Xiaomin Song

Dr

  • 893 Citations
  • 13 h-Index
20072020

Research output per year

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Research Outputs

  • 893 Citations
  • 13 h-Index
  • 24 Article
  • 1 Chapter
  • 1 Meeting abstract
2020

NIST interlaboratory study on glycosylation analysis of monoclonal antibodies: comparison of results from diverse analytical methods

De Leoz, M. L. A., Duewer, D. L., Fung, A., Liu, L., Yau, H. K., Potter, O., Staples, G. O., Furuki, K., Frenkel, R., Hu, Y., Sosic, Z., Zhang, P., Altmann, F., Grünwald-Grube, C., Shao, C., Zaia, J., Evers, W., Pengelley, S., Suckau, D., Wiechmann, A. & 142 others, Resemann, A., Jabs, W., Beck, A., Froehlich, J. W., Huang, C., Li, Y., Liu, Y., Sun, S., Wang, Y., Seo, Y., An, H. J., Reichardt, N. C., Ruiz, J. E., Archer-Hartmann, S., Azadi, P., Bell, L., Lakos, Z., An, Y., Cipollo, J. F., Pucic-Bakovic, M., Štambuk, J., Lauc, G., Li, X., Wang, P. G., Bock, A., Hennig, R., Rapp, E., Creskey, M., Cyr, T. D., Nakano, M., Sugiyama, T., Leung, P-K. A., Link-Lenczowski, P., Jaworek, J., Yang, S., Zhang, H., Kelly, T., Klapoetke, S., Cao, R., Kim, J. Y., Lee, H. K., Lee, J. Y., Yoo, J. S., Kim, S-R., Suh, S-K., de Haan, N., Falck, D., Lageveen-Kammeijer, G. S. M., Wuhrer, M., Emery, R. J., Kozak, R. P., Liew, L. P., Royle, L., Urbanowicz, P. A., Packer, N. H., Song, X., Everest-Dass, A., Lattová, E., Cajic, S., Alagesan, K., Kolarich, D., Kasali, T., Lindo, V., Chen, Y., Goswami, K., Gau, B., Amunugama, R., Jones, R., Stroop, C. J. M., Kato, K., Yagi, H., Kondo, S., Yuen, C. T., Harazono, A., Shi, X., Magnelli, P. E., Kasper, B. T., Mahal, L., Harvey, D. J., O'Flaherty, R., Rudd, P. M., Saldova, R., Hecht, E. S., Muddiman, D. C., Kang, J., Bhoskar, P., Menard, D., Saati, A., Merle, C., Mast, S., Tep, S., Truong, J., Nishikaze, T., Sekiya, S., Shafer, A., Funaoka, S., Toyoda, M., de Vreugd, P., Caron, C., Pradhan, P., Tan, N. C., Mechref, Y., Patil, S., Rohrer, J. S., Chakrabarti, R., Dadke, D., Lahori, M., Zou, C., Cairo, C., Reiz, B., Whittal, R. M., Lebrilla, C. B., Wu, L., Guttman, A., Szigeti, M., Kremkow, B. G., Lee, K. H., Sihlbom, C., Adamczyk, B., Jin, C., Karlsson, N. G., Örnros, J., Larson, G., Nilsson, J., Meyer, B., Wiegandt, A., Komatsu, E., Perreault, H., Bodnar, E. D., Said, N., Francois, Y-N., Leize-Wagner, E., Maier, S., Zeck, A., Heck, A. J. R., Yang, Y., Haselberg, R., Yu, Y. Q., Alley, W., Leone, J. W., Yuan, H. & Stein, S. E., Jan 2020, In : Molecular and Cellular Proteomics. 19, 1, p. 11-30 20 p.

Research output: Contribution to journalArticle

Open Access
File
6 Citations (Scopus)
19 Downloads (Pure)
2019

Practical integration of multi-run iTRAQ data

Pascovici, D., Song, X., Wu, J., Zaw, T. & Molloy, M., 2019, Mass spectrometry of proteins: methods and protocols. Evans, C. A., Wright, P. C. & Noirel, J. (eds.). New York: Humana Press, p. 199-215 17 p. (Methods in Molecular Biology; vol. 1977).

