• 5410 Citations
  • 37 h-Index
1980 …2021

Research output per year

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Research Outputs

2014

InCoB2014: bioinformatics to tackle the data to knowledge challenge

Ranganathan, S., Tan, T. W. & Schönbach, C., 8 Dec 2014, In : BMC Bioinformatics. 15, 16, p. 1-3 3 p., I1.

Research output: Contribution to journalArticle

Open Access
File
5 Downloads (Pure)

InCoB2014: mining biological data from genomics for transforming industry and health

Schönbach, C., Tan, T. W. & Ranganathan, S., 8 Dec 2014, In : BMC Genomics. 15, S9, p. 1-4 4 p., I1.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
6 Downloads (Pure)

Protannotator: A semiautomated pipeline for chromosome-wise functional annotation of the "missing" human proteome

Islam, M. T., Garg, G., Hancock, W. S., Risk, B. A., Baker, M. S. & Ranganathan, S., 3 Jan 2014, In : Journal of Proteome Research. 13, 1, p. 76-83 8 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)

Protein-protein interactions and prediction: A comprehensive overview

Sowmya, G. & Ranganathan, S., 2014, In : Protein and peptide letters. 21, 8, p. 779-789 11 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)

Structure-based clustering of major histocompatibility complex (MHC) proteins for broad-based T-cell vaccine design

Tong, J. C., Tan, T. W. & Ranganathan, S., 2014, Immunoinformatics. De, R. K. & Tomar, N. (eds.). 2nd ed. New York: Humana Press, p. 503-511 9 p. (Methods in Molecular Biology; vol. 1184).

Research output: Chapter in Book/Report/Conference proceedingChapter

Transcriptome analysis reveals pathogenicity and evolutionary history of the pathogenic oomycete Pythium insidiosum

Krajaejun, T., Lerksuthirat, T., Garg, G., Lowhnoo, T., Yingyong, W., Khositnithikul, R., Tangphatsornruang, S., Suriyaphol, P., Ranganathan, S. & Sullivan, T. D., 2014, In : Fungal Biology. 118, 7, p. 640-653 14 p.

Research output: Contribution to journalArticle

17 Citations (Scopus)
2013

Adaptive immune system

Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 10-11 2 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

Analysis and comparison of γ-retroviral vector integration behaviour in human CD34+cells transduced under conditions employed in the French and English SCID-X1 clinical trials

Hallwirth, C. V., Garg, G., Malani, N. V., Peters, T., Hetherington, N., Hyman, J., Kramer, B., Ginn, S. L., Ruan, X., Ranganathan, S., Buckley, M., Bushman, F. D. & Alexander, I. E., Aug 2013, In : Journal of Gene Medicine. 15, 8-9, p. 315-316 2 p.

Research output: Contribution to journalMeeting abstract

APBioNet-transforming bioinformatics in the Asia-Pacific Region

Khan, A. M., Tan, T. W., Schönbach, C. & Ranganathan, S., 31 Oct 2013, In : PLoS Computational Biology. 9, 10, p. 1-3 3 p., e1003317.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
18 Downloads (Pure)

Computer-Aided Vaccine Design

Tong, J. C. & Ranganathan, S., 2013, Oxford: Elsevier. 135 p.

Research output: Book/ReportBook

1 Citation (Scopus)

Functional annotation of the human chromosome 7 "missing" proteins: A bioinformatics approach

Ranganathan, S., Khan, J. M., Garg, G. & Baker, M. S., 2013, In : Journal of Proteome Research. 12, 6, p. 2504-2510 7 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)

High-throughput functional annotation and data mining of fungal genomes to identify therapeutic targets

Garg, G. & Ranganathan, S., 2013, Laboratory protocols in fungal biology: current methods on fungal biology. Gupta, V. K., Tuohy, M. G., Ayyachamy, M., Turner, K. M. & O'Donovan, A. (eds.). New York: Springer, Springer Nature, p. 559-564 6 p. (Fungal biology).

Research output: Chapter in Book/Report/Conference proceedingChapter

Identification of ovarian cancer associated genes using an integrated approach in a Boolean framework

Kumar, G., Breen, E. J. & Ranganathan, S., 6 Feb 2013, In : BMC Systems Biology. 7, p. 1-14 14 p., 12.

