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  • Ian Paulsen

Zinc stress induces copper depletion in Acinetobacter baumannii

Hassan, K. A., Pederick, V. G., Elbourne, L. D. H., Paulsen, I. T., Paton, J. C., McDevitt, C. A. & Eijkelkamp, B. A., 11 Mar 2017, In : BMC Microbiology. 17, 1, p. 1-15 15 p., 59.

Research output: Contribution to journalArticle

Open Access
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18 Citations (Scopus)
6 Downloads (Pure)

Yeast's balancing act between ethanol and glycerol production in low-alcohol wines

Goold, H. D., Kroukamp, H., Williams, T. C., Paulsen, I. T., Varela, C. & Pretorius, I. S., 1 Mar 2017, In : Microbial Biotechnology. 10, 2, p. 264-278 15 p.

Research output: Contribution to journalReview article

Open Access
File
46 Citations (Scopus)
39 Downloads (Pure)

Who eats what? Unravelling microbial conversion of coal to methane

Vick, S. H. W., Gong, S., Sestak, S., Vergara, T. J., Pinetown, K. L., Li, Z., Greenfield, P., Tetu, S. G., Midgley, D. J. & Paulsen, I. T., Jul 2019, In : FEMS Microbiology Ecology. 95, 7, p. 1-14 14 p., fiz093.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Unicellular cyanobacteria are important components of phytoplankton communities in Australia's Northern oceanic ecoregions

Moore, L. R., Huang, T., Ostrowski, M., Mazard, S., Kumar, S. S., Gamage, H. K. A. H., Brown, M. V., Messer, L. F., Seymour, J. R. & Paulsen, I., 23 Jan 2019, In : Frontiers in Microbiology. 9, p. 1-16 16 p., 3356.

Research output: Contribution to journalArticle

Open Access
File
12 Downloads (Pure)
73 Citations (Scopus)
26 Downloads (Pure)

Transcriptomic and biochemical analyses identify a family of chlorhexidine efflux proteins

Hassan, K. A., Jackson, S. M., Penesyan, A., Patching, S. G., Tetu, S. G., Eijkelkamp, B. A., Brown, M. H., Henderson, P. J. F. & Paulsen, I. T., 10 Dec 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 50, p. 20254-20259 6 p.

Research output: Contribution to journalArticle

65 Citations (Scopus)

Tiny microbes with a big impact: the role of cyanobacteria and their metabolites in shaping our future

Mazard, S., Penesyan, A., Ostrowski, M., Paulsen, I. T. & Egan, S., 17 May 2016, In : Marine Drugs. 14, 5, p. 1-19 19 p., 97.

Research output: Contribution to journalReview article

Open Access
File
36 Citations (Scopus)
29 Downloads (Pure)
Open Access
File
6 Downloads (Pure)

The Rsm regulon of plant growth-promoting Pseudomonas fluorescens SS101: role of small RNAs in regulation of lipopeptide biosynthesis

Song, C., van der Voort, M., van de Mortel, J., Hassan, K. A., Elbourne, L. D. H., Paulsen, I. T., Loper, J. E. & Raaijmakers, J. M., 1 Mar 2015, In : Microbial Biotechnology. 8, 2, p. 296-310 15 p.

Research output: Contribution to journalArticle

Open Access
File
8 Citations (Scopus)
4 Downloads (Pure)

The role of zinc efflux during Acinetobacter baumannii infection

Alquethamy, S. F., Adams, F. G., Naidu, V., Khorvash, M., Pederick, V. G., Zang, M., Paton, J. C., Paulsen, I. T., Hassan, K. A., Cain, A. K., McDevitt, C. A. & Eijkelkamp, B. A., 10 Jan 2020, In : ACS Infectious Diseases. 6, 1, p. 150-158 9 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

The role of the copA copper efflux system in Acinetobacter baumannii virulence

Alquethamy, S. F., Khorvash, M., Pederick, V. G., Whittall, J. J., Paton, J. C., Paulsen, I. T., Hassan, K. A., McDevitt, C. A. & Eijkelkamp, B. A., 1 Feb 2019, In : International Journal of Molecular Sciences. 20, 3, p. 1-13 13 p., 575.

