib, H., Kolbehdari, D., Kumar, C. G., Kumar, D., Leach, R., Lee, J. C. M., Li, C., Logan, K. M., Malinverni, R., Marques, E., Martin, W. F., Martins, N. F., Maruyama, S. R., Mazza, R., McLean, K. L., Medrano, J. F., Moreno, B. T., More, D. D., Muntean, C. T., Nandakumar, H. P., Nogueira, M. F. G., Olsaker, I., Pant, S. D., Panzitta, F., Pastor, R. C. P., Poli, M. A., Poslusny, N., Rachagani, S., Ranganathan, S., Razpet, A., Riggs, P. K., Rincón, G., Rodriguez-Osorio, N., Rodriguez-Zas, S. L., Romero, N. E., Rosenwald, A., Sando, L., Schmutz, S. M., Shen, L., Sherman, L., Southey, B. R., Lutzow, Y. S., Sweedler, J. V., Tammen, I., Telugu, B. P. V. L., Urbanski, J. M., Utsunomiya, Y. T., Verschoor, C. P., Waardenberg, A. J., Wang, Z., Ward, R., WeiKard, R., Welsh, T. H., White, S. N., Wilming, L. G., Wunderlich, K. R., Yang, J. & Zhao, F. Q., 24 Apr 2009, In : Science. 324, 5926, p. 522-528 7 p.

Research output: Contribution to journalArticle

774 Citations (Scopus)

The gramicidin A channel: comparison of the energy profiles of Na+, K+ and Cs+. Influence of the flexibility of the ethanolamine end chain on the profiles

Etchebest, C., Ranganathan, S. & Pullman, A., 6 Aug 1984, In : FEBS Letters. 173, 2, p. 301-306 6 p.

Research output: Contribution to journalArticle

31 Citations (Scopus)

The gramicidin A channel: theoretical energy profile computed for single occupancy by a divalent cation, Ca2+

Etchebest, C., Pullman, A. & Ranganathan, S., 8 Aug 1985, In : BBA - Biomembranes. 818, 1, p. 23-30 8 p.

Research output: Contribution to journalArticle

15 Citations (Scopus)

The hand, foot and mouth disease virus capsid: sequence analysis and prediction of antigenic sites from homology modelling.

Ranganathan, S., Singh, S., Poh, C. L. & Chow, V. T., 2002, In : Appl Bioinformatics. 1, 1, p. 43-52 10 p.

Research output: Contribution to journalArticle

29 Citations (Scopus)

The integrin αLβ2 hybrid domain serves as a link for the propagation of activation signal from its stalk regions to the I-like domain

Tng, E., Tan, S. M., Ranganathan, S., Cheng, M. & Law, S. K. A., 24 Dec 2004, In : Journal of Biological Chemistry. 279, 52, p. 54334-54339 6 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)

The S-Star Trial Bioinformatics course: An on-line learning success

Lim, Y. P., Höög, J. O., Gardner, P., Ranganathan, S., Andersson, S., Subbiah, S., Tan, T. W., Hide, W. & Weiss, A. S., Jan 2003, In : Biochemistry and Molecular Biology Education. 31, 1, p. 20-23 4 p.

Research output: Contribution to journalArticle

13 Citations (Scopus)

The transcriptome analysis of strongyloides stercoralis L3i larvae reveals targets for intervention in a neglected disease

Marcilla, A., Garg, G., Bernal, D., Ranganathan, S., Forment, J., Ortiz, J., Muñoz-Antolí, C., Dominguez, M. V., Pedrola, L., Martinez-Blanch, J., Sotillo, J., Trelis, M., Toledo, R. & Esteban, J. G., Feb 2012, In : PLoS Neglected Tropical Diseases. 6, 2, p. 1-9 9 p., e1513.

Research output: Contribution to journalArticle

Open Access
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22 Citations (Scopus)
25 Downloads (Pure)

The transcriptome of Echinostoma caproni adults: Further characterization of the secretome and identification of new potential drug targets

Garg, G., Bernal, D., Trelis, M., Forment, J., Ortiz, J., Valero, M. L., Pedrola, L., Martinez-Blanch, J., Esteban, J. G., Ranganathan, S., Toledo, R. & Marcilla, A., 26 Aug 2013, In : Journal of Proteomics. 89, p. 202-214 13 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)
3 Citations (Scopus)

The whey acidic protein family: A new signature motif and three-dimensional structure by comparative modeling

Ranganathan, S., Simpson, K. J., Shaw, D. C. & Nicholas, K. R., Apr 1999, In : Journal of Molecular Graphics and Modelling. 17, 2, p. 106-113 8 p.