Research output: Contribution to journalArticle

Open Access
File
8 Citations (Scopus)
4 Downloads (Pure)

InCoB2013 introduces Systems Biology as a major conference theme

Schönbach, C., Shen, B., Tan, T. W. & Ranganathan, S., 4 Nov 2013, In : BMC Systems Biology. 7, Supplement 3, p. 1-3 3 p.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
4 Downloads (Pure)

pMHC epitope

Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 1718-1719 2 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

Simple re-instantiation of small databases using cloud computing

Tan, T. W., Xie, C., De Silva, M., Lim, K. S., Patro, C. P. K., Lim, S. J., Govindarajan, K. R., Tong, J. C., Choo, K. H., Ranganathan, S. & Khan, A. M., 2013, In : BMC Genomics. 14, Suppl 5, p. 1-4 4 p., S13.

Research output: Contribution to journalConference paper

Open Access
File
2 Citations (Scopus)
3 Downloads (Pure)

Structural immunoinformatics

Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 2022-2023 2 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

T cell activation

Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). Springer, Springer Nature, p. 2115-2115 1 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

T cell epitopes

Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 2118-2119 2 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

T cell signalling

Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 2119-2119 1 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

The transcriptome of Echinostoma caproni adults: Further characterization of the secretome and identification of new potential drug targets

Garg, G., Bernal, D., Trelis, M., Forment, J., Ortiz, J., Valero, M. L., Pedrola, L., Martinez-Blanch, J., Esteban, J. G., Ranganathan, S., Toledo, R. & Marcilla, A., 26 Aug 2013, In : Journal of Proteomics. 89, p. 202-214 13 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

TR Germline Bias

Ranganathan, S., 2013, Encyclopedia of Systems Biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 2212-2212 1 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

TR recognition of MHC-peptide complexes

Khan, J. & Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 2212-2218 7 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference book

Unlocking the puzzling biology of the Black Périgord truffle Tuber melanosporum

Islam, M. T., Mohamedali, A., Garg, G., Khan, J. M., Gorse, A. D., Parsons, J., Marshall, P., Ranganathan, S. & Baker, M. S., 6 Dec 2013, In : Journal of Proteome Research. 12, 12, p. 5349-5356 8 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)
2012

Advances in translational bioinformatics and population genomics in the Asia-Pacific

Ranganathan, S., Tongsima, S., Chan, J., Tan, T. W. & Schönbach, C., 2012, In : BMC Genomics. 13, Suppl 7, p. 1-4 4 p., S1.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
2 Downloads (Pure)

An analysis of the transcriptome of Teladorsagia circumcincta: its biological and biotechnological implications

Menon, R., Gasser, R. B., Mitreva, M. & Ranganathan, S., 2012, In : BMC Genomics. 13, Suppl 7, p. 1-17 17 p., S10.

Research output: Contribution to journalArticle

13 Citations (Scopus)

An ethnobotanical study of medicinal plants used by the Yaegl Aboriginal community in northern New South Wales, Australia

Packer, J., Brouwer, N., Harrington, D., Gaikwad, J., Heron, R., Yaegl Community Elders, C. E., Ranganathan, S., Vemulpad, S. & Jamie, J., 6 Jan 2012, In : Journal of Ethnopharmacology. 139, 1, p. 244-255 12 p.

Research output: Contribution to journalArticle

Open Access
File
30 Citations (Scopus)
1330 Downloads (Pure)

Bioinformatics meets parasitology

Cantacessi, C., Campbell, B. E., Jex, A. R., Young, N. D., Hall, R. S., Ranganathan, S. & Gasser, R. B., May 2012, In : Parasite Immunology. 34, 5, p. 265-275 11 p.

Research output: Contribution to journalReview article

19 Citations (Scopus)

Helminth secretome database (HSD): a collection of helminth excretory/secretory proteins predicted from expressed sequence tags (ESTs)

Garg, G. & Ranganathan, S., 2012, In : BMC Genomics. 13, p. 1-11 11 p., S8.