Research output: Contribution to journalArticle

Open Access
File
7 Citations (Scopus)
23 Downloads (Pure)

The Role of efflux pumps in the nosocomial pathogens Staphylococcus aureus and Acinetobacter baumannii

Eijkelkamp, B. A., Hassan, K. A., Paulsen, I. T. & Brown, M. H., 2013, Microbial efflux pumps: current research. Yu, E. W., Zhang, Q. & Brown, M. H. (eds.). Norfolk: Caister Academic Press, p. 123-141 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

The putative drug efflux systems of the Bacillus cereus group

Hassan, K. A., Fagerlund, A., Elbourne, L. D. H., Vörös, A., Kroeger, J. K., Simm, R., Tourasse, N. J., Finke, S., Henderson, P. J. F., Økstad, O. A., Paulsen, I. T. & Kolstø, A-B., 4 May 2017, In : PLoS ONE. 12, 5, p. 1-25 25 p., e0176188.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
5 Downloads (Pure)

The MFS efflux proteins of gram-positive and gram-negative bacteria

Saidijam, M., Bettaney, K. E., Leng, D., Ma, P., Xu, Z., Keen, J. N., Rutherford, N. G., Ward, A., Henderson, P. J. F., Szakonyi, G., Ren, Q., Paulsen, I. T., Nes, I., Kroeger, J. K. & Kolsto, A. B., 2011, Advances in Enzymology and Related Areas of Molecular Biology. Toone, E. J. (ed.). Hoboken, NJ: John Wiley & Sons, Vol. 771. p. 147-166 20 p. (Advances in Enzymology and Related Areas of Molecular Biology).

Research output: Chapter in Book/Report/Conference proceedingChapter

8 Citations (Scopus)

The effect of zinc limitation on the transcriptome of Pseudomonas protegens Pf-5

Lim, C. K., Hassan, K. A., Penesyan, A., Loper, J. E. & Paulsen, I. T., Mar 2013, In : Environmental microbiology. 15, 3, p. 702-715 14 p.

Research output: Contribution to journalArticle

27 Citations (Scopus)

The effect of iron limitation on the transcriptome and proteome of Pseudomonas fluorescens Pf-5

Lim, C. K., Hassan, K. A., Tetu, S. G., Loper, J. E. & Paulsen, I. T., 18 Jun 2012, In : PLoS ONE. 7, 6, p. 1-18 18 p., e39139.

Research output: Contribution to journalArticle

Open Access
File
43 Citations (Scopus)
14 Downloads (Pure)

The EcoCyc Database

Karp, P. D., Ong, W. K., Paley, S., Billington, R., Caspi, R., Fulcher, C., Kothari, A., Krummenacker, M., Latendresse, M., Midford, P. E., Subhraveti, P., Gama-Castro, S., Muñiz-Rascado, L., Bonavides-Martinez, C., Santos-Zavaleta, A., Mackie, A., Collado-Vides, J., Keseler, I. M. & Paulsen, I., 12 Nov 2018, In : EcoSal Plus. 8, 1, 19 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12

Keseler, I. M., Mackie, A., Santos-Zavaleta, A., Billington, R., Bonavides-Martínez, C., Caspi, R., Fulcher, C., Gama-Castro, S., Kothari, A., Krummenacker, M., Latendresse, M., Muñiz-Rascado, L., Ong, Q., Paley, S., Peralta-Gil, M., Subhraveti, P., Velázquez-Ramírez, D. A., Weaver, D., Collado-Vides, J., Paulsen, I. & 1 others, Karp, P. D., Jan 2017, In : Nucleic Acids Research. 45, D1, p. D543-D550 8 p.

