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Author

  • Ian Paulsen
2017

Global gene expression profile of Acinetobacter baumannii during bacteremia

Murray, G. L., Tsyganov, K., Kostoulias, X. P., Bulach, D. M., Powell, D., Creek, D. J., Boyce, J. D., Paulsen, I. T. & Peleg, A. Y., 15 Feb 2017, In : The Journal of infectious diseases. 215, Suppl. 1, p. S52-S57 6 p.

Research output: Contribution to journalArticle

18 Citations (Scopus)

Characterization and vaccine potential of membrane vesicles produced by Francisella noatunensis subsp. orientalis in an adult zebrafish model

Lagos, L., Tandberg, J. I., Repnik, U., Boysen, P., Ropstad, E., Varkey, D., Paulsen, I. T. & Winther-Larsen, H. C., 1 May 2017, In : Clinical and Vaccine Immunology. 24, 5, p. 1-19 19 p., e00557-16.

Research output: Contribution to journalArticle

Open Access
13 Citations (Scopus)
2011

Bacterial subfamily of LuxR regulators that respond to plant compounds

Subramoni, S., Gonzalez, J. F., Johnson, A., Péchy-Tarr, M., Rochat, L., Paulsen, I., Loper, J. E., Keel, C. & Venturi, V., Jul 2011, In : Applied and Environmental Microbiology. 77, 13, p. 4579-4588 10 p.

Research output: Contribution to journalArticle

48 Citations (Scopus)
2012

pJIE137 carrying bla CTX-M-62 is closely related to p271A carrying bla NDM-1

Partridge, S. R., Paulsen, I. T. & Iredell, J. R., Apr 2012, In : Antimicrobial Agents and Chemotherapy. 56, 4, p. 2166-2168 3 p.

Research output: Contribution to journalArticle

19 Citations (Scopus)
2019
Open Access
File
12 Downloads (Pure)
2013

Genes expressed by the biological control bacterium Pseudomonas protegens Pf-5 on seed surfaces under the control of the global regulators GacA and RpoS

Kidarsa, T. A., Shaffer, B. T., Goebel, N. C., Roberts, D. P., Buyer, J. S., Johnson, A., Kobayashi, D. Y., Zabriskie, T. M., Paulsen, I. & Loper, J. E., Mar 2013, In : Environmental microbiology. 15, 3, p. 716-735 20 p.

Research output: Contribution to journalArticle

25 Citations (Scopus)
2014

Addition of Escherichia coli K-12 growth observation and gene essentiality data to the ecocyc database

Mackie, A., Paley, S., Keseler, I. M., Shearer, A., Paulsen, I. T. & Karp, P. D., Mar 2014, In : Journal of Bacteriology. 196, 5, p. 982-988 7 p.

Research output: Contribution to journalArticle

Open Access
File
6 Citations (Scopus)
1 Downloads (Pure)
2015

Proteomics of hosts and pathogens in cystic fibrosis

Kamath, K. S., Kumar, S. S., Kaur, J., Venkatakrishnan, V., Paulsen, I. T., Nevalainen, H. & Molloy, M. P., 1 Feb 2015, In : Proteomics - Clinical Applications. 9, 1-2, p. 134-146 13 p.

Research output: Contribution to journalReview article

8 Citations (Scopus)
2018

Ecological effects of cefepime use during antibiotic cycling on the Gram-negative enteric flora of ICU patients

Venturini, C., Ginn, A. N., Wilson, B. E., Tsafnat, G., Paulsen, I., Partridge, S. R. & Iredell, J. R., 27 Jul 2018, In : Intensive Care Medicine Experimental. 6, p. 1-7 7 p., 19.

Research output: Contribution to journalArticle

Open Access
File
7 Downloads (Pure)
2017

Effects of uranium concentration on microbial community structure and functional potential

Sutcliffe, B., Chariton, A. A., Harford, A. J., Hose, G. C., Greenfield, P., Elbourne, L. D. H., Oytam, Y., Stephenson, S., Midgley, D. J. & Paulsen, I. T., 1 Aug 2017, In : Environmental microbiology. 19, 8, p. 3323-3341 19 p.

