• 5268 Citations
  • 37 h-Index
1980 …2021
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Research Outputs 1980 2019

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Review article
2019

Applications of machine learning in GPCR bioactive ligand discovery

Jabeen, A. & Ranganathan, S., Apr 2019, In : Current Opinion in Structural Biology. 55, p. 66-76 11 p.

Research output: Contribution to journalReview articleResearchpeer-review

Odorant Receptors
Ligands
Drug Discovery
Chemical Databases
Drug Industry

Clinically relevant post-translational modification analyses: maturing workflows and bioinformatics tools

Pascovici, D., Wu, J. X., McKay, M. J., Joseph, C., Noor, Z., Kamath, K., Wu, Y., Ranganathan, S., Gupta, V. & Mirzaei, M., 1 Jan 2019, In : International Journal of Molecular Sciences. 20, 1, p. 1-30 30 p., 16.

Research output: Contribution to journalReview articleResearchpeer-review

Open Access
File
Workflow
Post Translational Protein Processing
Bioinformatics
Computational Biology
Proteins

Structural bioinformatics analysis of variants on GPCR function

Syed Haneef, S. A. & Ranganathan, S., Apr 2019, In : Current Opinion in Structural Biology. 55, p. 161-177 17 p.

Research output: Contribution to journalReview articleResearchpeer-review

Cannabinoid Receptors
G-Protein-Coupled Receptors
Computational Biology
Endocannabinoids
Precision Medicine
2017

Accelerating the search for the missing proteins in the human proteome

Baker, M. S., Ahn, S. B., Mohamedali, A., Islam, M. T., Cantor, D., Verhaert, P. D., Fanayan, S., Sharma, S., Nice, E. C., Connor, M. & Ranganathan, S., 24 Jan 2017, In : Nature Communications. 8, p. 1-13 13 p., 14271.

Research output: Contribution to journalReview articleResearchpeer-review

Open Access
File
proteome
Proteome
proteins
Proteins
genome
2016

Systems proteomics view of the endogenous human claudin protein family

Liu, F., Koval, M., Ranganathan, S., Fanayan, S., Hancock, W. S., Lundberg, E. K., Beavis, R. C., Lane, L., Duek, P., McQuade, L., Kelleher, N. L. & Baker, M. S., 5 Feb 2016, In : Journal of Proteome Research. 15, 2, p. 339-359 21 p.

Research output: Contribution to journalReview articleResearchpeer-review

Claudins
Proteomics
Proteins
Tissue
Tight Junction Proteins
2015

Quest for missing proteins: update 2015 on chromosome-centric human proteome project

Horvatovich, P., Lundberg, E. K., Chen, Y. J., Sung, T. Y., He, F., Nice, E. C., Goode, R. J., Yu, S., Ranganathan, S., Baker, M. S., Domont, G. B., Velasquez, E., Li, D., Liu, S., Wang, Q., He, Q. Y., Menon, R., Guan, Y., Corrales, F. J., Segura, V. & 34 othersCasal, J. I., Pascual-Montano, A., Albar, J. P., Fuentes, M., Gonzalez-Gonzalez, M., Diez, P., Ibarrola, N., Degano, R. M., Mohammed, Y., Borchers, C. H., Urbani, A., Soggiu, A., Yamamoto, T., Salekdeh, G. H., Archakov, A., Ponomarenko, E., Lisitsa, A., Lichti, C. F., Mostovenko, E., Kroes, R. A., Rezeli, M., Végvári, Á., Fehniger, T. E., Bischoff, R., Vizcaíno, J. A., Deutsch, E. W., Lane, L., Nilsson, C. L., Marko-Varga, G., Omenn, G. S., Jeong, S. K., Lim, J. S., Paik, Y. K. & Hancock, W. S., 4 Sep 2015, In : Journal of Proteome Research. 14, 9, p. 3415-3431 17 p.

Research output: Contribution to journalReview articleResearchpeer-review

Human Chromosomes
Proteome
Chromosomes
Posters
Proteins
2012

Bioinformatics meets parasitology

Cantacessi, C., Campbell, B. E., Jex, A. R., Young, N. D., Hall, R. S., Ranganathan, S. & Gasser, R. B., May 2012, In : Parasite Immunology. 34, 5, p. 265-275 11 p.

Research output: Contribution to journalReview articleResearchpeer-review

Parasitology
Computational Biology
Parasites
Technology
Transcriptome
2011

Deep insights into Dictyocaulus viviparus transcriptomes provides unique prospects for new drug targets and disease intervention

Cantacessi, C., Gasser, R. B., Strube, C., Schnieder, T., Jex, A. R., Hall, R. S., Campbell, B. E., Young, N. D., Ranganathan, S., Sternberg, P. W. & Mitreva, M., May 2011, In : Biotechnology Advances. 29, 3, p. 261-271 11 p.

Research output: Contribution to journalReview articleResearchpeer-review

Dictyocaulus
Transcriptome
Protein-Serine-Threonine Kinases
Proteins
Nucleoplasmins

Molecular similarity and diversity approaches in chemoinformatics

Khanna, V. & Ranganathan, S., Feb 2011, In : Drug Development Research. 72, 1, p. 74-84 11 p.

Research output: Contribution to journalReview articleResearchpeer-review

Libraries
Digital Libraries
Drug Discovery
Computer Simulation
Pharmacokinetics
2009

Advanced in silico analysis of expressed sequence tag (EST) data for parasitic nematodes of major socio-economic importance - Fundamental insights toward biotechnological outcomes

Ranganathan, S., Menon, R. & Gasser, R. B., Jul 2009, In : Biotechnology Advances. 27, 4, p. 439-448 10 p.

Research output: Contribution to journalReview articleResearchpeer-review

Expressed Sequence Tags
Computer Simulation
Genes
Economics
Genome

Improved insights into the transcriptomes of the human hookworm Necator americanus - Fundamental and biotechnological implications

Rabelo, E. M., Hall, R. S., Loukas, A., Cooper, L., Hu, M., Ranganathan, S. & Gasser, R. B., Mar 2009, In : Biotechnology Advances. 27, 2, p. 122-132 11 p.

Research output: Contribution to journalReview articleResearchpeer-review

Necator americanus
Ancylostomatoidea
Vaccines
Transcriptome
Molecular biology

Secretome: Clues into pathogen infection and clinical applications

Ranganathan, S. & Garg, G., 30 Nov 2009, In : Genome Medicine. 1, 11, p. 1-7 7 p., 113.

Research output: Contribution to journalReview articleResearchpeer-review

Infection
Host-Pathogen Interactions
Proteins
Drug Discovery
Immune System
2007

Oesophagostomum dentatum - Potential as a model for genomic studies of strongylid nematodes, with biotechnological prospects

Gasser, R. B., Cottee, P., Nisbet, A. J., Ruttkowski, B., Ranganathan, S. & Joachim, A., May 2007, In : Biotechnology Advances. 25, 3, p. 281-293 13 p.

Research output: Contribution to journalReview articleResearchpeer-review

Oesophagostomum
Double-Stranded RNA
Strongylida
Swine
Genes
2003

A common site within factor H SCR 7 responsible for binding heparin, C-reactive protein and streptococcal M protein

Giannakis, E., Jokiranta, T. S., Male, D. A., Ranganathan, S., Ormsby, R. J., Fischetti, V. A., Mold, C. & Gordon, D. L., 1 Apr 2003, In : European Journal of Immunology. 33, 4, p. 962-969 8 p.

Research output: Contribution to journalReview articleResearchpeer-review

Complement Factor H
C-Reactive Protein
Heparin
Complement Inactivating Agents
Vaccinia