• 5273 Citations
  • 37 h-Index
1980 …2021
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Research Outputs 1980 2019

Editorial

InCoB2010 - 9thInternational Conference on Bioinformatics at Tokyo, Japan, September 26-28, 2010

Schönbach, C., Nakai, K., Tan, T. W. & Ranganathan, S., 15 Oct 2010, In : BMC Bioinformatics. 11, SUPPL. 7, p. 1-4 4 p., S1.

Research output: Contribution to journalEditorialResearch

Tokyo
Bioinformatics
Computational Biology
Japan
bioinformatics

Introduction to selected papers from GIW/InCoB 2015

Horton, P., Schönbach, C., Ranganathan, S. & Yiu, S. M., 1 Oct 2015, In : Journal of Bioinformatics and Computational Biology. 13, 5, 2 p., 1502003.

Research output: Contribution to journalEditorialResearch

The Asia-Pacific regional perspective on bioinformatics

Miyano, S. & Ranganathan, S., 2001, In : IEEE Intelligent Systems. 16, 6, p. 19-20; 61 3 p.

Research output: Contribution to journalEditorialResearchpeer-review

Towards a career in bioinformatics

Ranganathan, S., 3 Dec 2009, In : BMC Bioinformatics. 10, SUPPL. 15, p. 1-4 4 p., S1.

Research output: Contribution to journalEditorialResearch

Open Access
File
Bioinformatics
Computational Biology
Students
Singapore
Research Personnel

Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference

Ranganathan, S., Schönbach, C., Kelso, J., Rost, B., Nathan, S. & Tan, T. W., 30 Nov 2011, In : BMC Bioinformatics. 12, SUPPL. 13, p. 1-4 4 p., S1.

Research output: Contribution to journalEditorialResearchpeer-review

Open Access
File
Computational Biology
Bioinformatics
Joints
Genome
Genes
Entry for encyclopedia/dictionary/reference book

Adaptive immune system

Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 10-11 2 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference bookResearch

Genome databases and browsers

Southwood, D. & Ranganathan, S., 2019, Encyclopedia of bioinformatics and computational biology. Ranganathan, S., Gribskov, M., Nakai, K. & Schönbach, C. (eds.). Amsterdam: Elsevier, Vol. 2. p. 251-256 6 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference bookResearchpeer-review

Identification of proteins from proteomic analysis

Noor, Z., Mohamedali, A. & Ranganathan, S., 2019, Encyclopedia of bioinformatics and computational biology. Cannataro, M., Gaeta, B. & Asif Khan, M. (eds.). Amsterdam; Oxford; Cambridge: Elsevier, Vol. 3. p. 855-870 16 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference bookResearchpeer-review

Proteins
Biomarkers
Mass spectrometers
Bioinformatics
Fruits

pMHC epitope

Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 1718-1719 2 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference bookResearch

Protocol for protein structure modelling

Jabeen, A., Mohamedali, A. & Ranganathan, S., 2019, Encyclopedia of bioinformatics and computational biology. Cannataro, M., Gaeta, B. & Asif Khan, M. (eds.). Amsterdam; Oxford; Cambridge: Elsevier, Vol. 3. p. 252-272 21 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference bookResearchpeer-review

Proteins

Quantification of proteins from proteomic analysis

Noor, Z., Adhikari, S., Ranganathan, S. & Mohamedali, A., 2019, Encyclopedia of bioinformatics and computational biology. Cannataro, M., Gaeta, B. & Asif Khan, M. (eds.). Amsterdam; Oxford; Cambridge: Elsevier, Vol. 3. p. 871-890 20 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference bookResearchpeer-review

Proteins
Mass spectrometry
Proteomics
Experiments

Structural immunoinformatics

Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 2022-2023 2 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference bookResearch

T cell activation

Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). Springer, Springer Nature, p. 2115-2115 1 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference bookResearch

T cell epitopes

Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 2118-2119 2 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference bookResearch

T cell signalling

Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 2119-2119 1 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference bookResearch

TR Germline Bias

Ranganathan, S., 2013, Encyclopedia of Systems Biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 2212-2212 1 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference bookResearch

TR recognition of MHC-peptide complexes

Khan, J. & Ranganathan, S., 2013, Encyclopedia of systems biology. Dubitzky, W., Wolkenhauer, O., Cho, K-H. & Yokota, H. (eds.). New York: Springer, Springer Nature, p. 2212-2218 7 p.

Research output: Chapter in Book/Report/Conference proceedingEntry for encyclopedia/dictionary/reference bookResearch

Meeting abstract

Analysis and comparison of γ-retroviral vector integration behaviour in human CD34+cells transduced under conditions employed in the French and English SCID-X1 clinical trials

Hallwirth, C. V., Garg, G., Malani, N. V., Peters, T., Hetherington, N., Hyman, J., Kramer, B., Ginn, S. L., Ruan, X., Ranganathan, S., Buckley, M., Bushman, F. D. & Alexander, I. E., Aug 2013, In : Journal of Gene Medicine. 15, 8-9, p. 315-316 2 p.

