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  • Nicki Packer

3D sub-diffraction imaging in a conventional confocal configuration by exploiting super-linear emitters

Denkova, D., Ploschner, M., Das, M., Parker, L., Zheng, X., Lu, Y., Orth, A., Packer, N. & Piper, J., 16 Aug 2019, In : Nature Communications. 10, p. 1-12 12 p., 3695.

Research output: Contribution to journalArticle

Open Access
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2 Citations (Scopus)
15 Downloads (Pure)

Acquired drug resistance by decrease of sialylated glycans on acute lymphoblastic leukemia cell-membrane glycoproteins

Nakano, M., Shirai, R., Ito, J., Kavallaris, M. & Packer, N., Nov 2014, In : Glycobiology. 24, 11, p. 1217-1217 1 p.

Research output: Contribution to journalMeeting abstract

134 Citations (Scopus)

Alcoholic liver disease alters glycosylation-associated gene expression

Lee, A., d'Avigdor, W. M., Christiansen, M. N., Harrison, M. J., Packer, N. H., McLennan, S. V. & Shackel, N. A., Apr 2014, In : Journal of Hepatology. 60, S1, p. S173-S174 2 p.

Research output: Contribution to journalMeeting abstract

Analysis of mucosal mucins separated by SDS-urea agarose polyacrylamide composite gel electrophoresis

Issa, S. M. A., Schulz, B. L., Packer, N. H. & Karlsson, N. G., Dec 2011, In : Electrophoresis. 32, 24, p. 3554-3563 10 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)

An optimized approach for enrichment of glycoproteins from cell culture lysates using native multi-lectin affinity chromatography

Lee, L. Y., Hincapie, M., Packer, N., Baker, M. S., Hancock, W. S. & Fanayan, S., Sep 2012, In : Journal of Separation Science. 35, 18, p. 2445-2452 8 p.

Research output: Contribution to journalArticle

19 Citations (Scopus)

A novel post-translational modification in nerve terminals: O-linked N-acetylglucosamine phosphorylation

Graham, M. E., Thaysen-Andersen, M., Bache, N., Craft, G. E., Larsen, M. R., Packer, N. H. & Robinson, P. J., 3 Jun 2011, In : Journal of Proteome Research. 10, 6, p. 2725-2733 9 p.

Research output: Contribution to journalArticle

22 Citations (Scopus)

A platform for the structural characterization of glycans enzymatically released from glycosphingolipids extracted from tissue and cells

Anugraham, M., Everest-Dass, A. V., Jacob, F. & Packer, N. H., 15 Apr 2015, In : Rapid Communications in Mass Spectrometry. 29, 7, p. 545-561 17 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Asn(347) glycosylation of corticosteroid-binding globulin fine-tunes the host immune response by modulating proteolysis by pseudomonas aeruginosa and neutrophil Elastase

Sumer-Bayraktar, Z., Grant, O. C., Venkatakrishnan, V., Woods, R. J., Packer, N. H. & Thaysen-Andersen, M., 19 Aug 2016, In : Journal of Biological Chemistry. 291, 34, p. 17727-17742 16 p.

Research output: Contribution to journalArticle

16 Citations (Scopus)

A Sydney proteome story

Williams, K. L., Gooley, A. A., Wilkins, M. R. & Packer, N. H., 31 Jul 2014, In : Journal of Proteomics. 107, p. 13-23 11 p.

Research output: Contribution to journalReview article

3 Citations (Scopus)

Autoimmue hepatitis (AIH) and primary biliary cirrhosis (PBC) alter the N-linked glycosylation pathway

Lee, A., Christiansen, M. N., Packer, N. H., McLennan, S. V. & Shackel, N. A., Apr 2015, In : Journal of Hepatology. 62, S2, p. S800 1 p.

