• 5248 Citations
  • 37 h-Index
1980 …2021
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Research Outputs 1980 2019

2010

A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing

Cantacessi, C., Jex, A. R., Hall, R. S., Young, N. D., Campbell, B. E., Joachim, A., Nolan, M. J., Abubucker, S., Sternberg, P. W., Ranganathan, S., Mitreva, M. & Gasser, R. B., 1 Sep 2010, In : Nucleic acids research. 38, 17, p. e171 1 p.

Research output: Contribution to journalArticleResearchpeer-review

Workflow
Computational Biology
Oesophagostomum
Research Personnel
Boidae

Bioinformatics for immunomics

Flower, D. D. R. (ed.), Davies, M. (ed.) & Ranganathan, S. (ed.), 2010, New York: Springer, Springer Nature. 187 p. (Immunomics reviews)

Research output: Book/ReportEdited Book/AnthologyResearch

medical research
biology

Biomarker information extraction tool (BIET) development using natural language processing and machine learning

Islam, M. T., Shaikh, M., Nayak, A. & Ranganathan, S., 2010, ICWET 2010 - International Conference and Workshop on Emerging Trends in Technology 2010, Conference Proceedings. New York: ACM, p. 121-126 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearchpeer-review

Biomarkers
Learning systems
Semantics
Processing
Classifiers

Challenges of the next decade for the Asia Pacific region: 2010 International Conference in Bioinformatics (InCoB 2010)

Ranganathan, S., Schönbach, C., Nakai, K. & Tan, T. W., 2 Oct 2010, In : BMC Genomics. 11, Supplement 4, p. 1-6 6 p., S1.

Research output: Contribution to journalEditorialResearch

Computational Biology
Research
Translational Medical Research
Manuscripts
Tokyo

Extracting biomarker information applying natural language processing and machine learning

Islam, M. T., Shaikh, M., Nayak, A. & Ranganathan, S., 2010, 2010 4th International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2010. Piscataway, NJ: Institute of Electrical and Electronics Engineers (IEEE), p. 1-4 4 p. 5514717

Research output: Chapter in Book/Report/Conference proceedingConference proceeding contributionResearchpeer-review

Open Access
File
Natural Language Processing
Biomarkers
Learning systems
Processing
Information Storage and Retrieval

First transcriptomic analysis of the economically important parasitic nematode, Trichostrongylus colubriformis, using a next-generation sequencing approach

Cantacessi, C., Mitreva, M., Campbell, B. E., Hall, R. S., Young, N. D., Jex, A. R., Ranganathan, S. & Gasser, R. B., Dec 2010, In : Infection, Genetics and Evolution. 10, 8, p. 1199-1207 9 p.

Research output: Contribution to journalArticleResearchpeer-review

Trichostrongylus
animal parasitic nematodes
Trichostrongylus colubriformis
Caenorhabditis elegans
transcriptomics

InCoB2010 - 9thInternational Conference on Bioinformatics at Tokyo, Japan, September 26-28, 2010

Schönbach, C., Nakai, K., Tan, T. W. & Ranganathan, S., 15 Oct 2010, In : BMC Bioinformatics. 11, SUPPL. 7, p. 1-4 4 p., S1.

Research output: Contribution to journalEditorialResearch

Tokyo
Bioinformatics
Computational Biology
Japan
bioinformatics

Massively parallel sequencing and analysis of the Necator americanus transcriptome

Cantacessi, C., Mitreva, M., Jex, A. R., Young, N. D., Campbell, B. E., Hall, R. S., Doyle, M. A., Ralph, S. A., Rabelo, E. M., Ranganathan, S., Sternberg, P. W., Loukas, A. & Gasser, R. B., May 2010, In : PLoS Neglected Tropical Diseases. 4, 5, p. 1-11 11 p., e684.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Necator americanus
Ancylostomatoidea
High-Throughput Nucleotide Sequencing
Transcriptome
Ancylostoma

Meeting report from the second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop

Kettner, C., Field, D., Sansone, S. A., Taylor, C., Aerts, J., Binns, N., Blake, A., Britten, C. M., Marco, A., Fostel, J., Gaudet, P., González-Beltrán, A., Hardy, N., Hellemans, J., Hermjakob, H., Juty, N., Leebens-Mack, J., Maguire, E., Neumann, S., Orchard, S. & 9 othersParkinson, H., Piel, W., Ranganathan, S., Rocca-Serra, P., Santarsiero, A., Shotton, D., Sterk, P., Untergasser, A. & Whetzel, P. L., 31 Dec 2010, In : Standards in Genomic Sciences. 3, 3, p. 259-266 8 p.

Research output: Contribution to journalOther journal contributionResearch

Open Access
File
Checklist
Education
Workflow
Practice Guidelines
Germany

Network analysis of human protein location

Kumar, G. & Ranganathan, S., 2010, In : BMC Bioinformatics. 11 Suppl 7, S9, p. 1-15 15 p., S9.

Research output: Contribution to journalConference paperResearchpeer-review

Network Analysis
Electric network analysis
Proteins
Protein
Protein Interaction Networks

PDOCK: a new technique for rapid and accurate docking of peptide ligands to Major Histocompatibility Complexes

Khan, J. M. & Ranganathan, S., 2010, In : Immunome Research. 6, SUPPL. 1, p. 1-16 16 p., S2.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Docking
Major Histocompatibility Complex
Peptides
Ligands
Epitopes

Structural immunoinformatics: understanding MHC-Peptide-TR binding

Khan, J. M., Tong, J. C. & Ranganathan, S., 2010, Bioinformatics for immunomics. Flower, D. R., Davies, M. N. & Ranganathan, S. (eds.). New York: Springer, Springer Nature, p. 77-93 17 p. (Immunomics reviews; vol. 3).

Research output: Chapter in Book/Report/Conference proceedingChapterResearchpeer-review

2009

A comprehensive assessment of N-terminal signal peptides prediction methods

Choo, K. H., Tan, T. W. & Ranganathan, S., 3 Dec 2009, In : BMC Bioinformatics. 10, SUPPL. 15, p. 1-12 12 p., S2.

Research output: Contribution to journalArticleResearchpeer-review

Protein Sorting Signals
Peptides
Prediction
Proteins
Protein

Advanced in silico analysis of expressed sequence tag (EST) data for parasitic nematodes of major socio-economic importance - Fundamental insights toward biotechnological outcomes

Ranganathan, S., Menon, R. & Gasser, R. B., Jul 2009, In : Biotechnology Advances. 27, 4, p. 439-448 10 p.

Research output: Contribution to journalReview articleResearchpeer-review

Expressed Sequence Tags
Computer Simulation
Genes
Economics
Genome

A multi-factor model for caspase degradome prediction

Wee, L. J. K., Tong, J. C., Tan, T. W. & Ranganathan, S., 3 Dec 2009, In : BMC Genomics. 10, SUPPL. 3, p. 1-12 12 p., S6.

Research output: Contribution to journalArticleResearchpeer-review

caspases
Caspases
prediction
Substrates
Cell death

A multi-species comparative structural bioinformatics analysis of inherited mutations in α-D-mannosidase reveals strong genotype-phenotype correlation

Khan, J. M. & Ranganathan, S., 3 Dec 2009, In : BMC Genomics. 10, SUPPL. 3, p. 1-10 10 p., S33.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
mannosidases
alpha-Mannosidase
Genetic Association Studies
Bioinformatics
Computational Biology

An integrated transcriptomics and proteomics analysis of the secretome of the helminth pathogen Fasciola hepatica: Proteins associated with invasion and infection of the mammalian host

Robinson, M. W., Menon, R., Donnelly, S. M., Dalton, J. P. & Ranganathan, S., 2009, In : Molecular and Cellular Proteomics. 8, 8, p. 1891-1907 17 p.