Research output: Contribution to journalConference paper

Open Access
File
25 Citations (Scopus)
31 Downloads (Pure)

InCoB2012 Conference: from biological data to knowledge to technological breakthroughs

Schönbach, C., Tongsima, S., Chan, J., Brusic, V., Tan, T. W. & Ranganathan, S., 2012, In : BMC Bioinformatics. 13, Suppl 17, p. 1-6 6 p., S1.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)

In silico prediction of immunogenic T cell epitopes for HLA-DQ8

Khan, J. M., Kumar, G. & Ranganathan, S., 2012, In : Immunome Research. 8, 1, p. 1-9 9 p.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
9 Downloads (Pure)

Medicinal plants of New South Wales, Australia

Packer, J., Gaikwad, J., Harrington, D., Ranganathan, S., Jamie, J. & Vemulpad, S., 2012, Genetic Resources, chromosome engineering, and crop improvement: Volume 6 : medicinal plants. Singh, R. J. (ed.). Boca Raton ; London ; New York: CRC Press, Taylor & Francis Group, Vol. 6. p. 259-296 38 p. (Genetic Resources, chromosome engineering, and crop improvement series).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)

The transcriptome analysis of strongyloides stercoralis L3i larvae reveals targets for intervention in a neglected disease

Marcilla, A., Garg, G., Bernal, D., Ranganathan, S., Forment, J., Ortiz, J., Muñoz-Antolí, C., Dominguez, M. V., Pedrola, L., Martinez-Blanch, J., Sotillo, J., Trelis, M., Toledo, R. & Esteban, J. G., Feb 2012, In : PLoS Neglected Tropical Diseases. 6, 2, p. 1-9 9 p., e1513.

Research output: Contribution to journalArticle

Open Access
File
22 Citations (Scopus)
23 Downloads (Pure)

TranSeqAnnotator: large-scale analysis of transcriptomic data.

Menon, R., Garg, G., Gasser, R. B. & Ranganathan, S., 2012, In : BMC Bioinformatics. 13, Suppl 17, p. 1-7 7 p., S24.

Research output: Contribution to journalConference paper

3 Citations (Scopus)

Whole-genome sequence of Schistosoma haematobium

Young, N. D., Jex, A. R., Li, B., Liu, S., Yang, L., Xiong, Z., Li, Y., Cantacessi, C., Hall, R. S., Xu, X., Chen, F., Wu, X., Zerlotini, A., Oliveira, G., Hofmann, A., Zhang, G., Fang, X., Kang, Y., Campbell, B. E., Loukas, A. & 8 others, Ranganathan, S., Rollinson, D., Rinaldi, G., Brindley, P. J., Yang, H., Wang, J., Wang, J. & Gasser, R. B., Feb 2012, In : Nature Genetics. 44, 2, p. 221-225 5 p.

Research output: Contribution to journalArticle

273 Citations (Scopus)
2011

A comparative structural bioinformatics analysis of inherited mutations in b-D-Mannosidase across multiple species reveals a genotype-phenotype correlation

Huynh, T., Khan, J. M. & Ranganathan, S., 2011, 10th Int. Conference on Bioinformatics - 1st ISCB Asia Joint Conference 2011, InCoB 2011/ISCB-Asia 2011: Computational Biology - Proceedings from Asia Pacific Bioinformatics Network (APBioNet). Schoenbach, C., Nathan, S., Tan, T. W. & Ranganathan, S. (eds.). United Kingdom: Springer, Springer Nature, Vol. 12, Suppl. 3. p. 1-13 13 p. S22

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contribution

9 Citations (Scopus)

Ascaris suum draft genome

Jex, A. R., Liu, S., Li, B., Young, N. D., Hall, R. S., Li, Y., Yang, L., Zeng, N., Xu, X., Xiong, Z., Chen, F., Wu, X., Zhang, G., Fang, X., Kang, Y., Anderson, G. A., Harris, T. W., Campbell, B. E., Vlaminck, J., Wang, T. & 10 others, Cantacessi, C., Schwarz, E. M., Ranganathan, S., Geldhof, P., Nejsum, P., Sternberg, P. W., Yang, H., Wang, J., Wang, J. & Gasser, R. B., 24 Nov 2011, In : Nature. 479, 7374, p. 529-533 5 p.