Research output: Contribution to journalArticle

13 Citations (Scopus)
2015

Elucidating whole-genome design principles using synthetic genomics: The Yeast 2.0 project

Williams, T. C., Wightman, E. L. I., Daniel, E. L., Kroukamp, H., Nevalainen, H. K. M., Paulsen, I. T. & Pretorius, I. S., 2015, Proceedings of the 6th Australasian Conference on Yeast: Products and Discovery. Grbin, P. R. & Chambers, P. (eds.). 1 p. 3-1

Research output: Chapter in Book/Report/Conference proceedingConference abstract

2012

Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic

Allen, L. Z., Allen, E. E., Badger, J. H., McCrow, J. P., Paulsen, I. T., Elbourne, L. D., Thiagarajan, M., Rusch, D. B., Nealson, K. H., Williamson, S. J., Venter, J. C. & Allen, A. E., Jul 2012, In : ISME Journal. 6, 7, p. 1403-1414 12 p.

Research output: Contribution to journalArticle

69 Citations (Scopus)
2015

Defining the microbial effluxome in the content of the host-microbiome interaction

Ioannidis, A., Magana, M., Bologa, C. G., Oprea, T. I., Paulsen, I. T. & Tegos, G. P., 19 Feb 2015, In : Frontiers in Pharmacology. 6, p. 31-1-31-5 5 p., 31.

Research output: Contribution to journalEditorial

Open Access
File
12 Downloads (Pure)
2011

EcoCyc: a comprehensive database of Escherichia coli biology

Keseler, I. M., Collado-Vides, J., Santos-Zavaleta, A., Peralta-Gil, M., Gama-Castro, S., Muniz-Rascado, L., Bonavides-Martinez, C., Paley, S., Krummenacker, M., Altman, T., Kaipa, P., Spaulding, A., Pacheco, J., Latendresse, M., Fulcher, C., Sarker, M., Shearer, A. G., Mackie, A., Paulsen, I., Gunsalus, R. P. & 1 others, Karp, P. D., Jan 2011, In : Nucleic Acids Research. 39, SUPPL. 1, p. D583–D590 8 p.

Research output: Contribution to journalArticle

Open Access
File
312 Citations (Scopus)
2 Downloads (Pure)
2018

Blueprints for biosensors: design, limitations, and applications

Carpenter, A. C., Paulsen, I. T. & Williams, T. C., Aug 2018, In : Genes. 9, 8, p. 1-28 28 p., 375.

Research output: Contribution to journalArticle

Open Access
File
14 Citations (Scopus)
10 Downloads (Pure)
2014

A genome-scale metabolic flux model of Escherichia coli K-12 derived from the EcoCyc database

Weaver, D. S., Keseler, I. M., Mackie, A., Paulsen, I. T. & Karp, P. D., 30 Jun 2014, In : BMC Systems Biology. 8, p. 1-24 24 p., 79.

Research output: Contribution to journalArticle

Open Access
File
22 Citations (Scopus)
18 Downloads (Pure)
2012

Genomic Analysis Reveals Multiple [FeFe] Hydrogenases and Hydrogen Sensors Encoded by Treponemes from the H-2-Rich Termite Gut

Ballor, N. R., Paulsen, I. & Leadbetter, J. R., Feb 2012, In : Microbial Ecology. 63, 2, p. 282-294 13 p.

Research output: Contribution to journalArticle

17 Citations (Scopus)
2014

The Common Oceanographer: Crowdsourcing the Collection of Oceanographic Data

Lauro, F. M., Senstius, S. J., Cullen, J., Neches, R., Jensen, R. M., Brown, M. V., Darling, A. E., Givskov, M., McDougald, D., Hoeke, R., Ostrowski, M., Philip, G. K., Paulsen, I. T. & Grzymski, J. J., 2014, In : PLoS Biology. 12, 9, p. 1-5 5 p.

Research output: Contribution to journalArticle

Open Access
File
16 Citations (Scopus)
15 Downloads (Pure)
2013

Life in the dark: Metagenomic evidence that a microbial slime community is driven by inorganic nitrogen metabolism

Tetu, S. G., Breakwell, K., Elbourne, L. D. H., Holmes, A. J., Gillings, M. R. & Paulsen, I. T., Jun 2013, In : ISME Journal. 7, 6, p. 1227-1236 10 p.

Research output: Contribution to journalArticle

29 Citations (Scopus)
2017

Yeast's balancing act between ethanol and glycerol production in low-alcohol wines

Goold, H. D., Kroukamp, H., Williams, T. C., Paulsen, I. T., Varela, C. & Pretorius, I. S., 1 Mar 2017, In : Microbial Biotechnology. 10, 2, p. 264-278 15 p.