Research output: Contribution to journalArticleResearchpeer-review

Fasciola hepatica
Helminths
Pathogens
Proteomics
Parasites

A proposed minimum skill set for university graduates to meet the informatics needs and challenges of the "-omics" era

Tan, T. W., Lim, S. J., Khan, A. M. & Ranganathan, S., 3 Dec 2009, In : BMC Genomics. 10, SUPPL. 3, p. 1-6 6 p., S36.

Research output: Contribution to journalArticleResearchpeer-review

Informatics
Bioinformatics
Computational Biology
bioinformatics
biologists

Bioinformatic analysis of abundant, gender-enriched transcripts of adult Ascaris suum (Nematoda) using a semi-automated workflow platform

Cantacessi, C., Zou, F. C., Hall, R. S., Zhong, W., Jex, A. R., Campbell, B. E., Ranganathan, S., Sternberg, P. W., Zhu, X. Q. & Gasser, R. B., Oct 2009, In : Molecular and Cellular Probes. 23, 5, p. 205-217 13 p.

Research output: Contribution to journalArticleResearchpeer-review

Ascaris suum
Nematoda
Workflow
Caenorhabditis elegans
Computational Biology

Combating medicinal plant extinction and indigenous culture loss - an Australian Model

Gaikwad, J., Jamie, J. F., Vemulpad, S., Kohen, J. & Ranganathan, S., 2009.

Research output: Contribution to conferenceAbstractResearch

Comprehensive splicing graph analysis of alternative splicing patterns in chicken, compared to human and mouse

Chacko, E. & Ranganathan, S., 7 Jul 2009, In : BMC Genomics. 10, SUPPL. 1, p. 1-11 11 p., S5.

Research output: Contribution to journalArticleResearchpeer-review

Alternative Splicing
Chickens
Genes
Exons
Introns

Extending Asia Pacific bioinformatics into new realms in the "-omics" era

Ranganathan, S., Eisenhaber, F., Tong, J. C. & Tan, T. W., 3 Dec 2009, In : BMC Genomics. 10, SUPPL. 3, p. 1-5 5 p., S1.

Research output: Contribution to journalEditorialResearch

Open Access
File
Computational Biology
Singapore
Education
Republic of Korea
Systems Biology

Genome-wide analysis of alternative splicing in cow: implications in bovine as a model for human diseases

Chacko, E. & Ranganathan, S., 3 Dec 2009, In : BMC Genomics. 10, Supplement 3, p. 1-13 13 p., S11.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
alternative splicing
Alternative Splicing
human diseases
Genes
Genome

Improved insights into the transcriptomes of the human hookworm Necator americanus - Fundamental and biotechnological implications

Rabelo, E. M., Hall, R. S., Loukas, A., Cooper, L., Hu, M., Ranganathan, S. & Gasser, R. B., Mar 2009, In : Biotechnology Advances. 27, 2, p. 122-132 11 p.

Research output: Contribution to journalReview articleResearchpeer-review

Necator americanus
Ancylostomatoidea
Vaccines
Transcriptome
Molecular biology

Physiochemical property space distribution among human metabolites, drugs and toxins

Khanna, V. & Ranganathan, S., 3 Dec 2009, In : BMC Bioinformatics. 10, SUPPL. 15, p. 1-18 18 p., S10.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Metabolites
Drugs
Molecules
Pharmaceutical Preparations
Molecular Descriptors

Secretome: Clues into pathogen infection and clinical applications

Ranganathan, S. & Garg, G., 30 Nov 2009, In : Genome Medicine. 1, 11, p. 1-7 7 p., 113.