Research output: Contribution to journalMeeting abstract

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

Katayama, T., Wilkinson, M. D., Aoki-Kinoshita, K. F., Kawashima, S., Yamamoto, Y., Yamaguchi, A., Okamoto, S., Kawano, S., Kim, J. D., Wang, Y., Wu, H., Kano, Y., Ono, H., Bono, H., Kocbek, S., Aerts, J., Akune, Y., Antezana, E., Arakawa, K., Aranda, B. & 65 others, Baran, J., Bolleman, J., Bonnal, R. J. P., Buttigieg, P. L., Campbell, M. P., Chen, Y. A., Chiba, H., Cock, P. J. A., Cohen, K. B., Constantin, A., Duck, G., Dumontier, M., Fujisawa, T., Fujiwara, T., Goto, N., Hoehndorf, R., Igarashi, Y., Itaya, H., Ito, M., Iwasaki, W., Kalaš, M., Katoda, T., Kim, T., Kokubu, A., Komiyama, Y., Kotera, M., Laibe, C., Lapp, H., Lütteke, T., Marshall, M. S., Mori, T., Mori, H., Morita, M., Murakami, K., Nakao, M., Narimatsu, H., Nishide, H., Nishimura, Y., Nystrom-Persson, J., Ogishima, S., Okamura, Y., Okuda, S., Oshita, K., Packer, N. H., Prins, P., Ranzinger, R., Rocca-Serra, P., Sansone, S., Sawaki, H., Shin, S. H., Splendiani, A., Strozzi, F., Tadaka, S., Toukach, P., Uchiyama, I., Umezaki, M., Vos, R., Whetzel, P. L., Yamada, I., Yamasaki, C., Yamashita, R., York, W. S., Zmasek, C. M., Kawamoto, S. & Takagi, T., 2014, In : Journal of Biomedical Semantics. 5, p. 1-13 13 p., 5.

Research output: Contribution to journalReview article

Open Access
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23 Citations (Scopus)
22 Downloads (Pure)

Biosimilarity and interchangeability: principles and evidence: a systematic review

McKinnon, R. A., Cook, M., Liauw, W., Marabani, M., Marschner, I. C., Packer, N. H. & Prins, J. B., Feb 2018, In : BioDrugs. 32, 1, p. 27-52 26 p.

Research output: Contribution to journalReview article

Open Access
File
27 Citations (Scopus)
161 Downloads (Pure)

Blood group antigen expression is involved in C. albicans interaction with buccal epithelial cells

Everest-Dass, A. V., Kolarich, D., Pascovici, D. & Packer, N. H., Feb 2017, In : Glycoconjugate Journal. 34, 1, p. 31-50 20 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Blood group antigen recognition via the group a streptococcal m protein mediates host colonization

De Oliveira, D. M. P., Hartley-Tassell, L., Everest-Dass, A., Jennings, M. P., Sanderson-Smith, M. L., Day, C. J., Dabbs, R. A., Ve, T., Kobe, B., Nizet, V., Packer, N. H., Walker, M. J., Jennings, M. P. & Sanderson-Smith, M. L., 24 Jan 2017, In : mBio. 8, 1, p. 1-12 12 p., e02237-16.

Research output: Contribution to journalArticle

Open Access
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8 Citations (Scopus)
7 Downloads (Pure)

Bright upconversion nanoparticles under light-emitting diode excitation

Cao, Y., Zheng, X., Piper, J. A., Packer, N. H. & Lu, Y., 2019, Biophotonics Australasia 2019. Goldys, E. M. & Gibson, B. C. (eds.). Bellingham : WA: SPIE, Vol. 11202. 2 p. 112021P

Research output: Chapter in Book/Report/Conference proceedingConference abstract

Building a PGC-LC-MS N-glycan retention library and elution mapping resource

Abrahams, J. L., Campbell, M. P. & Packer, N. H., Feb 2018, In : Glycoconjugate Journal. 35, 1, p. 15-29 15 p.

Research output: Contribution to journalArticle

26 Citations (Scopus)

Cell surface protein glycosylation in cancer

Christiansen, M. N., Chik, J., Lee, L., Anugraham, M., Abrahams, J. L. & Packer, N. H., Mar 2014, In : Proteomics. 14, 4-5, p. 525-546 22 p.

