Xiaomin Song

Dr

  • 801 Citations
  • 12 h-Index
20072019
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Research Outputs 2007 2019

  • 801 Citations
  • 12 h-Index
  • 23 Article
  • 1 Chapter
  • 1 Meeting abstract
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Article
2018

Systems-based approaches enable identification of gene targets which improve the flavour profile of low-ethanol wine yeast strains

Varela, C., Schmidt, S. A., Borneman, A. R., Pang, C. N. I., Krömerx, J. O., Khan, A., Song, X., Hodson, M. P., Solomon, M., Mayr, C. M., Hines, W., Pretorius, I. S., Baker, M. S., Roessner, U., Mercurio, M., Henschke, P. A., Wilkins, M. R. & Chambers, P. J., 1 Sep 2018, In : Metabolic Engineering. 49, p. 178-191 14 p.

Research output: Contribution to journalArticleResearchpeer-review

Wine
Flavors
Yeast
Ethanol
Genes
2017

Improving protein detection confidence using SWATH-Mass spectrometry with large peptide reference libraries

Wu, J. X., Pascovici, D., Ignjatovic, V., Song, X., Krisp, C. & Molloy, M. P., 9 Oct 2017, In : Proteomics. 17, 19, p. 1-5 5 p., 1700174.

Research output: Contribution to journalArticleResearchpeer-review

Peptide Library
Libraries
Mass spectrometry
Workflow
Mass Spectrometry

Quantitative age-specific variability of plasma proteins in healthy neonates, children and adults

Bjelosevic, S., Pascovici, D., Ping, H., Karlaftis, V., Zaw, T., Song, X., Molloy, M. P., Monagle, P. & Ignjatovic, V., 1 May 2017, In : Molecular and Cellular Proteomics. 16, 5, p. 924-935 12 p.

Research output: Contribution to journalArticleResearchpeer-review

Blood Proteins
Newborn Infant
Proteins
Plasmas
Proteomics
2016

Analytical performance of nano-LC-SRM using nondepleted human plasma over an 18-month period

Song, X., Amirkhani, A., Wu, J. X., Pascovici, D., Zaw, T., Xavier, D., Clarke, S. J. & Molloy, M. P., 1 Aug 2016, In : Proteomics. 16, 15-16, p. 2118-2127 10 p.

Research output: Contribution to journalArticleResearchpeer-review

Plasma (human)
Biomarkers
Ions
Plasmas
Labels

Characterisation of the immune compounds in koala milk using a combined transcriptomic and proteomic approach

Morris, K. M., O'Meally, D., Zaw, T., Song, X., Gillett, A., Molloy, M. P., Polkinghorne, A. & Belov, K., 7 Oct 2016, In : Scientific Reports. 6, p. 1-14 14 p., 35011.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Phascolarctidae
Proteomics
Marsupialia
Milk
Lactation

Co-immunoprecipitation with Tau isoform-specific antibodies reveals distinct protein interactions and highlights a putative role for 2N Tau in disease

Liu, C., Song, X., Nisbet, R. & Götz, J., 8 Apr 2016, In : Journal of Biological Chemistry. 291, 15, p. 8173-8188 16 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Immunoprecipitation
Protein Isoforms
tau Proteins
beta-Synuclein
Antibodies

Proteogenomics of a saxitoxin-producing and non-toxic strain of Anabaena circinalis (cyanobacteria) in response to extracellular NaCl and phosphate depletion

D'Agostino, P. M., Song, X., Neilan, B. A. & Moffitt, M. C., Feb 2016, In : Environmental microbiology. 18, 2, p. 461-476 16 p.

Research output: Contribution to journalArticleResearchpeer-review

Anabaena circinalis
Saxitoxin
Anabaena
saxitoxins
Cyanobacteria

SWATH mass spectrometry performance using extended peptide MS/MS assay libraries

Wu, J. X., Song, X., Pascovici, D., Zaw, T., Care, N., Krisp, C. & Molloy, M. P., 1 Jul 2016, In : Molecular and Cellular Proteomics. 15, 7, p. 2501-2514 14 p.