Research output: Contribution to journalReview articleResearchpeer-review

Infection
Host-Pathogen Interactions
Proteins
Drug Discovery
Immune System

The genome sequence of taurine cattle: A window to ruminant biology and evolution

Elsik, C. G., Tellam, R. L., Worley, K. C., Gibbs, R. A., Muzny, D. M., Weinstock, G. M., Adelson, D. L., Eichler, E. E., Elnitski, L., Guigó, R., Hamernik, D. L., Kappes, S. M., Lewin, H. A., Lynn, D. J., Nicholas, F. W., Reymond, A., Rijnkels, M., Skow, L. C., Zdobnov, E. M., Schook, L. & 288 othersWomack, J., Alioto, T., Antonarakis, S. E., Astashyn, A., Chappie, C. E., Chen, H. C., Chrast, J., Câmara, F., Ermolaeva, O., Henrichsen, C. N., Hlavina, W., Kapustin, Y., Kiryutin, B., Kitts, P., Kokocinski, F., Landrum, M., Maglott, D., Pruitt, K., Sapojnikov, V., Searle, S. M., Solovyev, V., Souvorov, A., Ucla, C., Wyss, C., Anzola, J. M., Gerlach, D., Elhaik, E., Graur, D., Reese, J. T., Edgar, R. C., McEwan, J. C., Payne, G. M., Raison, J. M., Junier, T., Kriventseva, E. V., Eyras, E., Plass, M., Donthu, R., Larkin, D. M., Reecy, J., Yang, M. Q., Chen, L., Cheng, Z., Chitko-McKown, C. G., Liu, G. E., Matukumalli, L. K., Song, J., Zhu, B., Bradley, D. G., Brinkman, F. S. L., Lau, L. P. L., Whiteside, M. D., Walker, A., Wheeler, T. T., Casey, T., German, J. B., Lemay, D. G., Maqbool, N. J., Molenaar, A. J., Seo, S., Stothard, P., Baldwin, C. L., Baxter, R., Brinkmeyer-Larigford, C. L., Brown, W. C., Childers, C. P., Connelley, T., Ellis, S. A., Fritz, K., Glass, E. J., Herzig, C. T. A., Livanainen, A., Lahmers, K. K., Bennett, A. K., Dickens, C. M., Gilbert, J. G. R., Hagen, D. E., Salih, H., Aerts, J., Caetano, A. R., Dalrymple, B., Garcia, J. F., Gill, C. A., Hiendleder, S. G., Memili, E., Spurlock, D., Williams, J. L., Alexander, L., Brownstein, M. J., Guan, L., Holt, R. A., Jones, S. J. M., Marra, M. A., Moore, R., Moore, S. S., Roberts, A., Taniguchi, M., Waterman, R. C., Chacko, J., Chandrabose, M. M., Cree, A., Dao, M. D., Dinh, H. H., Gabisi, R. A., Hines, S., Hume, J., Jhangiani, S. N., Joshi, V., Kovar, C. L., Lewis, L. R., Liu, Y. S., Lopez, J., Morgan, M. B., Nguyen, N. B., Okwuonu, G. O., Ruiz, S. J., Santibanez, J., Wright, R. A., Buhay, C., Ding, Y., Dugan-Rocha, S., Herdandez, J., Holder, M., Sabo, A., Egan, A., Goodell, J., Wilczek-Boney, K., Fowler, G. R., Hitchens, M. E., Lozado, R. J., Moen, C., Steffen, D., Warren, J. T., Zhang, J., Chiu, R., Schein, J. E., Durbin, K. J., Havlak, P., Jiang, H., Liu, Y., Qin, X., Ren, Y., Shen, Y., Song, H., Bell, S. N., Davis, C., Johnson, A. J., Lee, S., Nazareth, L. V., Patel, B. M., Pu, L. L., Vattathil, S., Williams, R. L., Curry, S., Hamilton, C., Sodergren, E., Wheeler, D. A., Barris, W., Bennett, G. L., Eggen, A., Green, R. D., Harhay, G. P., Hobbs, M., Jann, O., Keele, J. W., Kent, M. P., Lien, S., McKay, S. D., McWilliam, S., Ratnakumar, A., Schnabel, R. D., Smith, T., Snelling, W. M., Sonstegard, T. S., Stone, R. T., Sugimoto, Y., Takasuga, A., Taylor, J. F., Van Tassell, C. P., MacNeil, M. D., Abatepaulo, A. R. R., Abbey, C. A., Ahola, V., Almeida, L. G., Amadio, A. F., Anatriello, E., Bahadue, S. M., Biase, F. H., Boldt, C. R., Carroll, J. A., Carvalho, W. A., Cervelatti, E. P., Chacko, E., Chapin, J. E., Cheng, Y., Choi, J., Colley, A. J., DeCampos, T. A., De Donato, M., De Miranda Santos, I. K. F., De Oliveira, C. J. F., Deobald, H., Devinoy, E., Donohue, K. E., Dove, P., Eberlein, A., Fitzsimmons, C. J., Franzin, A. M., Garcia, G. R., Genini, S., Gladney, C. J., Grant, J. R., Greaser, M. L., Green, J. A., Hadsell, D. L., Hakimov, H. A., Halgren, R., Harrow, J. L., Hart, E. A., Hastings, N., Hernandez, M., Hu, Z. L., Iivanainen, A., Ingham, A., Iso-Touru, T., Jamis, C., Jensen, K., Kapetis, D., Kerr, T., Khalil, S. S., Khatib, H., Kolbehdari, D., Kumar, C. G., Kumar, D., Leach, R., Lee, J. C. M., Li, C., Logan, K. M., Malinverni, R., Marques, E., Martin, W. F., Martins, N. F., Maruyama, S. R., Mazza, R., McLean, K. L., Medrano, J. F., Moreno, B. T., More, D. D., Muntean, C. T., Nandakumar, H. P., Nogueira, M. F. G., Olsaker, I., Pant, S. D., Panzitta, F., Pastor, R. C. P., Poli, M. A., Poslusny, N., Rachagani, S., Ranganathan, S., Razpet, A., Riggs, P. K., Rincón, G., Rodriguez-Osorio, N., Rodriguez-Zas, S. L., Romero, N. E., Rosenwald, A., Sando, L., Schmutz, S. M., Shen, L., Sherman, L., Southey, B. R., Lutzow, Y. S., Sweedler, J. V., Tammen, I., Telugu, B. P. V. L., Urbanski, J. M., Utsunomiya, Y. T., Verschoor, C. P., Waardenberg, A. J., Wang, Z., Ward, R., WeiKard, R., Welsh, T. H., White, S. N., Wilming, L. G., Wunderlich, K. R., Yang, J. & Zhao, F. Q., 24 Apr 2009, In : Science. 324, 5926, p. 522-528 7 p.