Research output: Contribution to journalReview article

262 Citations (Scopus)

Cereal products derived from wheat, sorghum, rice and oats alter the infant gut microbiota in vitro

Gamage, H. K. A. H., Tetu, S. G., Chong, R. W. W., Ashton, J., Packer, N. H. & Paulsen, I. T., 30 Oct 2017, In : Scientific Reports. 7, 1, p. 1-12 12 p., 14312.

Research output: Contribution to journalArticle

Open Access
File
9 Citations (Scopus)
5 Downloads (Pure)

Characterization and downstream mannose phosphorylation of human recombinant α-L-iduronidase produced in Arabidopsis complex glycan-deficient (cgl) seeds

He, X., Pierce, O., Haselhorst, T., von Itzstein, M., Kolarich, D., Packer, N. H., Gloster, T. M., Vocadlo, D. J., Qian, Y., Brooks, D. & Kermode, A. R., Dec 2013, In : Plant Biotechnology Journal. 11, 9, p. 1034-1043 10 p.

Research output: Contribution to journalArticle

13 Citations (Scopus)

Characterization of N- and O-linked glycosylation changes in milk of the tammar wallaby (Macropus eugenii) over lactation

Wongtrakul-Kish, K., Kolarich, D., Pascovici, D., Joss, J. L., Deane, E. & Packer, N. H., Jul 2013, In : Glycoconjugate Journal. 30, 5, p. 523-536 14 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Chemoenzymatic glycan labelling as a platform for site-specific IgM-antibody drug conjugates

Moh, E. S. X., Sayyadi, N. & Packer, N. H., 1 Nov 2019, In : Analytical Biochemistry. 584, p. 1-7 7 p., 113385.

Research output: Contribution to journalArticle

Combined N-glycome and N-glycoproteome analysis of the lotus japonicus seed globulin fraction shows conservation of protein structure and glycosylation in legumes

Dam, S., Thaysen-Andersen, M., Stenkjær, E., Lorentzen, A., Roepstorff, P., Packer, N. H. & Stougaard, J., 5 Jul 2013, In : Journal of Proteome Research. 12, 7, p. 3383-3392 10 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)

Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma

Kubicek, C. P., Herrera-Estrella, A., Seidl-Seiboth, V., Martinez, D. A., Druzhinina, I. S., Thon, M., Zeilinger, S., Casas-Flores, S., Horwitz, B. A., Mukherjee, P. K., Mukherjee, M., Kredics, L., Alcaraz, L. D., Aerts, A., Antal, Z., Atanasova, L., Cervantes-Badillo, M. G., Challacombe, J., Chertkov, O., McCluskey, K. & 44 others, Coulpier, F., Deshpande, N., von Döhren, H., Ebbole, D. J., Esquivel-Naranjo, E. U., Fekete, E., Flipphi, M., Glaser, F., Gómez-Rodríguez, E. Y., Gruber, S., Han, C., Henrissat, B., Hermosa, R., Hernández-Oñate, M., Karaffa, L., Kosti, I., Le Crom, S., Lindquist, E., Lucas, S., Lübeck, M., Lübeck, P. S., Margeot, A., Metz, B., Misra, M., Nevalainen, H., Omann, M., Packer, N., Perrone, G., Uresti-Rivera, E. E., Salamov, A., Schmoll, M., Seiboth, B., Shapiro, H., Sukno, S., Tamayo-Ramos, J. A., Tisch, D., Wiest, A., Wilkinson, H. H., Zhang, M., Coutinho, P. M., Kenerley, C. M., Monte, E., Baker, S. E. & Grigoriev, I. V., 18 Apr 2011, In : Genome Biology. 12, 4, p. 1-15 15 p., R40.

