• 5268 Citations
  • 37 h-Index
1980 …2021
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Research Outputs 1980 2019

Systems proteomics view of the endogenous human claudin protein family

Liu, F., Koval, M., Ranganathan, S., Fanayan, S., Hancock, W. S., Lundberg, E. K., Beavis, R. C., Lane, L., Duek, P., McQuade, L., Kelleher, N. L. & Baker, M. S., 5 Feb 2016, In : Journal of Proteome Research. 15, 2, p. 339-359 21 p.

Research output: Contribution to journalReview articleResearchpeer-review

Claudins
Proteomics
Proteins
Tissue
Tight Junction Proteins

Tandem duplication, circular permutation, molecular adaptation: how Solanaceae resist pests via inhibitors

Kong, L. & Ranganathan, S., 13 Feb 2008, In : BMC Bioinformatics. 9, SUPPL. 1, p. 1-15 15 p., S22.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Solanaceae
Duplication
Solanum tuberosum
Resist
Inhibitor

T cell activation

Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). Springer, Springer Nature, p. 2115-2115 1 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference bookResearch

T cell epitopes

Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 2118-2119 2 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference bookResearch

T cell signalling

Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 2119-2119 1 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference bookResearch

The Asia-Pacific regional perspective on bioinformatics

Miyano, S. & Ranganathan, S., 2001, In : IEEE Intelligent Systems. 16, 6, p. 19-20; 61 3 p.

Research output: Contribution to journalEditorialResearchpeer-review

The force field of carbon suboxide

Murthy, A. S. N. & Ranganathan, S., 1982, In : Journal of Molecular Structure. 90, C, p. 219-226 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Molecular orbitals
Stretching
Geometry
carbon suboxide
Compliance

The gene for a novel member of the whey acidic protein family encodes three four-disulfide core domains and is asynchronously expressed during lactation

Simpson, K. J., Ranganathani, S., Fisher, J. A., Janssens, P. A., Shaw, D. C. & Nicholas, K. R., 28 Jul 2000, In : Journal of Biological Chemistry. 275, 30, p. 23074-23081 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Lactation
Disulfides
Macropodidae
Genes
Protease Inhibitors

The genome sequence of taurine cattle: A window to ruminant biology and evolution