Research output: Contribution to journalArticle

Open Access
File
156 Citations (Scopus)
80 Downloads (Pure)

The EcoCyc database

Karp, P. D., Weaver, D., Paley, S., Fulcher, C., Kubo, A., Kothari, A., Krummenacker, M., Subhraveti, P., Weerasinghe, D., Gama-Castro, S., Huerta, A. M., Muñiz-Rascado, L., Bonavides-Martinez, C., Weiss, V., Peralta-Gil, M., Santos-Zavaleta, A., Schröder, I., Mackie, A., Gunsalus, R., Collado-Vides, J. & 2 others, Keseler, I. M. & Paulsen, I., 2014, In : EcoSal Plus. 6, 1, p. 1-13 13 p.

Research output: Contribution to journalArticle

Open Access
34 Citations (Scopus)

The complete genome and phenome of a community-acquired Acinetobacter baumannii

Farrugia, D. N., Elbourne, L. D. H., Hassan, K. A., Eijkelkamp, B. A., Tetu, S. G., Brown, M. H., Shah, B. S., Peleg, A. Y., Mabbutt, B. C. & Paulsen, I. T., 19 Mar 2013, In : PLoS ONE. 8, 3, p. 1-13 13 p., e58628.

Research output: Contribution to journalArticle

Open Access
File
46 Citations (Scopus)
42 Downloads (Pure)

The common oceanographer: crowdsourcing the collection of oceanographic data

Lauro, F. M., Senstius, S. J., Cullen, J., Neches, R., Jensen, R. M., Brown, M. V., Darling, A. E., Givskov, M., McDougald, D., Hoeke, R., Ostrowski, M., Philip, G. K., Paulsen, I. T. & Grzymski, J. J., 9 Sep 2014, In : PLoS Biology. 12, 9, p. 1-5 5 p., 1001947.

Research output: Contribution to journalArticle

Open Access
File
18 Citations (Scopus)
18 Downloads (Pure)

The Coal Seam Microbiome (CSMB) reference set, a lingua franca for the microbial coal-to-methane community

Vick, S. H. W., Greenfield, P., Tran-Dinh, N., Tetu, S. G., Midgley, D. J. & Paulsen, I. T., 1 Feb 2018, In : International Journal of Coal Geology. 186, p. 41-50 10 p.

Research output: Contribution to journalArticle

13 Citations (Scopus)

Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative

Brown, M. V., van de Kamp, J., Ostrowski, M., Seymour, J. R., Ingleton, T., Messer, L. F., Jeffries, T., Siboni, N., Laverock, B., Bibiloni-Isaksson, J., Nelson, T. M., Coman, F., Davies, C. H., Frampton, D., Rayner, M., Goossen, K., Robert, S., Holmes, B., Abell, G. C. J., Craw, P. & 17 others, Kahlke, T., Sow, S. L. S., McAllister, K., Windsor, J., Skuza, M., Crossing, R., Patten, N., Malthouse, P., van Ruth, P. D., Paulsen, I., Fuhrman, J. A., Richardson, A., Koval, J., Bissett, A., Fitzgerald, A., Moltmann, T. & Bodrossy, L., 17 Jul 2018, In : Scientific Data. 5, p. 1-10 10 p., 180130.

Research output: Contribution to journalArticle

Open Access
File
14 Citations (Scopus)
2 Downloads (Pure)

Synthetic Evolution of Metabolic Productivity Using Biosensors

Williams, T. C., Pretorius, I. S. & Paulsen, I. T., 1 May 2016, In : Trends in Biotechnology. 34, 5, p. 371-381 11 p.

Research output: Contribution to journalReview article

50 Citations (Scopus)

Succession patterns and physical niche partitioning in microbial communities from subsurface coal seams

Vick, S. H. W., Greenfield, P., Pinetown, K. L., Sherwood, N., Gong, S., Tetu, S. G., Midgley, D. J. & Paulsen, I. T., 22 Feb 2019, In : iScience. 12, p. 152-167 16 p.

Research output: Contribution to journalArticle

Open Access
File
6 Citations (Scopus)
3 Downloads (Pure)

Subsurface Stappia: success through defence, specialisation and putative pressure-dependent carbon fixation

Vick, S. H. W., Greenfield, P., Willows, R. D., Tetu, S. G., Midgley, D. J. & Paulsen, I. T., Jul 2020, In : Microbial Ecology. 80, 1, p. 34-46 13 p.