Research output: Contribution to journalArticle

Open Access
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298 Citations (Scopus)
20 Downloads (Pure)
63 Citations (Scopus)

Comparative proteomics and glycoproteomics reveal increased n-linked glycosylation and relaxed sequon specificity in Campylobacter jejuni NCTC11168 O

Scott, N. E., Marzook, N. B., Cain, J. A., Solis, N., Thaysen-Andersen, M., Djordjevic, S. P., Packer, N. H., Larsen, M. R. & Cordwell, S. J., 7 Nov 2014, In : Journal of Proteome Research. 13, 11, p. 5136-5150 15 p.

Research output: Contribution to journalArticle

27 Citations (Scopus)

Comparative structural analysis of the glycosylation of salivary and buccal cell proteins: innate protection against infection by Candida albicans

Everest-Dass, A. V., Jin, D., Thaysen-Andersen, M., Nevalainen, H., Kolarich, D. & Packer, N. H., Nov 2012, In : Glycobiology. 22, 11, p. 1465-1479 15 p.

Research output: Contribution to journalArticle

65 Citations (Scopus)

Comparing the chemical composition of dietary fibres prepared from sugarcane, psyllium husk and wheat dextrin

Chong, R. W. W., Ball, M., McRae, C. & Packer, N. H., 15 Nov 2019, In : Food Chemistry. 298, p. 1-8 8 p., 125032.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Comparison of analytical methods for profiling N- and O-linked glycans from cultured cell lines: HUPO Human Disease Glycomics/Proteome Initiative multi-institutional study

Ito, H., Kaji, H., Togayachi, A., Azadi, P., Ishihara, M., Geyer, R., Galuska, C., Geyer, H., Kakehi, K., Kinoshita, M., Karlsson, N. G., Jin, C., Kato, K., Yagi, H., Kondo, S., Kawasaki, N., Hashii, N., Kolarich, D., Stavenhagen, K., Packer, N. H. & 11 others, Thaysen-Andersen, M., Nakano, M., Taniguchi, N., Kurimoto, A., Wada, Y., Tajiri, M., Yang, P., Cao, W., Li, H., Rudd, P. M. & Narimatsu, H., 1 Jun 2016, In : Glycoconjugate Journal. 33, 3, p. 405-415 11 p.

Research output: Contribution to journalArticle

16 Citations (Scopus)
Open Access
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22 Citations (Scopus)
20 Downloads (Pure)

Comprehensive analysis of the N-glycan biosynthetic pathway using bioinformatics

Akune, Y., Campbell, M., Zhang, J., Aoki-Kinoshita, K. F. & Packer, N., Nov 2014, In : Glycobiology. 24, 11, p. 1163-1163 1 p.

Research output: Contribution to journalMeeting abstract

Comprehensive analysis of the N-glycan biosynthetic pathway using bioinformatics to generate UniCorn: A theoretical N-glycan structure database

Akune, Y., Lin, C. H., Abrahams, J. L., Zhang, J., Packer, N. H., Aoki-Kinoshita, K. F. & Campbell, M. P., 5 Aug 2016, In : Carbohydrate Research. 431, p. 56-63 8 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)

Comprehensive glycomics comparison between colon cancer cell cultures and tumours: Implications for biomarker studies

Chik, J. H. L., Zhou, J., Moh, E. S. X., Christopherson, R., Clarke, S. J., Molloy, M. P. & Packer, N. H., 28 Aug 2014, In : Journal of Proteomics. 108, p. 146-162 17 p.

Research output: Contribution to journalArticle

33 Citations (Scopus)
32 Citations (Scopus)

Comprehensive N-glycome profiling of cultured human epithelial breast cells identifies unique secretome N-glycosylation signatures enabling tumorigenic sub-type classification

Fanayan, S., Lee, L. Y., Thaysen-Andersen, M., Baker, M. S., Packer, N. H. & Hancock, W. S., Nov 2014, In : Glycobiology. 24, 11, p. 1220-1220 1 p., 368.