Research output: Contribution to journalArticleResearchpeer-review

Taurine
Ruminants
Genome
Genes
Genomic Segmental Duplications

Towards a career in bioinformatics

Ranganathan, S., 3 Dec 2009, In : BMC Bioinformatics. 10, SUPPL. 15, p. 1-4 4 p., S1.

Research output: Contribution to journalEditorialResearch

Open Access
File
Bioinformatics
Computational Biology
Students
Singapore
Research Personnel
2008

Bioinformatics research in the Asia Pacific: a 2007 update

Ranganathan, S., Gribskov, M. & Tan, T. W., 2008, In : BMC Bioinformatics. 9, Suppl. 1, p. 1-4 4 p., S1.

Research output: Contribution to journalEditorialResearchpeer-review

Open Access
File
Bioinformatics
Computational Biology
Update
Research
Hong Kong

Chemoinformatics module for CMKb, a custromary medicinal database

Khanna, V., Gaikwad, J. A., Jamie, J. F. & Ranganathan, S., 2008.

Research output: Contribution to conferenceAbstractResearch

CMKb: a web-based prototype for integrating Australian Aboriginal customary medicinal plant knowledge

Gaikwad, J., Khanna, V., Vemulpad, S., Jamie, J., Kohen, J. & Ranganathan, S., 12 Dec 2008, In : BMC Bioinformatics. 9, SUPPL. 12, p. 1-8 8 p., S25.