Research output: Contribution to journalArticle

Open Access
File
3 Citations (Scopus)
21 Downloads (Pure)

Structural and functional analysis of the type III secretion system from Pseudomonas fluorescens Q8r1-96

Mavrodi, D. V., Joe, A., Mavrodi, O. V., Hassan, K. A., Weller, D. M., Paulsen, I. T., Loper, J. E., Alfano, J. R. & Thomashow, L. S., Jan 2011, In : Journal of Bacteriology. 193, 1, p. 177-189 13 p.

Research output: Contribution to journalArticle

34 Citations (Scopus)

Stress effects caused by the expression of a mutant cellobiohydrolase I and proteasome inhibition in Trichoderma reesei Rut-C30

Kautto, L., Grinyer, J., Paulsen, I., Tetu, S., Pillai, A., Pardiwalla, S., Sezerman, U., Akcapinar, G. B., Bergquist, P., Te'o, J. & Nevalainen, H., 25 Jan 2013, In : New Biotechnology. 30, 2, p. 183-191 9 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Stormwater influences phytoplankton assemblages within the diverse, but impacted Sydney Harbour estuary

Varkey, D., Mazard, S., Jeffries, T. C., Hughes, D. J., Seymour, J., Paulsen, I. T. & Ostrowski, M., 26 Dec 2018, In : PLoS ONE. 13, 12, 16 p., e0209857.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
9 Downloads (Pure)

Spatially extensive microbial biogeography of the Indian Ocean provides insights into the unique community structure of a pristine coral atoll

Jeffries, T. C., Ostrowski, M., Williams, R. B., Xie, C., Jensen, R. M., Grzymski, J. J., Senstius, S. J., Givskov, M., Hoeke, R., Philip, G. K., Neches, R. Y., Drautz-Moses, D. I., Chenard, C., Paulsen, I. T. & Lauro, F. M., 20 Oct 2015, In : Scientific Reports. 5, p. 1-13 13 p., 15383.

Research output: Contribution to journalArticle

Open Access
File
13 Citations (Scopus)
41 Downloads (Pure)

Single-step selection of drug resistant Acinetobacter baylyi ADP1 mutants reveals a functional redundancy in the recruitment of multidrug efflux systems

Brzoska, A. J., Hassan, K. A., de Leon, E. J., Paulsen, I. T. & Lewis, P. J., 7 Feb 2013, In : PLoS ONE. 8, 2, p. 1-11 11 p., e56090.

Research output: Contribution to journalArticle

Open Access
File
14 Citations (Scopus)
8 Downloads (Pure)

Short-chain diamines are the physiological substrates of PACE family efflux pumps

Hassan, K. A., Naidu, V., Edgerton, J. R., Mettrick, K. A., Liu, Q., Fahmy, L., Li, L., Jackson, S. M., Ahmad, I., Sharples, D., Henderson, P. J. F. & Paulsen, I. T., 3 Sep 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 36, p. 18015-18020 6 p.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Sequences of two related multiple antibiotic resistance virulence plasmids sharing a unique IS26-related molecular signature isolated from different Escherichia coli pathotypes from different hosts

Venturini, C., Hassan, K. A., Chowdhury, P. R., Paulsen, I. T., Walker, M. J. & Djordjevic, S. P., 4 Nov 2013, In : PLoS ONE. 8, 11, p. 1-14 14 p., e78862.

Research output: Contribution to journalArticle

28 Citations (Scopus)

Selection in coastal Synechococcus (cyanobacteria) populations evaluated from environmental metagenomes

Tai, V., Poon, A. F. Y., Paulsen, I. T. & Palenik, B., 9 Sep 2011, In : PLoS ONE. 6, 9, p. 1-14 14 p., e24249.

Research output: Contribution to journalArticle

Open Access
File
14 Citations (Scopus)
9 Downloads (Pure)

SecDF as part of the sec-translocase facilitates efficient secretion of Bacillus cereus toxins and cell wall-associated proteins

Vörös, A., Simm, R., Slamti, L., McKay, M. J., Hegna, I. K., Nielsen-LeRoux, C., Hassan, K. A., Paulsen, I. T., Lereclus, D., Okstad, O. A., Molloy, M. P. & Kolstø, A. B., 1 Aug 2014, In : PLoS ONE. 9, 8, p. 1-17 17 p., e103326.