Research output: Contribution to journalMeeting abstractResearch

Database on neurotoxins from snakes

Joyce, S. P. Y., Steffanie, K. C. Y., Ramkishen, P. N., Armugam, A., Ranganathan, S. & Jeyaseelan, K., Dec 2003, In : Journal of Neurochemistry. 87, S1, p. 139-139 1 p.

Research output: Contribution to journalMeeting abstractResearchpeer-review

Generation and analysis of a highly complex γ-retroviral vector integration site dataset from human CD34+ cells using illumina next-generation sequencing

Hallwirth, C. V., Hyman, J., Garg, G., Ruan, X., Veeravalli, L., Kramer, B., Shahab, A., Ong, C. T., Liddle, C., Ranganathan, S., Russell, D. W., Wei, C-L. & Alexander, I. E., 2011, In : Journal of Gene Medicine. 13, 7-8, p. 430-431 2 p.

Research output: Contribution to journalMeeting abstractResearch

Other journal contribution

Meeting report from the second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop

Kettner, C., Field, D., Sansone, S. A., Taylor, C., Aerts, J., Binns, N., Blake, A., Britten, C. M., Marco, A., Fostel, J., Gaudet, P., González-Beltrán, A., Hardy, N., Hellemans, J., Hermjakob, H., Juty, N., Leebens-Mack, J., Maguire, E., Neumann, S., Orchard, S. & 9 othersParkinson, H., Piel, W., Ranganathan, S., Rocca-Serra, P., Santarsiero, A., Shotton, D., Sterk, P., Untergasser, A. & Whetzel, P. L., 31 Dec 2010, In : Standards in Genomic Sciences. 3, 3, p. 259-266 8 p.

Research output: Contribution to journalOther journal contributionResearch

Open Access
File
Checklist
Education
Workflow
Practice Guidelines
Germany
Review article

Accelerating the search for the missing proteins in the human proteome

Baker, M. S., Ahn, S. B., Mohamedali, A., Islam, M. T., Cantor, D., Verhaert, P. D., Fanayan, S., Sharma, S., Nice, E. C., Connor, M. & Ranganathan, S., 24 Jan 2017, In : Nature Communications. 8, p. 1-13 13 p., 14271.

Research output: Contribution to journalReview articleResearchpeer-review

Open Access
File
proteome
Proteome
proteins
Proteins
genome

A common site within factor H SCR 7 responsible for binding heparin, C-reactive protein and streptococcal M protein

Giannakis, E., Jokiranta, T. S., Male, D. A., Ranganathan, S., Ormsby, R. J., Fischetti, V. A., Mold, C. & Gordon, D. L., 1 Apr 2003, In : European Journal of Immunology. 33, 4, p. 962-969 8 p.

Research output: Contribution to journalReview articleResearchpeer-review

Complement Factor H
C-Reactive Protein
Heparin
Complement Inactivating Agents
Vaccinia

Advanced in silico analysis of expressed sequence tag (EST) data for parasitic nematodes of major socio-economic importance - Fundamental insights toward biotechnological outcomes

Ranganathan, S., Menon, R. & Gasser, R. B., Jul 2009, In : Biotechnology Advances. 27, 4, p. 439-448 10 p.

Research output: Contribution to journalReview articleResearchpeer-review

Expressed Sequence Tags
Computer Simulation
Genes
Economics
Genome

Applications of machine learning in GPCR bioactive ligand discovery

Jabeen, A. & Ranganathan, S., Apr 2019, In : Current Opinion in Structural Biology. 55, p. 66-76 11 p.

Research output: Contribution to journalReview articleResearchpeer-review

Odorant Receptors
Ligands
Drug Discovery
Chemical Databases
Drug Industry

Bioinformatics meets parasitology

Cantacessi, C., Campbell, B. E., Jex, A. R., Young, N. D., Hall, R. S., Ranganathan, S. & Gasser, R. B., May 2012, In : Parasite Immunology. 34, 5, p. 265-275 11 p.

Research output: Contribution to journalReview articleResearchpeer-review

Parasitology
Computational Biology
Parasites
Technology
Transcriptome

Clinically relevant post-translational modification analyses: maturing workflows and bioinformatics tools

Pascovici, D., Wu, J. X., McKay, M. J., Joseph, C., Noor, Z., Kamath, K., Wu, Y., Ranganathan, S., Gupta, V. & Mirzaei, M., 1 Jan 2019, In : International Journal of Molecular Sciences. 20, 1, p. 1-30 30 p., 16.