Research output: Contribution to journalArticle

120 Citations (Scopus)

Towards BioDBcore: a community-defined information specification for biological databases

Gaudet, P., Bairoch, A., Field, D., Sansone, S. A., Taylor, C., Attwood, T. K., Bateman, A., Blake, J. A., Bult, C. J., Cherry, J. M., Chisholm, R. L., Cochrane, G., Cook, C. E., Eppig, J. T., Galperin, M. Y., Gentleman, R., Goble, C. A., Gojobori, T., Hancock, J. M., Howe, D. G. & 18 others, Imanishi, T., Kelso, J., Landsman, D., Lewis, S. E., Karsch-Mizrachi, I., Orchard, S., Ouellette, B. F. F., Ranganathan, S., Richardson, L., Rocca-Serra, P., Schofield, P. N., Smedley, D., Southan, C., Tan, T. W., Tatusova, T., Whetzel, P. L., White, O. & Yamasaki, C., Jan 2011, In : Nucleic Acids Research. 39, SUPPL. 1, p. D7-D10 4 p.

Research output: Contribution to journalArticle

Open Access
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27 Citations (Scopus)
3 Downloads (Pure)

Towards BioDBcore: A community-defined information specification for biological databases

Gaudet, P., Bairoch, A., Field, D., Sansone, S. A., Taylor, C., Attwood, T. K., Bateman, A., Blake, J. A., Bult, C. J., Cherry, J. M., Chisholm, R. L., Cochrane, G., Cook, C. E., Eppig, J. T., Galperin, M. Y., Gentleman, R., Goble, C. A., Gojobori, T., Hancock, J. M., Howe, D. G. & 18 others, Imanishi, T., Kelso, J., Landsman, D., Lewis, S. E., Mizrachi, I. K., Orchard, S., Ouellette, B. F. F., Ranganathan, S., Richardson, L., Rocca-Serra, P., Schofield, P. N., Smedley, D., Southan, C., Tan, T. W., Tatusova, T., Whetzel, P. L., White, O. & Yamasaki, C., 2011, In : Database. 2011, p. 1-6 6 p., baq027.

Research output: Contribution to journalArticle

16 Citations (Scopus)

Transcriptional changes in the hookworm, Ancylostoma caninum, during the transition from a free-living to a parasitic larva

Datu, B. J. D., Gasser, R. B., Nagaraj, S. H., Ong, E. K., O'Donoghue, P., McInnes, R., Ranganathan, S. & Loukas, A., Jan 2008, In : PLoS Neglected Tropical Diseases. 2, 1, p. 1-15 15 p., e130.

Research output: Contribution to journalArticle

66 Citations (Scopus)

Transcriptome analysis reveals pathogenicity and evolutionary history of the pathogenic oomycete Pythium insidiosum

Krajaejun, T., Lerksuthirat, T., Garg, G., Lowhnoo, T., Yingyong, W., Khositnithikul, R., Tangphatsornruang, S., Suriyaphol, P., Ranganathan, S. & Sullivan, T. D., 2014, In : Fungal Biology. 118, 7, p. 640-653 14 p.

Research output: Contribution to journalArticle

17 Citations (Scopus)

Understanding TR binding to pMHC complexes: how does a TR scan many pMHC complexes yet preferentially bind to one

Khan, J. M. & Ranganathan, S., 2011, In : PLoS ONE. 6, 2, p. 1-12 12 p., e17194.

Research output: Contribution to journalArticle

Open Access
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8 Citations (Scopus)
10 Downloads (Pure)

Unlocking the puzzling biology of the Black Périgord truffle Tuber melanosporum

Islam, M. T., Mohamedali, A., Garg, G., Khan, J. M., Gorse, A. D., Parsons, J., Marshall, P., Ranganathan, S. & Baker, M. S., 6 Dec 2013, In : Journal of Proteome Research. 12, 12, p. 5349-5356 8 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)

Whole-genome sequence of Schistosoma haematobium

Young, N. D., Jex, A. R., Li, B., Liu, S., Yang, L., Xiong, Z., Li, Y., Cantacessi, C., Hall, R. S., Xu, X., Chen, F., Wu, X., Zerlotini, A., Oliveira, G., Hofmann, A., Zhang, G., Fang, X., Kang, Y., Campbell, B. E., Loukas, A. & 8 others, Ranganathan, S., Rollinson, D., Rinaldi, G., Brindley, P. J., Yang, H., Wang, J., Wang, J. & Gasser, R. B., Feb 2012, In : Nature Genetics. 44, 2, p. 221-225 5 p.