Research output: Contribution to journalArticle

Open Access
File
10 Citations (Scopus)
15 Downloads (Pure)

Screening of candidate substrates and coupling ions of transporters by thermostability shift assays

Majd, H., King, M. S., Palmer, S. M., Smith, A. C., Elbourne, L. D. H., Paulsen, I. T., Sharples, D., Henderson, P. J. F. & Kunji, E. R. S., 15 Oct 2018, In : eLife. 7, p. 1-17 17 p., 38821.

Research output: Contribution to journalArticle

Open Access
File
10 Citations (Scopus)
83 Downloads (Pure)

Roles of DHA2 family transporters in drug resistance and iron homeostasis in Acinetobacter spp.

Hassan, K. A., Brzoska, A. J., Wilson, N. L., Eijkelkamp, B. A., Brown, M. H. & Paulsen, I. T., Apr 2011, In : Journal of Molecular Microbiology and Biotechnology. 20, 2, p. 116-124 9 p.

Research output: Contribution to journalArticle

15 Citations (Scopus)

Revealing colonisation and biofilm formation of an adherent coal seam associated microbial community on a coal surface

Vick, S. H. W., Tetu, S. G., Sherwood, N., Pinetown, K., Sestak, S., Vallotton, P., Elbourne, L. D. H., Greenfield, P., Johnson, E., Barton, D., Midgley, D. J. & Paulsen, I. T., 15 Apr 2016, In : International Journal of Coal Geology. 160-161, p. 42-50 9 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)

Resolving low-expression cell surface antigens by time-gated orthogonal scanning automated microscopy

Lu, J., Martin, J., Lu, Y., Zhao, J., Yuan, J., Ostrowski, M., Paulsen, I., Piper, J. A. & Jin, D., 20 Nov 2012, In : Analytical Chemistry. 84, 22, p. 9674-9678 5 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)

Regulation of the aceI multidrug efflux pump gene in Acinetobacter baumannii

Liu, Q., Hassan, K. A., Ashwood, H. E., Gamage, H. K. A. H., Li, L., Mabbutt, B. C. & Paulsen, I. T., Jun 2018, In : Journal of Antimicrobial Chemotherapy. 73, 6, p. 1492-1500 9 p.

Research output: Contribution to journalArticle

Open Access
File
8 Citations (Scopus)
18 Downloads (Pure)
16 Citations (Scopus)

Rapid microevolution of biofilm cells in response to antibiotics

Penesyan, A., Nagy, S. S., Kjelleberg, S., Gillings, M. R. & Paulsen, I. T., 6 Nov 2019, In : npj Biofilms and Microbiomes. 5, p. 1-14 14 p., 34.

Research output: Contribution to journalArticle

Open Access
File
5 Citations (Scopus)
6 Downloads (Pure)

QTL analysis of natural Saccharomyces cerevisiae isolates reveals unique alleles involved in lignocellulosic inhibitor tolerance

de Witt, R. N., Kroukamp, H., Van Zyl, W. H., Paulsen, I. T. & Volschenk, H., Aug 2019, In : FEMS Yeast Research. 19, 5, p. 1-14 14 p., foz047.

Research output: Contribution to journalArticle

1 Citation (Scopus)
Open Access
File
18 Citations (Scopus)
6 Downloads (Pure)
13 Citations (Scopus)

Proteomics of hosts and pathogens in cystic fibrosis

Kamath, K. S., Kumar, S. S., Kaur, J., Venkatakrishnan, V., Paulsen, I. T., Nevalainen, H. & Molloy, M. P., 1 Feb 2015, In : Proteomics - Clinical Applications. 9, 1-2, p. 134-146 13 p.

Research output: Contribution to journalReview article

9 Citations (Scopus)
Open Access
File
35 Downloads (Pure)
Open Access
File
11 Citations (Scopus)
23 Downloads (Pure)