Research output: Contribution to journalArticleResearchpeer-review

Knowledge Bases
Medicinal Plants
prototypes
Knowledge Base
Web-based

Critical technologies for bioinformatics

Brusic, V. & Ranganathan, S., Jul 2008, In : Briefings in Bioinformatics. 9, 4, p. 261-262 2 p.

Research output: Contribution to journalEditorialResearchpeer-review

Emerging strengths in Asia Pacific bioinformatics

Ranganathan, S., Hsu, W. L., Yang, U. C. & Tan, T. W., 12 Dec 2008, In : BMC Bioinformatics. 9, SUPPL. 12, p. 1-5 5 p., S1.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Bioinformatics
Computational Biology
Systems Biology
Taiwan
Annual

Flanking signal and mature peptide residues influence signal peptide cleavage

Choo, K. H. & Ranganathan, S., 12 Dec 2008, In : BMC Bioinformatics. 9, SUPPL. 12, p. 1-11 11 p., S15.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Protein Sorting Signals
signal peptide
Peptides
peptides
peptidases

Functional and structural implications of the complement factor H Y402H polymorphism associated with Age-Related macular degeneration

Ormsby, R. J., Ranganathan, S., Tong, J. C., Griggs, K. M., Dimasi, D. P., Hewitt, A. W., Burdon, K. P., Craig, J. E., Hoh, J. & Gordon, D. L., Apr 2008, In : Investigative Ophthalmology and Visual Science. 49, 5, p. 1763-1770 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Complement Factor H
Macular Degeneration
C-Reactive Protein
Retinal Pigments
Epithelial Cells

Gender-enriched transcripts in Haemonchus contortus - predicted functions and genetic interactions based on comparative analyses with Caenorhabditis elegans

Campbell, B. E., Nagaraj, S. H., Hu, M., Zhong, W., Sternberg, P. W., Ong, E. K., Loukas, A., Ranganathan, S., Beveridge, I., McInnes, R. L., Hutchinson, G. W. & Gasser, R. B., Jan 2008, In : International Journal for Parasitology. 38, 1, p. 65-83 19 p.

Research output: Contribution to journalArticleResearchpeer-review

Haemonchus
Expressed Sequence Tags
Caenorhabditis elegans
Complementary RNA
Computational Biology

Immunoinformatics

Schönbach, C. (ed.), Ranganathan, S. (ed.) & Brusic, V. (ed.), 2008, New York: Springer, Springer Nature. 200 p.

Research output: Book/ReportEdited Book/AnthologyResearchpeer-review

Allergy and Immunology
Genomics
Research
Immune System
Information Science

In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): Comparison of the automated ESTExplorer workflow platform with conventional database searches

Nagaraj, S. H., Gasser, R. B., Nisbet, A. J. & Ranganathan, S., 13 Feb 2008, In : BMC Bioinformatics. 9, SUPPL. 1, p. 1-17 17 p., S10.

Research output: Contribution to journalArticleResearchpeer-review

Trichostrongylus
Nematoda
Workflow
Expressed Sequence Tags
Computer Simulation

Integration of protein Interaction and Metabolic Data for Subcellular Localization Prediction

Cootes, A., Nevalainen, H. K. M. & Ranganathan, S., 2008, p. P98-P98. 1 p.

Research output: Contribution to conferenceAbstractResearch

Modeling Escherichia coli signal peptidase complex with bound substrate: determinants in the mature peptide influencing signal peptide cleavage

Choo, K. H., Tong, J. C. & Ranganathan, S., 13 Feb 2008, In : BMC Bioinformatics. 9, SUPPL. 1, p. 1-7 7 p., S15.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Binding sites
Protein Sorting Signals
Peptides
Escherichia coli
Escherichia Coli

Needles in the EST haystack: Large-scale identification and analysis of excretory-secretory (ES) proteins in parasitic nematodes using expressed sequence tags (ESTs)

Nagaraj, S. H., Gasser, R. B. & Ranganathan, S., Aug 2008, In : PLoS Neglected Tropical Diseases. 2, 9, p. 1-17 17 p., e301.