Research output: Contribution to journalArticle

276 Citations (Scopus)

XdomView: Protein domain and exon position visualization

Vivek, G., Tan, T. W. & Ranganathan, S., 1 Jan 2003, In : Bioinformatics. 19, 1, p. 159-160 2 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Xpro: database of eukaryotic protein-encoding genes

Gopalan, V., Tan, T. W., Lee, B. T. K. & Ranganathan, S., 1 Jan 2004, In : Nucleic Acids Research. 32, Database issue, p. D59-D63 5 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)

κ-Hefutoxin1, a novel toxin from the Scorpion Heterometrus fulvipes with unique structure and function: importance of the functional diad in potassium channel selectivity

Srinivasan, K. N., Sivaraja, V., Huys, I., Sasaki, T., Cheng, B., Kumar, T. K. S., Sato, K., Tytgat, J., Yu, C., San, B. C. C., Ranganathan, S., Bowie, H. J., Kini, R. M. & Gopalakrishnakone, P., 16 Aug 2002, In : Journal of Biological Chemistry. 277, 33, p. 30040-30047 8 p.

Research output: Contribution to journalArticle

109 Citations (Scopus)
Abstract

Aligning mRNA/EST data to geneomic sequences: a novel approach

Ranganathan, S., 2004, p. 24-24. 1 p.

Research output: Contribution to conferenceAbstract

Alternative Splicing: Bridging the Gap Between the Genome and the Transcriptome

Ranganathan, S., 2004, p. 51-51. 1 p.

Research output: Contribution to conferenceAbstract

Chemoinformatics module for CMKb, a custromary medicinal database

Khanna, V., Gaikwad, J. A., Jamie, J. F. & Ranganathan, S., 2008.

Research output: Contribution to conferenceAbstract

Classification of BNIP2-Cdc42GAP homology domain family

Tan, T. W., Tan, K. H., Ranganathan, S. & Low, B. C., 2004, p. 14-14. 1 p.

Research output: Contribution to conferenceAbstract

Combating medicinal plant extinction and indigenous culture loss - an Australian Model

Gaikwad, J., Jamie, J. F., Vemulpad, S., Kohen, J. & Ranganathan, S., 2009.

Research output: Contribution to conferenceAbstract

Drosophila melanogaster Exon Database

Lee, B. T. K., Ranganathan, S. & Tan, T. W., 2004, p. 14-14. 1 p.

Research output: Contribution to conferenceAbstract

Flexible Docking of Pemphigus Vulgaris Peptides to MHC Class II DR and DQ Alleles

Tong, J. C., Ranganathan, S., Bramson, J., Kanduc, D. & Sinha, A., 2004, p. 40-40. 1 p.

Research output: Contribution to conferenceAbstract

Integration of protein Interaction and Metabolic Data for Subcellular Localization Prediction

Cootes, A., Nevalainen, H. K. M. & Ranganathan, S., 2008, p. P98-P98. 1 p.

Research output: Contribution to conferenceAbstract

Mapping Alternate splice variants onto protein structures using biocomputing methods

Ranganathan, S., Gopalan, V. & Madhwacharyula, C. L., 2004, p. 3-3. 1 p.

Research output: Contribution to conferenceAbstract

Representing Transcript Diversity in the Drosophila Melanogaster Genome using Splicing Graphs

Ranganathan, S., Lee, B. T. K. & Tan, T. W., 2004, p. 30-30. 1 p.

Research output: Contribution to conferenceAbstract

SigPep: A Database for Signal Peptides

Choo, K. H., Ranganathan, S. & Tan, T. W., 2004, p. 12-12. 1 p.

Research output: Contribution to conferenceAbstract

Wormsplice: An alternative splicing database of C. Elegans using splicing graphs

Bollina, D. & Ranganathan, S., 2004, p. 7-7. 1 p.

Research output: Contribution to conferenceAbstract