Research output: Contribution to journalReview articleResearchpeer-review

Open Access
File
Workflow
Post Translational Protein Processing
Bioinformatics
Computational Biology
Proteins

Deep insights into Dictyocaulus viviparus transcriptomes provides unique prospects for new drug targets and disease intervention

Cantacessi, C., Gasser, R. B., Strube, C., Schnieder, T., Jex, A. R., Hall, R. S., Campbell, B. E., Young, N. D., Ranganathan, S., Sternberg, P. W. & Mitreva, M., May 2011, In : Biotechnology Advances. 29, 3, p. 261-271 11 p.

Research output: Contribution to journalReview articleResearchpeer-review

Dictyocaulus
Transcriptome
Protein-Serine-Threonine Kinases
Proteins
Nucleoplasmins

Improved insights into the transcriptomes of the human hookworm Necator americanus - Fundamental and biotechnological implications

Rabelo, E. M., Hall, R. S., Loukas, A., Cooper, L., Hu, M., Ranganathan, S. & Gasser, R. B., Mar 2009, In : Biotechnology Advances. 27, 2, p. 122-132 11 p.

Research output: Contribution to journalReview articleResearchpeer-review

Necator americanus
Ancylostomatoidea
Vaccines
Transcriptome
Molecular biology

Molecular similarity and diversity approaches in chemoinformatics

Khanna, V. & Ranganathan, S., Feb 2011, In : Drug Development Research. 72, 1, p. 74-84 11 p.

Research output: Contribution to journalReview articleResearchpeer-review

Libraries
Digital Libraries
Drug Discovery
Computer Simulation
Pharmacokinetics

Oesophagostomum dentatum - Potential as a model for genomic studies of strongylid nematodes, with biotechnological prospects

Gasser, R. B., Cottee, P., Nisbet, A. J., Ruttkowski, B., Ranganathan, S. & Joachim, A., May 2007, In : Biotechnology Advances. 25, 3, p. 281-293 13 p.

Research output: Contribution to journalReview articleResearchpeer-review

Oesophagostomum
Double-Stranded RNA
Strongylida
Swine
Genes

Quest for missing proteins: update 2015 on chromosome-centric human proteome project

Horvatovich, P., Lundberg, E. K., Chen, Y. J., Sung, T. Y., He, F., Nice, E. C., Goode, R. J., Yu, S., Ranganathan, S., Baker, M. S., Domont, G. B., Velasquez, E., Li, D., Liu, S., Wang, Q., He, Q. Y., Menon, R., Guan, Y., Corrales, F. J., Segura, V. & 34 othersCasal, J. I., Pascual-Montano, A., Albar, J. P., Fuentes, M., Gonzalez-Gonzalez, M., Diez, P., Ibarrola, N., Degano, R. M., Mohammed, Y., Borchers, C. H., Urbani, A., Soggiu, A., Yamamoto, T., Salekdeh, G. H., Archakov, A., Ponomarenko, E., Lisitsa, A., Lichti, C. F., Mostovenko, E., Kroes, R. A., Rezeli, M., Végvári, Á., Fehniger, T. E., Bischoff, R., Vizcaíno, J. A., Deutsch, E. W., Lane, L., Nilsson, C. L., Marko-Varga, G., Omenn, G. S., Jeong, S. K., Lim, J. S., Paik, Y. K. & Hancock, W. S., 4 Sep 2015, In : Journal of Proteome Research. 14, 9, p. 3415-3431 17 p.

Research output: Contribution to journalReview articleResearchpeer-review

Human Chromosomes
Proteome
Chromosomes
Posters
Proteins

Secretome: Clues into pathogen infection and clinical applications

Ranganathan, S. & Garg, G., 30 Nov 2009, In : Genome Medicine. 1, 11, p. 1-7 7 p., 113.

Research output: Contribution to journalReview articleResearchpeer-review

Infection
Host-Pathogen Interactions
Proteins
Drug Discovery
Immune System

Structural bioinformatics analysis of variants on GPCR function

Syed Haneef, S. A. & Ranganathan, S., Apr 2019, In : Current Opinion in Structural Biology. 55, p. 161-177 17 p.

Research output: Contribution to journalReview articleResearchpeer-review

Cannabinoid Receptors
G-Protein-Coupled Receptors
Computational Biology
Endocannabinoids
Precision Medicine

Systems proteomics view of the endogenous human claudin protein family

Liu, F., Koval, M., Ranganathan, S., Fanayan, S., Hancock, W. S., Lundberg, E. K., Beavis, R. C., Lane, L., Duek, P., McQuade, L., Kelleher, N. L. & Baker, M. S., 5 Feb 2016, In : Journal of Proteome Research. 15, 2, p. 339-359 21 p.

Research output: Contribution to journalReview articleResearchpeer-review

Claudins
Proteomics
Proteins
Tissue
Tight Junction Proteins