Research output: Contribution to journalMeeting abstract

Controllable in vitro glycoengineering with an artificial Golgi column

DeBono, N. J., Lin, C-H., Packer, N. H. (ed.) & Moh, E. S. X., 2019.

Research output: Contribution to conferenceAbstract

Cystic fibrosis and bacterial colonization define the sputum N-glycosylation phenotype

Venkatakrishnan, V., Thaysen-Andersen, M., Chen, S. C. A., Nevalainen, H. & Packer, N. H., 1 Jan 2015, In : Glycobiology. 25, 1, p. 88-100 13 p.

Research output: Contribution to journalArticle

22 Citations (Scopus)

Databases and associated tools for glycomics and glycoproteomics

Lisacek, F., Mariethoz, J., Alocci, D., Rudd, P. M., Abrahams, J. L., Campbell, M. P., Packer, N. H., Ståhle, J., Widmalm, G., Mullen, E., Adamczyk, B., Rojas-Macias, M. A., Jin, C. & Karlsson, N. G., 2017, High-throughput glycomics and glycoproteomics: Methods and protocols. Lauc, G. & Wuhrer, M. (eds.). New York: Humana Press Inc., p. 235-264 30 p. (Methods in Molecular Biology; vol. 1503).

Research output: Chapter in Book/Report/Conference proceedingChapter

25 Citations (Scopus)

Detecting alterations of golgi resident glycosylation enzymes via quantitative proteomics: analysis of enriched golgi membranes

Lin, C-H., Chik, J., Molloy, M. P. & Packer, N. H., Nov 2013, In : Glycobiology. 23, 11, p. 1371-1371 1 p.

Research output: Contribution to journalMeeting abstract

Determination of site-specific glycan heterogeneity on glycoproteins

Kolarich, D., Jensen, P. H., Altmann, F. & Packer, N. H., Jul 2012, In : Nature Protocols. 7, 7, p. 1285-1298 14 p.

Research output: Contribution to journalArticle

129 Citations (Scopus)
14 Citations (Scopus)

Differential involvement of glycans in the binding of Staphylococcus epidermidis and Corynebacterium spp. to human sweat

Lin, C-H., Peterson, R. A., Gueniche, A., de Beaumais, S. A., Hourblin, V., Breton, L., Dalko, M. & Packer, N. H., Mar 2019, In : Microbiological Research. 220, p. 53-60 8 p.

Research output: Contribution to journalArticle

Differential site accessibility mechanistically explains subcellular specific N-glycosylation determinants

Lee, L. Y., Lin, C. H., Fanayan, S., Packer, N. H. & Thaysen-Andersen, M., 25 Aug 2014, In : Frontiers in Immunology. 5, p. 1-13 13 p., 404.

Research output: Contribution to journalArticle

Open Access
File
29 Citations (Scopus)
23 Downloads (Pure)
17 Citations (Scopus)

Dissecting the unique features of neutrophil glycobiology in inflammation and infection using glycoanalytics

Loke, I., Venkatakrishnan, V., Packer, N. H. & Thaysen-Andersen, M., Dec 2016, In : Glycobiology. 26, 12, p. 1479-1480 2 p., 257.

Research output: Contribution to journalMeeting abstract

Elevated MGAT3 expression in ovarian cancer cells is epigenetically regulated and correlates with expression of bisecting GlcNAc-modified proteins

Jacob, F., Anugraham, M., Kohler, R., Nixdorf, S., Everest-Dass, A. V., Fedier, A., Heinzelmann-Schwarz, V. & Packer, N. H., 15 Aug 2015, In : Clinical Cancer Research. 21, 16, 1 p.

Research output: Contribution to journalMeeting abstract

Emerging roles of protein mannosylation in inflammation and infection

Loke, I., Kolarich, D., Packer, N. H. & Thaysen-Andersen, M., 1 Oct 2016, In : Molecular Aspects of Medicine. 51, p. 31-55 25 p.

Research output: Contribution to journalReview article

22 Citations (Scopus)
1 Citation (Scopus)
5 Citations (Scopus)