Research output: Contribution to journalReview article

Open Access
File
38 Citations (Scopus)
38 Downloads (Pure)
2015

Spatially extensive microbial biogeography of the Indian Ocean provides insights into the unique community structure of a pristine coral atoll

Jeffries, T. C., Ostrowski, M., Williams, R. B., Xie, C., Jensen, R. M., Grzymski, J. J., Senstius, S. J., Givskov, M., Hoeke, R., Philip, G. K., Neches, R. Y., Drautz-Moses, D. I., Chenard, C., Paulsen, I. T. & Lauro, F. M., 20 Oct 2015, In : Scientific Reports. 5, p. 1-13 13 p., 15383.

Research output: Contribution to journalArticle

Open Access
File
12 Citations (Scopus)
37 Downloads (Pure)
2011

Crystal structure of an integron gene cassette-associated protein from Vibrio cholerae identifies a cationic drug-binding module

Deshpande, C. N., Harrop, S. J., Boucher, Y., Hassan, K. A., Leo, R. D., Xu, X., Cui, H., Savchenko, A., Chang, C., Labbate, M., Paulsen, I. T., Stokes, H. W., Curmi, P. M. G. & Mabbutt, B. C., 2011, In : PLoS ONE. 6, 3, p. 1-11 11 p., e16934.

Research output: Contribution to journalArticle

8 Citations (Scopus)
2013

H-NS Plays a role in expression of Acinetobacter baumannii virulence features

Eijkelkamp, B. A., Stroeher, U. H., Hassan, K. A., Elbourne, L. D. H., Paulsen, I. T. & Brown, M. H., Jul 2013, In : Infection and Immunity. 81, 7, p. 2574-2583 10 p.

Research output: Contribution to journalArticle

Open Access
File
48 Citations (Scopus)
15 Downloads (Pure)
2011

Comparative genomic analysis reveals new aspects of the biology and secondary metabolism of biological control strains of Pseudomonas spp.

Loper, J. E., Hassan, K. A., Davis, E. W., Lim, C. K. & Paulsen, I. T., Jun 2011, In : Phytopathology. 101, 6S, p. S231-S231 1 p.

Research output: Contribution to journalMeeting abstract

9 Citations (Scopus)
2015

Bacillus cereus efflux protein BC3310 - : a multidrug transporter of the unknown major facilitator family, UMF-2

Kroeger, J. K., Hassan, K., Vörös, A., Simm, R., Saidijam, M., Bettaney, K. E., Bechthold, A., Paulsen, I. T., Henderson, P. J. F. & Kolstø, A. B., 2015, In : Frontiers in Microbiology. 6, 12 p., 1063.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
12 Downloads (Pure)
2013

Transcriptomic and biochemical analyses identify a family of chlorhexidine efflux proteins

Hassan, K. A., Jackson, S. M., Penesyan, A., Patching, S. G., Tetu, S. G., Eijkelkamp, B. A., Brown, M. H., Henderson, P. J. F. & Paulsen, I. T., 10 Dec 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 50, p. 20254-20259 6 p.

Research output: Contribution to journalArticle

61 Citations (Scopus)

Single-step selection of drug resistant Acinetobacter baylyi ADP1 mutants reveals a functional redundancy in the recruitment of multidrug efflux systems

Brzoska, A. J., Hassan, K. A., de Leon, E. J., Paulsen, I. T. & Lewis, P. J., 7 Feb 2013, In : PLoS ONE. 8, 2, p. 1-11 11 p., e56090.

Research output: Contribution to journalArticle

Open Access
File
13 Citations (Scopus)
8 Downloads (Pure)
2015

Insights on virulence from the complete genome of Staphylococcus capitis

Cameron, D. R., Jiang, J. H., Hassan, K. A., Elbourne, L. D. H., Tuck, K. L., Paulsen, I. T. & Peleg, A. Y., 23 Sep 2015, In : Frontiers in Microbiology. 6, p. 1-12 12 p., 980.

Research output: Contribution to journalArticle

Open Access
File
22 Citations (Scopus)
15 Downloads (Pure)

The Rsm regulon of plant growth-promoting Pseudomonas fluorescens SS101: role of small RNAs in regulation of lipopeptide biosynthesis

Song, C., van der Voort, M., van de Mortel, J., Hassan, K. A., Elbourne, L. D. H., Paulsen, I. T., Loper, J. E. & Raaijmakers, J. M., 1 Mar 2015, In : Microbial Biotechnology. 8, 2, p. 296-310 15 p.