Elsik, C. G., Tellam, R. L., Worley, K. C., Gibbs, R. A., Muzny, D. M., Weinstock, G. M., Adelson, D. L., Eichler, E. E., Elnitski, L., Guigó, R., Hamernik, D. L., Kappes, S. M., Lewin, H. A., Lynn, D. J., Nicholas, F. W., Reymond, A., Rijnkels, M., Skow, L. C., Zdobnov, E. M., Schook, L. & 288 othersWomack, J., Alioto, T., Antonarakis, S. E., Astashyn, A., Chappie, C. E., Chen, H. C., Chrast, J., Câmara, F., Ermolaeva, O., Henrichsen, C. N., Hlavina, W., Kapustin, Y., Kiryutin, B., Kitts, P., Kokocinski, F., Landrum, M., Maglott, D., Pruitt, K., Sapojnikov, V., Searle, S. M., Solovyev, V., Souvorov, A., Ucla, C., Wyss, C., Anzola, J. M., Gerlach, D., Elhaik, E., Graur, D., Reese, J. T., Edgar, R. C., McEwan, J. C., Payne, G. M., Raison, J. M., Junier, T., Kriventseva, E. V., Eyras, E., Plass, M., Donthu, R., Larkin, D. M., Reecy, J., Yang, M. Q., Chen, L., Cheng, Z., Chitko-McKown, C. G., Liu, G. E., Matukumalli, L. K., Song, J., Zhu, B., Bradley, D. G., Brinkman, F. S. L., Lau, L. P. L., Whiteside, M. D., Walker, A., Wheeler, T. T., Casey, T., German, J. B., Lemay, D. G., Maqbool, N. J., Molenaar, A. J., Seo, S., Stothard, P., Baldwin, C. L., Baxter, R., Brinkmeyer-Larigford, C. L., Brown, W. C., Childers, C. P., Connelley, T., Ellis, S. A., Fritz, K., Glass, E. J., Herzig, C. T. A., Livanainen, A., Lahmers, K. K., Bennett, A. K., Dickens, C. M., Gilbert, J. G. R., Hagen, D. E., Salih, H., Aerts, J., Caetano, A. R., Dalrymple, B., Garcia, J. F., Gill, C. A., Hiendleder, S. G., Memili, E., Spurlock, D., Williams, J. L., Alexander, L., Brownstein, M. J., Guan, L., Holt, R. A., Jones, S. J. M., Marra, M. A., Moore, R., Moore, S. S., Roberts, A., Taniguchi, M., Waterman, R. C., Chacko, J., Chandrabose, M. M., Cree, A., Dao, M. D., Dinh, H. H., Gabisi, R. A., Hines, S., Hume, J., Jhangiani, S. N., Joshi, V., Kovar, C. L., Lewis, L. R., Liu, Y. S., Lopez, J., Morgan, M. B., Nguyen, N. B., Okwuonu, G. O., Ruiz, S. J., Santibanez, J., Wright, R. A., Buhay, C., Ding, Y., Dugan-Rocha, S., Herdandez, J., Holder, M., Sabo, A., Egan, A., Goodell, J., Wilczek-Boney, K., Fowler, G. R., Hitchens, M. E., Lozado, R. J., Moen, C., Steffen, D., Warren, J. T., Zhang, J., Chiu, R., Schein, J. E., Durbin, K. J., Havlak, P., Jiang, H., Liu, Y., Qin, X., Ren, Y., Shen, Y., Song, H., Bell, S. N., Davis, C., Johnson, A. J., Lee, S., Nazareth, L. V., Patel, B. M., Pu, L. L., Vattathil, S., Williams, R. L., Curry, S., Hamilton, C., Sodergren, E., Wheeler, D. A., Barris, W., Bennett, G. L., Eggen, A., Green, R. D., Harhay, G. P., Hobbs, M., Jann, O., Keele, J. W., Kent, M. P., Lien, S., McKay, S. D., McWilliam, S., Ratnakumar, A., Schnabel, R. D., Smith, T., Snelling, W. M., Sonstegard, T. S., Stone, R. T., Sugimoto, Y., Takasuga, A., Taylor, J. F., Van Tassell, C. P., MacNeil, M. D., Abatepaulo, A. R. R., Abbey, C. A., Ahola, V., Almeida, L. G., Amadio, A. F., Anatriello, E., Bahadue, S. M., Biase, F. H., Boldt, C. R., Carroll, J. A., Carvalho, W. A., Cervelatti, E. P., Chacko, E., Chapin, J. E., Cheng, Y., Choi, J., Colley, A. J., DeCampos, T. A., De Donato, M., De Miranda Santos, I. K. F., De Oliveira, C. J. F., Deobald, H., Devinoy, E., Donohue, K. E., Dove, P., Eberlein, A., Fitzsimmons, C. J., Franzin, A. M., Garcia, G. R., Genini, S., Gladney, C. J., Grant, J. R., Greaser, M. L., Green, J. A., Hadsell, D. L., Hakimov, H. A., Halgren, R., Harrow, J. L., Hart, E. A., Hastings, N., Hernandez, M., Hu, Z. L., Iivanainen, A., Ingham, A., Iso-Touru, T., Jamis, C., Jensen, K., Kapetis, D., Kerr, T., Khalil, S. S., Khatib, H., Kolbehdari, D., Kumar, C. G., Kumar, D., Leach, R., Lee, J. C. M., Li, C., Logan, K. M., Malinverni, R., Marques, E., Martin, W. F., Martins, N. F., Maruyama, S. R., Mazza, R., McLean, K. L., Medrano, J. F., Moreno, B. T., More, D. D., Muntean, C. T., Nandakumar, H. P., Nogueira, M. F. G., Olsaker, I., Pant, S. D., Panzitta, F., Pastor, R. C. P., Poli, M. A., Poslusny, N., Rachagani, S., Ranganathan, S., Razpet, A., Riggs, P. K., Rincón, G., Rodriguez-Osorio, N., Rodriguez-Zas, S. L., Romero, N. E., Rosenwald, A., Sando, L., Schmutz, S. M., Shen, L., Sherman, L., Southey, B. R., Lutzow, Y. S., Sweedler, J. V., Tammen, I., Telugu, B. P. V. L., Urbanski, J. M., Utsunomiya, Y. T., Verschoor, C. P., Waardenberg, A. J., Wang, Z., Ward, R., WeiKard, R., Welsh, T. H., White, S. N., Wilming, L. G., Wunderlich, K. R., Yang, J. & Zhao, F. Q., 24 Apr 2009, In : Science. 324, 5926, p. 522-528 7 p.