Research output: Contribution to journalArticleResearchpeer-review

Libraries
Mass spectrometry
Assays
Mass Spectrometry
Peptides
2015

Age-related cleavages of crystallins in human lens cortical fiber cells generate a plethora of endogenous peptides and high molecular weight complexes

Su, S-P., Song, X., Xavier, D. & Aquilina, J. A., 2015, In : Proteins : structure, function and bioinformatics. 83, 10, p. 1878-1886 9 p.

Research output: Contribution to journalArticleResearchpeer-review

Crystallins
Lenses
Molecular Weight
Peptides
Proteins

Combining protein ratio p -values as a pragmatic approach to the analysis of multirun iTRAQ experiments

Pascovici, D., Song, X., Solomon, P. S., Winterberg, B., Mirzaei, M., Goodchild, A., Stanley, W. C., Liu, J. & Molloy, M. P., 6 Feb 2015, In : Journal of Proteome Research. 14, 2, p. 738-746 9 p.

Research output: Contribution to journalArticleResearchpeer-review

Proteins
Experiments
Peptides
Z transforms
Statistical Models

The mannose-6-phosphate analogue, PXS64, inhibits fibrosis via TGF-β1 pathway in human lung fibroblasts

Schilter, H., Cantemir-Stone, C. Z., Leksa, V., Ohradanova-Repic, A., Findlay, A. D., Deodhar, M., Stockinger, H., Song, X., Molloy, M., Marsh, C. B. & Jarolimek, W., 1 Jun 2015, In : Immunology Letters. 165, 2, p. 90-101 12 p.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Fibrosis
Fibroblasts
Lung
Idiopathic Pulmonary Fibrosis
Collagen
2014

Altered proteostasis in aging and heat shock response in C. elegans revealed by analysis of the global and de novo synthesized proteome

Liang, V., Ullrich, M., Lam, H., Chew, Y. L., Banister, S., Song, X., Zaw, T., Kassiou, M., Gotz, J. & Nicholas, H. R., 2014, In : Cellular and molecular life sciences. 71, 17, p. 3339-3361 23 p.

Research output: Contribution to journalArticleResearchpeer-review

Heat-Shock Response
Proteome
Homeostasis
Ribosomal Proteins
Proteins

Bio-orthogonal labeling as a tool to visualize and identify newly synthesized proteins in Caenorhabditis elegans

Ullrich, M., Liang, V., Götz, J., Chew, Y. L., Banister, S., Song, X., Zaw, T., Lam, H., Berber, S., Kassiou, M. & Nicholas, H. R., 2014, In : Nature Protocols. 9, 9, p. 2237-2255 19 p.

Research output: Contribution to journalArticleResearchpeer-review

Caenorhabditis elegans Proteins
Labeling
Click Chemistry
Proteins
Fluorescent Antibody Technique

Comparative proteomics reveals that a saxitoxin-producing and a nontoxic strain of Anabaena circinalis are two different ecotypes

D'Agostino, P. M., Song, X., Neilan, B. A. & Moffitt, M. C., 2014, In : Journal of Proteome Research. 13, 3, p. 1474-1484 11 p.

Research output: Contribution to journalArticleResearchpeer-review

Saxitoxin
Anabaena
Ecotype
Proteomics
Poisons

The necrotrophic effector protein SnTox3 re-programs metabolism and elicits a strong defence response in susceptible wheat leaves

Winterberg, B., Du Fall, L. A., Song, X., Pascovici, D., Care, N., Molloy, M., Ohms, S. & Solomon, P. S., 15 Aug 2014, In : BMC Plant Biology. 14, p. 1-15 15 p., 215.

Research output: Contribution to journalArticleResearchpeer-review

Open Access
File
Leptosphaeria nodorum
Triticum
wheat
metabolism
homocysteine
2013

A Protein annotation framework empowered with semantic reasoning

Wu, J. X., Breen, E. J., Song, X., Cooke, B. & Molloy, M. P., 2013, In : CEUR Workshop Proceedings. 1035, p. 185-188 4 p.