Research output: Chapter in Book/Report/Conference proceedingChapter

2018

Systems-based approaches enable identification of gene targets which improve the flavour profile of low-ethanol wine yeast strains

Varela, C., Schmidt, S. A., Borneman, A. R., Pang, C. N. I., Krömerx, J. O., Khan, A., Song, X., Hodson, M. P., Solomon, M., Mayr, C. M., Hines, W., Pretorius, I. S., Baker, M. S., Roessner, U., Mercurio, M., Henschke, P. A., Wilkins, M. R. & Chambers, P. J., 1 Sep 2018, In : Metabolic Engineering. 49, p. 178-191 14 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)
2017

Improving protein detection confidence using SWATH-Mass spectrometry with large peptide reference libraries

Wu, J. X., Pascovici, D., Ignjatovic, V., Song, X., Krisp, C. & Molloy, M. P., 9 Oct 2017, In : Proteomics. 17, 19, p. 1-5 5 p., 1700174.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Quantitative age-specific variability of plasma proteins in healthy neonates, children and adults

Bjelosevic, S., Pascovici, D., Ping, H., Karlaftis, V., Zaw, T., Song, X., Molloy, M. P., Monagle, P. & Ignjatovic, V., 1 May 2017, In : Molecular and Cellular Proteomics. 16, 5, p. 924-935 12 p.

Research output: Contribution to journalArticle

18 Citations (Scopus)
2016

Analytical performance of nano-LC-SRM using nondepleted human plasma over an 18-month period

Song, X., Amirkhani, A., Wu, J. X., Pascovici, D., Zaw, T., Xavier, D., Clarke, S. J. & Molloy, M. P., 1 Aug 2016, In : Proteomics. 16, 15-16, p. 2118-2127 10 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Characterisation of the immune compounds in koala milk using a combined transcriptomic and proteomic approach

Morris, K. M., O'Meally, D., Zaw, T., Song, X., Gillett, A., Molloy, M. P., Polkinghorne, A. & Belov, K., 7 Oct 2016, In : Scientific Reports. 6, p. 1-14 14 p., 35011.

Research output: Contribution to journalArticle

Open Access
File
7 Citations (Scopus)
36 Downloads (Pure)

Co-immunoprecipitation with Tau isoform-specific antibodies reveals distinct protein interactions and highlights a putative role for 2N Tau in disease

Liu, C., Song, X., Nisbet, R. & Götz, J., 8 Apr 2016, In : Journal of Biological Chemistry. 291, 15, p. 8173-8188 16 p.

Research output: Contribution to journalArticle

Open Access
File
50 Citations (Scopus)
27 Downloads (Pure)

Proteogenomics of a saxitoxin-producing and non-toxic strain of Anabaena circinalis (cyanobacteria) in response to extracellular NaCl and phosphate depletion

D'Agostino, P. M., Song, X., Neilan, B. A. & Moffitt, M. C., Feb 2016, In : Environmental microbiology. 18, 2, p. 461-476 16 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

SWATH mass spectrometry performance using extended peptide MS/MS assay libraries

Wu, J. X., Song, X., Pascovici, D., Zaw, T., Care, N., Krisp, C. & Molloy, M. P., 1 Jul 2016, In : Molecular and Cellular Proteomics. 15, 7, p. 2501-2514 14 p.

Research output: Contribution to journalArticle

54 Citations (Scopus)
2015
4 Citations (Scopus)

Combining protein ratio p -values as a pragmatic approach to the analysis of multirun iTRAQ experiments

Pascovici, D., Song, X., Solomon, P. S., Winterberg, B., Mirzaei, M., Goodchild, A., Stanley, W. C., Liu, J. & Molloy, M. P., 6 Feb 2015, In : Journal of Proteome Research. 14, 2, p. 738-746 9 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

The mannose-6-phosphate analogue, PXS64, inhibits fibrosis via TGF-β1 pathway in human lung fibroblasts

Schilter, H., Cantemir-Stone, C. Z., Leksa, V., Ohradanova-Repic, A., Findlay, A. D., Deodhar, M., Stockinger, H., Song, X., Molloy, M., Marsh, C. B. & Jarolimek, W., 1 Jun 2015, In : Immunology Letters. 165, 2, p. 90-101 12 p.

Research output: Contribution to journalArticle

Open Access
File
8 Citations (Scopus)
18 Downloads (Pure)
2014

Altered proteostasis in aging and heat shock response in C. elegans revealed by analysis of the global and de novo synthesized proteome

Liang, V., Ullrich, M., Lam, H., Chew, Y. L., Banister, S., Song, X., Zaw, T., Kassiou, M., Gotz, J. & Nicholas, H. R., Sep 2014, In : Cellular and Molecular Life Sciences. 71, 17, p. 3339-3361 23 p.

Research output: Contribution to journalArticle

Open Access
File
43 Citations (Scopus)

Bio-orthogonal labeling as a tool to visualize and identify newly synthesized proteins in Caenorhabditis elegans

Ullrich, M., Liang, V., Götz, J., Chew, Y. L., Banister, S., Song, X., Zaw, T., Lam, H., Berber, S., Kassiou, M. & Nicholas, H. R., Sep 2014, In : Nature Protocols. 9, 9, p. 2237-2255 19 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)

Comparative proteomics reveals that a saxitoxin-producing and a nontoxic strain of Anabaena circinalis are two different ecotypes

D'Agostino, P. M., Song, X., Neilan, B. A. & Moffitt, M. C., 7 Mar 2014, In : Journal of Proteome Research. 13, 3, p. 1474-1484 11 p.