Research output: Contribution to journalArticleResearchpeer-review

Taurine
Ruminants
Genome
Genes
Genomic Segmental Duplications

The gramicidin A channel: comparison of the energy profiles of Na+, K+ and Cs+. Influence of the flexibility of the ethanolamine end chain on the profiles

Etchebest, C., Ranganathan, S. & Pullman, A., 6 Aug 1984, In : FEBS Letters. 173, 2, p. 301-306 6 p.

Research output: Contribution to journalArticleResearchpeer-review

Gramicidin
Ethanolamine
Cesium
Energy barriers
Conformations

The gramicidin A channel: theoretical energy profile computed for single occupancy by a divalent cation, Ca2+

Etchebest, C., Pullman, A. & Ranganathan, S., 8 Aug 1985, In : BBA - Biomembranes. 818, 1, p. 23-30 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Gramicidin
Divalent Cations
Conformations
Ethanolamine
Alkalies

The hand, foot and mouth disease virus capsid: sequence analysis and prediction of antigenic sites from homology modelling.

Ranganathan, S., Singh, S., Poh, C. L. & Chow, V. T., 2002, In : Appl Bioinformatics. 1, 1, p. 43-52 10 p.

Research output: Contribution to journalArticleResearchpeer-review

hand, foot and mouth disease
Hand, Foot and Mouth Disease
Foot-and-Mouth Disease Virus
Enterovirus
capsid

The integrin αLβ2 hybrid domain serves as a link for the propagation of activation signal from its stalk regions to the I-like domain

Tng, E., Tan, S. M., Ranganathan, S., Cheng, M. & Law, S. K. A., 24 Dec 2004, In : Journal of Biological Chemistry. 279, 52, p. 54334-54339 6 p.

Research output: Contribution to journalArticleResearchpeer-review

Lymphocyte Function-Associated Antigen-1
Integrins
Chemical activation
Intercellular Adhesion Molecule-1
Adhesion

The S-Star Trial Bioinformatics course: An on-line learning success

Lim, Y. P., Höög, J. O., Gardner, P., Ranganathan, S., Andersson, S., Subbiah, S., Tan, T. W., Hide, W. & Weiss, A. S., Jan 2003, In : Biochemistry and Molecular Biology Education. 31, 1, p. 20-23 4 p.

Research output: Contribution to journalArticleResearchpeer-review

Bioinformatics
Computational Biology
Distance Education
Stars
Distance education

The transcriptome analysis of strongyloides stercoralis L3i larvae reveals targets for intervention in a neglected disease

Marcilla, A., Garg, G., Bernal, D., Ranganathan, S., Forment, J., Ortiz, J., Muñoz-Antolí, C., Dominguez, M. V., Pedrola, L., Martinez-Blanch, J., Sotillo, J., Trelis, M., Toledo, R. & Esteban, J. G., Feb 2012, In : PLoS Neglected Tropical Diseases. 6, 2, p. 1-9 9 p., e1513.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Strongyloides stercoralis
Neglected Diseases
Gene Expression Profiling
Larva
Transcriptome

The transcriptome of Echinostoma caproni adults: Further characterization of the secretome and identification of new potential drug targets

Garg, G., Bernal, D., Trelis, M., Forment, J., Ortiz, J., Valero, M. L., Pedrola, L., Martinez-Blanch, J., Esteban, J. G., Ranganathan, S., Toledo, R. & Marcilla, A., 26 Aug 2013, In : Journal of Proteomics. 89, p. 202-214 13 p.

Research output: Contribution to journalArticleResearchpeer-review

Echinostoma
Transcriptome
Helminths
Pharmaceutical Preparations
Proteins

The use of CNDO/force and compliance constant methods in evaluating quadratic potential functions of carbonyl and formyl fluorides

Murthy, A. S. N. & Ranganathan, S., 1983, In : Journal of Computational Chemistry. 4, 2, p. 175-180 6 p.