Research output: Contribution to journalArticleResearchpeer-review

Semantics
Proteins
Ontology

Coverage and consistency: Bioinformatics aspects of the analysis of multirun iTRAQ experiments with wheat leaves

Pascovici, D., Gardiner, D. M., Song, X., Breen, E., Solomon, P. S., Keighley, T. & Molloy, M. P., 1 Nov 2013, In : Journal of Proteome Research. 12, 11, p. 4870-4881 12 p.

Research output: Contribution to journalArticleResearchpeer-review

Bioinformatics
Computational Biology
Triticum
Databases
Brachypodium
2012

Molecular signatures of long-lived proteins: autolytic cleavage adjacent to serine residues

Su, S-P., Lyons, B., Friedrich, M., McArthur, J. D., Song, X., Xavier, D., Truscott, R. J. W. & Aquilina, J. A., 2012, In : Aging Cell. 11, 6, p. 1125-1127 3 p.

Research output: Contribution to journalArticleResearchpeer-review

Serine
Peptides
Crystallins
Proteins
Lenses

Pilot application of iTRAQ to the retinal disease macular telangiectasia

Len, A. C. L., Powner, M. B., Zhu, L., Hageman, G. S., Song, X., Fruttiger, M. & Gillies, M. C., 2012, In : Journal of Proteome Research. 11, 2, p. 537-553 17 p.

Research output: Contribution to journalArticleResearchpeer-review

Retinal Diseases
Telangiectasis
Retina
Proteomics
Proteins
2011

Proteomic comparison of colorectal tumours and non-neoplastic mucosa from paired patient samples using iTRAQ mass spectrometry

Jankova, L., Chan, C., Fung, C. L. S., Song, X., Kwun, S. Y., Cowley, M. J., Kaplan, W., Dent, O. F., Bokey, E. L., Chapuis, P. H., Baker, M. S., Robertson, G. R., Clarke, S. J. & Molloy, M. P., 1 Nov 2011, In : Molecular BioSystems. 7, 11, p. 2997-3005 9 p.

Research output: Contribution to journalArticleResearchpeer-review

Proteomics
Colorectal Neoplasms
Mass Spectrometry
Mucous Membrane
Proteins
2009

Amyloid-beta and tau synergistically impair the oxidative phosphorylation system in triple transgenic Alzheimer's disease mice

Rhein, V., Song, X., Weisner, A., Ittner, L. M., Baysang, G., Meier, F., Ozmen, L., Bleuthmann, H., Droese, S., Brandt, U., Savaskan, E., Czech, C., Goetz, J. & Eckert, A., 2009, In : Proceedings of the National Academy of Sciences of USA. 106, 47, p. 20057-20062 6 p.

Research output: Contribution to journalArticleResearchpeer-review

Oxidative Phosphorylation
Amyloid
Alzheimer Disease
Proteomics
Transgenic Mice
2008

iTRAQ experimental design for plasma biomarker discovery

Song, X., Bandow, J., Sherman, J., David Baker, J., Brown, P. W., McDowell, M. T. & Molloy, M. P., Jul 2008, In : Journal of Proteome Research. 7, 7, p. 2952-2958 7 p.

Research output: Contribution to journalArticleResearchpeer-review

Biomarkers
Design of experiments
Research Design
Plasmas
Peptides
2007

Proteomic identification of lynchpin urokinase plasminogen activator receptor protein interactions associated with epithelial cancer malignancy

Saldanha, R. G., Molloy, M. P., Bdeir, K., Cines, D. B., Song, X., Uitto, P. M., Weinreb, P. H., Violette, S. M. & Baker, M. S., Mar 2007, In : Journal of Proteome Research. 6, 3, p. 1016-1028 13 p.

Research output: Contribution to journalArticleResearchpeer-review

Urokinase Plasminogen Activator Receptors
Proteomics
Plasminogen Activators
Urokinase-Type Plasminogen Activator
Integrins