Research output: Contribution to journalArticle

Open Access
File
7 Citations (Scopus)
4 Downloads (Pure)
2018

Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative

Brown, M. V., van de Kamp, J., Ostrowski, M., Seymour, J. R., Ingleton, T., Messer, L. F., Jeffries, T., Siboni, N., Laverock, B., Bibiloni-Isaksson, J., Nelson, T. M., Coman, F., Davies, C. H., Frampton, D., Rayner, M., Goossen, K., Robert, S., Holmes, B., Abell, G. C. J., Craw, P. & 17 others, Kahlke, T., Sow, S. L. S., McAllister, K., Windsor, J., Skuza, M., Crossing, R., Patten, N., Malthouse, P., van Ruth, P. D., Paulsen, I., Fuhrman, J. A., Richardson, A., Koval, J., Bissett, A., Fitzgerald, A., Moltmann, T. & Bodrossy, L., 17 Jul 2018, In : Scientific Data. 5, p. 1-10 10 p., 180130.

Research output: Contribution to journalArticle

Open Access
File
11 Citations (Scopus)
2 Downloads (Pure)
2014

Genome sequence of the neurotoxigenic Clostridium butyricum strain 5521

Hassan, K. A., Elbourne, L. D. H., Tetu, S. G., Johnson, E. A. & Paulsen, I. T., 2014, In : Genome Announcements. 2, 3, p. 1-2 2 p., e00632-14.

Research output: Contribution to journalArticle

5 Citations (Scopus)
2011

Clostridium perfringens

Hassan, K. A. & Paulsen, I. T., 2011, Genomes of foodborne and waterborne pathogens. Fratamico, P., Liu, Y. & Kathariou, S. (eds.). Washington,USA: AMER SOC MICROBIOLOGY, p. 213-221 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2017

The putative drug efflux systems of the Bacillus cereus group

Hassan, K. A., Fagerlund, A., Elbourne, L. D. H., Vörös, A., Kroeger, J. K., Simm, R., Tourasse, N. J., Finke, S., Henderson, P. J. F., Økstad, O. A., Paulsen, I. T. & Kolstø, A-B., 4 May 2017, In : PLoS ONE. 12, 5, p. 1-25 25 p., e0176188.

Research output: Contribution to journalArticle

Open Access
File
5 Downloads (Pure)
2019

Interactions of an emerging fungal pathogen Scedosporium aurantiacum with human lung epithelial cells

Kaur, J., Kautto, L., Penesyan, A., Meyer, W., Elbourne, L. D. H., Paulsen, I. T. & Nevalainen, H., 22 Mar 2019, In : Scientific Reports. 9, p. 1-10 10 p., 5035.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
4 Downloads (Pure)
2017
66 Citations (Scopus)
26 Downloads (Pure)
2019

Short-chain diamines are the physiological substrates of PACE family efflux pumps

Hassan, K. A., Naidu, V., Edgerton, J. R., Mettrick, K. A., Liu, Q., Fahmy, L., Li, L., Jackson, S. M., Ahmad, I., Sharples, D., Henderson, P. J. F. & Paulsen, I. T., 3 Sep 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 36, p. 18015-18020 6 p.

Research output: Contribution to journalArticle

Open Access
2015
Open Access
File
18 Citations (Scopus)
6 Downloads (Pure)

Phenotypic profiling of Scedosporium aurantiacum, an opportunistic pathogen colonizing human lungs

Kaur, J., Duan, S. Y., Vaas, L. A. I., Penesyan, A., Meyer, W., Paulsen, I. T. & Nevalainen, H., 26 Mar 2015, In : PLoS ONE. 10, 3, p. 1-14 14 p., e0122354.

Research output: Contribution to journalArticle

Open Access
File
12 Citations (Scopus)
16 Downloads (Pure)
2019

Succession patterns and physical niche partitioning in microbial communities from subsurface coal seams

Vick, S. H. W., Greenfield, P., Pinetown, K. L., Sherwood, N., Gong, S., Tetu, S. G., Midgley, D. J. & Paulsen, I. T., 22 Feb 2019, In : iScience. 12, p. 152-167 16 p.