Research output: Contribution to journalArticleResearchpeer-review

Expressed Sequence Tags
Needles
Proteins
Vaccines
Caenorhabditis elegans

Proceedings, Seventh International Conference on Bioinformatics (InCoB2008) Taipei, Taiwan. 20-23 October 2008

Ranganathan, S. (ed.), Hsu, W-L. (ed.), Yang, U-C. (ed.) & Tan, T. W. (ed.), 2008, London: Springer, Springer Nature.

Research output: Book/ReportEdited Book/AnthologyResearch

edition
Taiwan

Structural immunoinformatics

Ranganathan, S., Tong, J. C. & Tan, T. W., 2008, Immunoinformatics. Schönbach, C., Ranganathan, S. & Brusic, V. (eds.). New York: Springer, Springer Nature, p. 51-61 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapterResearchpeer-review

Major Histocompatibility Complex
Peptides
Alleles
X Ray Crystallography
Adaptive Immunity

Tandem duplication, circular permutation, molecular adaptation: how Solanaceae resist pests via inhibitors

Kong, L. & Ranganathan, S., 13 Feb 2008, In : BMC Bioinformatics. 9, SUPPL. 1, p. 1-15 15 p., S22.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Solanaceae
Duplication
Solanum tuberosum
Resist
Inhibitor

Transcriptional changes in the hookworm, Ancylostoma caninum, during the transition from a free-living to a parasitic larva

Datu, B. J. D., Gasser, R. B., Nagaraj, S. H., Ong, E. K., O'Donoghue, P., McInnes, R., Ranganathan, S. & Loukas, A., Jan 2008, In : PLoS Neglected Tropical Diseases. 2, 1, p. 1-15 15 p., e130.

Research output: Contribution to journalArticleResearchpeer-review

Ancylostoma
Ancylostomatoidea
Larva
Messenger RNA
Caenorhabditis elegans
2007

A hitchhiker's guide to expressed sequence tag (EST) analysis

Nagaraj, S. H., Gasser, R. B. & Ranganathan, S., Jan 2007, In : Briefings in Bioinformatics. 8, 1, p. 6-21 16 p.

Research output: Contribution to journalEditorialResearchpeer-review

Expressed Sequence Tags
Sequence Analysis
Genes
Nucleotides
Functional analysis

A practical guide to structure-based prediction of MHC-binding peptides

Ranganathan, S. & Tong, J. C., 2007, In : Methods in molecular biology (Clifton, N.J.). 409, p. 301-308 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Major Histocompatibility Complex
Peptides
Ligands
Structural Models
Alleles

A transcriptomic analysis of the adult stage of the bovine lungworm, Dictyocaulus viviparus

Ranganathan, S., Nagaraj, S. H., Hu, M., Strube, C., Schnieder, T. & Gasser, R. B., 5 Sep 2007, In : BMC Genomics. 8, p. 1-13 13 p., 311.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Dictyocaulus
Expressed Sequence Tags
Transcriptome
Infertility
Genes

A workflow for mutation extraction and structure annotation

Kanagasabai, R., Choo, K. H., Ranganathan, S. & Baker, C. J. O., Dec 2007, In : Journal of Bioinformatics and Computational Biology. 5, 6, p. 1319-1337 19 p.

Research output: Contribution to journalArticleResearchpeer-review

Workflow
Visualization
Ontology
Mutation
Pipelines

CASVM: web server for SVM-based prediction of caspase substrates cleavage sites

Wee, L. J. K., Tan, T. W. & Ranganathan, S., Dec 2007, In : Bioinformatics. 23, 23, p. 3241-3243 3 p.

Research output: Contribution to journalArticleResearchpeer-review

Web Server
Caspases
Support vector machines
Support Vector Machine
Servers