Research output: Contribution to journalArticle

25 Citations (Scopus)

The necrotrophic effector protein SnTox3 re-programs metabolism and elicits a strong defence response in susceptible wheat leaves

Winterberg, B., Du Fall, L. A., Song, X., Pascovici, D., Care, N., Molloy, M., Ohms, S. & Solomon, P. S., 15 Aug 2014, In : BMC Plant Biology. 14, p. 1-15 15 p., 215.

Research output: Contribution to journalArticle

Open Access
File
21 Citations (Scopus)
22 Downloads (Pure)
2013

A Protein annotation framework empowered with semantic reasoning

Wu, J. X., Breen, E. J., Song, X., Cooke, B. & Molloy, M. P., 2013, In : CEUR Workshop Proceedings. 1035, p. 185-188 4 p.

Research output: Contribution to journalArticle

Coverage and consistency: Bioinformatics aspects of the analysis of multirun iTRAQ experiments with wheat leaves

Pascovici, D., Gardiner, D. M., Song, X., Breen, E., Solomon, P. S., Keighley, T. & Molloy, M. P., 1 Nov 2013, In : Journal of Proteome Research. 12, 11, p. 4870-4881 12 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Novel plasma proteins associated with prognosis in malignant pleural mesothelioma

Kao, S. C., Kirschner, M. B., Amirkhani, A., Pascovici, D., Song, X., Harvie, R., Pavlakis, N., Clarke, S., Molloy, M. P., Van Zandwijk, N. & Reid, G., Nov 2013, In : Journal of Thoracic Oncology. 8, 11S2, p. S787-S787 1 p.

Research output: Contribution to journalMeeting abstract

2012

Molecular signatures of long-lived proteins: autolytic cleavage adjacent to serine residues

Su, S-P., Lyons, B., Friedrich, M., McArthur, J. D., Song, X., Xavier, D., Truscott, R. J. W. & Aquilina, J. A., 2012, In : Aging Cell. 11, 6, p. 1125-1127 3 p.

Research output: Contribution to journalArticle

15 Citations (Scopus)

Pilot application of iTRAQ to the retinal disease macular telangiectasia

Len, A. C. L., Powner, M. B., Zhu, L., Hageman, G. S., Song, X., Fruttiger, M. & Gillies, M. C., 2012, In : Journal of Proteome Research. 11, 2, p. 537-553 17 p.

Research output: Contribution to journalArticle

17 Citations (Scopus)
2011

Proteomic comparison of colorectal tumours and non-neoplastic mucosa from paired patient samples using iTRAQ mass spectrometry

Jankova, L., Chan, C., Fung, C. L. S., Song, X., Kwun, S. Y., Cowley, M. J., Kaplan, W., Dent, O. F., Bokey, E. L., Chapuis, P. H., Baker, M. S., Robertson, G. R., Clarke, S. J. & Molloy, M. P., 1 Nov 2011, In : Molecular BioSystems. 7, 11, p. 2997-3005 9 p.

Research output: Contribution to journalArticle

25 Citations (Scopus)
2009

Amyloid-beta and tau synergistically impair the oxidative phosphorylation system in triple transgenic Alzheimer's disease mice

Rhein, V., Song, X., Weisner, A., Ittner, L. M., Baysang, G., Meier, F., Ozmen, L., Bleuthmann, H., Droese, S., Brandt, U., Savaskan, E., Czech, C., Goetz, J. & Eckert, A., 2009, In : Proceedings of the National Academy of Sciences of the United States of America. 106, 47, p. 20057-20062 6 p.

Research output: Contribution to journalArticle

406 Citations (Scopus)
2008

iTRAQ experimental design for plasma biomarker discovery

Song, X., Bandow, J., Sherman, J., David Baker, J., Brown, P. W., McDowell, M. T. & Molloy, M. P., Jul 2008, In : Journal of Proteome Research. 7, 7, p. 2952-2958 7 p.

Research output: Contribution to journalArticle

88 Citations (Scopus)
2007

Proteomic identification of lynchpin urokinase plasminogen activator receptor protein interactions associated with epithelial cancer malignancy

Saldanha, R. G., Molloy, M. P., Bdeir, K., Cines, D. B., Song, X., Uitto, P. M., Weinreb, P. H., Violette, S. M. & Baker, M. S., Mar 2007, In : Journal of Proteome Research. 6, 3, p. 1016-1028 13 p.

Research output: Contribution to journalArticle

35 Citations (Scopus)