Research output: Contribution to journalArticle

Open Access
File
5 Citations (Scopus)
1 Downloads (Pure)
2011

Genome sequence of Vibrio rotiferianus strain DAT722

Chowdhury, P. R., Boucher, Y., Hassan, K. A., Paulsen, I. T., Stokes, H. W. & Labbate, M., Jul 2011, In : Journal of Bacteriology. 193, 13, p. 3381-3382 2 p.

Research output: Contribution to journalComment/opinion

12 Citations (Scopus)
2019

Rapid microevolution of biofilm cells in response to antibiotics

Penesyan, A., Nagy, S. S., Kjelleberg, S., Gillings, M. R. & Paulsen, I. T., 6 Nov 2019, In : npj Biofilms and Microbiomes. 5, p. 1-14 14 p., 34.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
4 Downloads (Pure)

Identification of novel Acinetobacter baumannii host fatty acid stress adaptation strategies

Jiang, J-H., Hassan, K. A., Begg, S. L., Rupasinghe, T. W. T., Naidu, V., Pederick, V. G., Khorvash, M., Whittall, J. J., Paton, J. C., Paulsen, I. T., McDevitt, C. A., Peleg, A. Y. & Eijkelkamp, B. A., 2019, In : mBio. 10, 1, p. 1-6 6 p., e02056-18.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
9 Downloads (Pure)
2014

Comparative analysis of surface-exposed virulence factors of Acinetobacter baumannii

Eijkelkamp, B. A., Stroeher, U. H., Hassan, K. A., Paulsen, I. T. & Brown, M. H., 25 Nov 2014, In : BMC Genomics. 15, p. 1-12 12 p., 1020.

Research output: Contribution to journalArticle

Open Access
File
51 Citations (Scopus)
10 Downloads (Pure)
2018

Genome-based evolutionary history of Pseudomonas spp

Hesse, C., Schulz, F., Bull, C. T., Shaffer, B. T., Yan, Q., Shapiro, N., Hassan, K. A., Varghese, N., Elbourne, L. D. H., Paulsen, I. T., Kyrpides, N., Woyke, T. & Loper, J. E., Jun 2018, In : Environmental microbiology. 20, 6, p. 2142-2159 18 p.

Research output: Contribution to journalArticle

16 Citations (Scopus)
2012

Analysis of two marine metagenomes reveals the diversity of plasmids in oceanic environments

Ma, Y., Paulsen, I. T. & Palenik, B., Feb 2012, In : Environmental microbiology. 14, 2, p. 453-466 14 p.

Research output: Contribution to journalArticle

26 Citations (Scopus)

Resolving low-expression cell surface antigens by time-gated orthogonal scanning automated microscopy

Lu, J., Martin, J., Lu, Y., Zhao, J., Yuan, J., Ostrowski, M., Paulsen, I., Piper, J. A. & Jin, D., 20 Nov 2012, In : Analytical Chemistry. 84, 22, p. 9674-9678 5 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)
2013
23 Citations (Scopus)
2018

Screening of candidate substrates and coupling ions of transporters by thermostability shift assays

Majd, H., King, M. S., Palmer, S. M., Smith, A. C., Elbourne, L. D. H., Paulsen, I. T., Sharples, D., Henderson, P. J. F. & Kunji, E. R. S., 15 Oct 2018, In : eLife. 7, p. 1-17 17 p., 38821.

Research output: Contribution to journalArticle

Open Access
File
8 Citations (Scopus)
67 Downloads (Pure)
2013

Maintenance of essential amino acid synthesis pathways in the Blattabacterium cuenoti symbiont of a wood-feeding cockroach

Tokuda, G., Elbourne, L. D. H., Kinjo, Y., Saitoh, S., Sabree, Z., Hojo, M., Yamada, A., Hayashi, Y., Shigenobu, S., Bandi, C., Paulsen, I. T., Watanabe, H. & Lo, N., 23 Jun 2013, In : Biology Letters. 9, 3, p. 1-4 4 p., 20121153.

Research output: Contribution to journalArticle

26 Citations (Scopus)
2018

The EcoCyc Database

Karp, P. D., Ong, W. K., Paley, S., Billington, R., Caspi, R., Fulcher, C., Kothari, A., Krummenacker, M., Latendresse, M., Midford, P. E., Subhraveti, P., Gama-Castro, S., Muñiz-Rascado, L., Bonavides-Martinez, C., Santos-Zavaleta, A., Mackie, A., Collado-Vides, J., Keseler, I. M. & Paulsen, I., 12 Nov 2018, In : EcoSal Plus. 8, 1, 19 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)