Research output: Contribution to journalArticle

179 Citations (Scopus)

Combining ethnobotany and informatics to discover knowledge from data

Gaikwad, J., Wilson, K., Kohen, J., Vemulpad, S., Jamie, J. & Ranganathan, S., 2011, Ethnomedicinal plants: revitalization of traditional knowledge of herbs. Rai, M., Acharya, D. & Ríos, J. L. (eds.). 1st ed. Enfield, NH: Science Publishers, p. 444-457 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Deep insights into Dictyocaulus viviparus transcriptomes provides unique prospects for new drug targets and disease intervention

Cantacessi, C., Gasser, R. B., Strube, C., Schnieder, T., Jex, A. R., Hall, R. S., Campbell, B. E., Young, N. D., Ranganathan, S., Sternberg, P. W. & Mitreva, M., May 2011, In : Biotechnology Advances. 29, 3, p. 261-271 11 p.

Research output: Contribution to journalReview article

24 Citations (Scopus)
17 Citations (Scopus)

Generation and analysis of a highly complex γ-retroviral vector integration site dataset from human CD34+ cells using illumina next-generation sequencing

Hallwirth, C. V., Hyman, J., Garg, G., Ruan, X., Veeravalli, L., Kramer, B., Shahab, A., Ong, C. T., Liddle, C., Ranganathan, S., Russell, D. W., Wei, C-L. & Alexander, I. E., 2011, In : Journal of Gene Medicine. 13, 7-8, p. 430-431 2 p.

Research output: Contribution to journalMeeting abstract

Graphs in bioinformatics

Chacko, E. & Ranganathan, S., 2011, Algorithms in computational molecular biology: Techniques, approaches and applications. Elloumi, M. & Zomaya, A. Y. (eds.). Oxford: John Wiley & Sons, p. 192-219 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

InCoB celebrates its tenth anniversary as first joint conference with ISCB-Asia

Schönbach, C., Tan, T. W., Kelso, J., Rost, B., Nathan, S. & Ranganathan, S., 30 Nov 2011, In : BMC Genomics. 12, 3, p. 1-4 4 p., S1.

Research output: Contribution to journalArticle

Open Access
File
3 Citations (Scopus)

In silico approach to screen compounds active against parasitic nematodes of major socio-economic importance

Khanna, V. & Ranganathan, S., 30 Nov 2011, In : BMC Bioinformatics. 12, Suppl 13, p. 1-12 12 p., S25.

Research output: Contribution to journalConference paper

8 Citations (Scopus)

In silico methods for the analysis of metabolites and drug molecules

Khanna, V. & Ranganathan, S., 2011, Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications. Elloumi, M. & Zomaya, A. Y. (eds.). Hoboken, NJ: John Wiley & Sons, p. 361-381 21 p. (Bioinformatics: Computational Techniques and Engineering).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

In silico secretome analysis approach for next generation sequencing transcriptomic data

Garg, G. & Ranganathan, S., 2011, 10th International Conference on Bioinformatics. First ISCB Asia Joint Conference 2011 (InCoB/ISCB-Asia 2011): Computational Biology. Schoenbach, C., Nathan, S., Tan, T. W. & Ranganathan, S. (eds.). Piscataway, N.J.: Institute of Electrical and Electronics Engineers (IEEE), Vol. 12, Suppl. 3. p. 1-10 10 p. S14

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contribution

25 Citations (Scopus)

Molecular similarity and diversity approaches in chemoinformatics

Khanna, V. & Ranganathan, S., Feb 2011, In : Drug Development Research. 72, 1, p. 74-84 11 p.

Research output: Contribution to journalReview article

10 Citations (Scopus)

MPID-T2: a database for sequence-structure-function analyses of pMHC and TR/pMHC structures

Khan, J. M., Cheruku, H. R., Tong, J. C. & Ranganathan, S., Apr 2011, In : Bioinformatics. 27, 8, p. 1192-1193 2 p., btr104.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Structural diversity of biologically interesting datasets: A scaffold analysis approach

Khanna, V. & Ranganathan, S., Aug 2011, In : Journal of Cheminformatics. 3, p. 1-14 14 p., 30.

Research output: Contribution to journalArticle

23 Citations (Scopus)

Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference

Ranganathan, S., Schönbach, C., Kelso, J., Rost, B., Nathan, S. & Tan, T. W., 30 Nov 2011, In : BMC Bioinformatics. 12, SUPPL. 13, p. 1-4 4 p., S1.

Research output: Contribution to journalEditorial

Open Access
File
17 Citations (Scopus)
55 Downloads (Pure)