Research output: Contribution to journalArticleResearchpeer-review

Potential Function
Quadratic Function
Fluorides
Compliance
Stretching

The whey acidic protein family: A new signature motif and three-dimensional structure by comparative modeling

Ranganathan, S., Simpson, K. J., Shaw, D. C. & Nicholas, K. R., Apr 1999, In : Journal of Molecular Graphics and Modelling. 17, 2, p. 106-113 8 p.

Research output: Contribution to journalArticleResearchpeer-review

signatures
proteins
Proteins
Peptide Hydrolases
swine

Towards a career in bioinformatics

Ranganathan, S., 3 Dec 2009, In : BMC Bioinformatics. 10, SUPPL. 15, p. 1-4 4 p., S1.

Research output: Contribution to journalEditorialResearch

Open Access
File
Bioinformatics
Computational Biology
Students
Singapore
Research Personnel

Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference

Ranganathan, S., Schönbach, C., Kelso, J., Rost, B., Nathan, S. & Tan, T. W., 30 Nov 2011, In : BMC Bioinformatics. 12, SUPPL. 13, p. 1-4 4 p., S1.

Research output: Contribution to journalEditorialResearchpeer-review

Open Access
File
Computational Biology
Bioinformatics
Joints
Genome
Genes

Towards BioDBcore: a community-defined information specification for biological databases

Gaudet, P., Bairoch, A., Field, D., Sansone, S. A., Taylor, C., Attwood, T. K., Bateman, A., Blake, J. A., Bult, C. J., Cherry, J. M., Chisholm, R. L., Cochrane, G., Cook, C. E., Eppig, J. T., Galperin, M. Y., Gentleman, R., Goble, C. A., Gojobori, T., Hancock, J. M., Howe, D. G. & 18 othersImanishi, T., Kelso, J., Landsman, D., Lewis, S. E., Karsch-Mizrachi, I., Orchard, S., Ouellette, B. F. F., Ranganathan, S., Richardson, L., Rocca-Serra, P., Schofield, P. N., Smedley, D., Southan, C., Tan, T. W., Tatusova, T., Whetzel, P. L., White, O. & Yamasaki, C., Jan 2011, In : Nucleic acids research. 39, SUPPL. 1, p. D7-D10 4 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Databases
Semantics

Towards BioDBcore: A community-defined information specification for biological databases

Gaudet, P., Bairoch, A., Field, D., Sansone, S. A., Taylor, C., Attwood, T. K., Bateman, A., Blake, J. A., Bult, C. J., Cherry, J. M., Chisholm, R. L., Cochrane, G., Cook, C. E., Eppig, J. T., Galperin, M. Y., Gentleman, R., Goble, C. A., Gojobori, T., Hancock, J. M., Howe, D. G. & 18 othersImanishi, T., Kelso, J., Landsman, D., Lewis, S. E., Mizrachi, I. K., Orchard, S., Ouellette, B. F. F., Ranganathan, S., Richardson, L., Rocca-Serra, P., Schofield, P. N., Smedley, D., Southan, C., Tan, T. W., Tatusova, T., Whetzel, P. L., White, O. & Yamasaki, C., 2011, In : Database. 2011, p. 1-6 6 p., baq027.

Research output: Contribution to journalArticleResearchpeer-review

Databases
Specifications
Syntactics
Semantics
Interoperability

Transcriptional changes in the hookworm, Ancylostoma caninum, during the transition from a free-living to a parasitic larva

Datu, B. J. D., Gasser, R. B., Nagaraj, S. H., Ong, E. K., O'Donoghue, P., McInnes, R., Ranganathan, S. & Loukas, A., Jan 2008, In : PLoS Neglected Tropical Diseases. 2, 1, p. 1-15 15 p., e130.

Research output: Contribution to journalArticleResearchpeer-review

Ancylostoma
Ancylostomatoidea
Larva
Messenger RNA
Caenorhabditis elegans

Transcriptome analysis reveals pathogenicity and evolutionary history of the pathogenic oomycete Pythium insidiosum

Krajaejun, T., Lerksuthirat, T., Garg, G., Lowhnoo, T., Yingyong, W., Khositnithikul, R., Tangphatsornruang, S., Suriyaphol, P., Ranganathan, S. & Sullivan, T. D., 2014, In : Fungal Biology. 118, 7, p. 640-653 14 p.

Research output: Contribution to journalArticleResearchpeer-review

Pythium insidiosum
Pythium
Oomycetes
pathogenicity
Gene Expression Profiling

TranSeqAnnotator: large-scale analysis of transcriptomic data.

Menon, R., Garg, G., Gasser, R. B. & Ranganathan, S., 2012, In : BMC Bioinformatics. 13, Suppl 17, p. 1-7 7 p., S24.

Research output: Contribution to journalConference paperResearchpeer-review

Expressed Sequence Tags
Proteins
Protein
Pipelines
Computational Biology

TR Germline Bias

Ranganathan, S., 2013, Encyclopedia of Systems Biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 2212-2212 1 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference bookResearch

TR recognition of MHC-peptide complexes

Khan, J. & Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 2212-2218 7 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference bookResearch

Understanding TR binding to pMHC complexes: how does a TR scan many pMHC complexes yet preferentially bind to one

Khan, J. M. & Ranganathan, S., 2011, In : PLoS ONE. 6, 2, p. 1-12 12 p., e17194.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
T-Cell Antigen Receptor
T-lymphocytes
peptides
Peptides
receptors

Unlocking the puzzling biology of the Black Périgord truffle Tuber melanosporum

Islam, M. T., Mohamedali, A., Garg, G., Khan, J. M., Gorse, A. D., Parsons, J., Marshall, P., Ranganathan, S. & Baker, M. S., 6 Dec 2013, In : Journal of Proteome Research. 12, 12, p. 5349-5356 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Perfume
Fragrances
Proteins
Proteomics
Biochemistry

Untangling biological networks using bioinformatics

Kumar, G., Cootes, A. P. & Ranganathan, S., 2011, Algorithms in computational molecular biology: Techniques, approaches and applications. Elloumi, M. & Zomaya, A. Y. (eds.). Oxford: Wiley-Blackwell, Wiley, p. 867-892 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapterResearchpeer-review

Whole-genome sequence of Schistosoma haematobium

Young, N. D., Jex, A. R., Li, B., Liu, S., Yang, L., Xiong, Z., Li, Y., Cantacessi, C., Hall, R. S., Xu, X., Chen, F., Wu, X., Zerlotini, A., Oliveira, G., Hofmann, A., Zhang, G., Fang, X., Kang, Y., Campbell, B. E., Loukas, A. & 8 othersRanganathan, S., Rollinson, D., Rinaldi, G., Brindley, P. J., Yang, H., Wang, J., Wang, J. & Gasser, R. B., Feb 2012, In : Nature Genetics. 44, 2, p. 221-225 5 p.

Research output: Contribution to journalArticleResearchpeer-review

Schistosoma haematobium
Genome
Parasites
Neglected Diseases
Schistosoma

Wormsplice: An alternative splicing database of C. Elegans using splicing graphs

Bollina, D. & Ranganathan, S., 2004, p. 7-7. 1 p.

Research output: Contribution to conferenceAbstractResearch

XdomView: Protein domain and exon position visualization

Vivek, G., Tan, T. W. & Ranganathan, S., 1 Jan 2003, In : Bioinformatics. 19, 1, p. 159-160 2 p.

Research output: Contribution to journalArticleResearchpeer-review

Exons
Visualization
Genes
Gene
Proteins

Xpro: database of eukaryotic protein-encoding genes

Gopalan, V., Tan, T. W., Lee, B. T. K. & Ranganathan, S., 1 Jan 2004, In : Nucleic acids research. 32, Database issue, p. D59-D63 5 p.

Research output: Contribution to journalArticleResearchpeer-review

Protein Databases
Introns
Nucleic Acid Databases
Databases
Genes

Κ-Hefutoxin1, a novel toxin from the Scorpion Heterometrus fulvipes with unique structure and function

Srinivasan, K. N., Sivaraja, V., Huys, I., Sasaki, T., Cheng, B., Kumar, T. K. S., Sato, K., Tytgat, J., Yu, C., San, B. C. C., Ranganathan, S., Bowie, H. J., Kini, R. M. & Gopalakrishnakone, P., 16 Aug 2002, In : Journal of Biological Chemistry. 277, 33, p. 30040-30047 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Scorpions
Potassium Channels
Nuclear magnetic resonance
Scorpion Venoms
Voltage-Gated Potassium Channels