A continuous-time state-space model for rapid quality control of Argos locations from animal-borne tags

Ian D. Jonsen, Toby A. Patterson, Daniel P. Costa, Philip D. Doherty, Brendan J. Godley, W. James Grecian, Christophe Guinet, Xavier Hoenner, Sarah S. Kienle, Patrick W. Robinson, Stephen C. Votier, Scott Whiting, Matthew J. Witt, Mark A. Hindell, Robert G. Harcourt, Clive R. McMahon

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Abstract

Background: State-space models are important tools for quality control and analysis of error-prone animal movement data. The near real-time (within 24 h) capability of the Argos satellite system can aid dynamic ocean management of human activities by informing when animals enter wind farms, shipping lanes, and other intensive use zones. This capability also facilitates the use of ocean observations from animal-borne sensors in operational ocean forecasting models. Such near real-time data provision requires rapid, reliable quality control to deal with error-prone Argos locations. Methods: We formulate a continuous-time state-space model to filter the three types of Argos location data (Least-Squares, Kalman filter, and Kalman smoother), accounting for irregular timing of observations. Our model is deliberately simple to ensure speed and reliability for automated, near real-time quality control of Argos location data. We validate the model by fitting to Argos locations collected from 61 individuals across 7 marine vertebrates and compare model-estimated locations to contemporaneous GPS locations. We then test assumptions that Argos Kalman filter/smoother error ellipses are unbiased, and that Argos Kalman smoother location accuracy cannot be improved by subsequent state-space modelling. Results: Estimation accuracy varied among species with Root Mean Squared Errors usually <5 km and these decreased with increasing data sampling rate and precision of Argos locations. Including a model parameter to inflate Argos error ellipse sizes in the north - south direction resulted in more accurate location estimates. Finally, in some cases the model appreciably improved the accuracy of the Argos Kalman smoother locations, which should not be possible if the smoother is using all available information. Conclusions: Our model provides quality-controlled locations from Argos Least-Squares or Kalman filter data with accuracy similar to or marginally better than Argos Kalman smoother data that are only available via fee-based reprocessing. Simplicity and ease of use make the model suitable both for automated quality control of near real-time Argos data and for manual use by researchers working with historical Argos data.

Original languageEnglish
Article number31
Number of pages13
JournalMovement Ecology
Volume8
DOIs
Publication statusPublished - 17 Jul 2020

Bibliographical note

Copyright the Author(s) 2020. Version archived for private and non-commercial use with the permission of the author/s and according to publisher conditions. For further rights please contact the publisher.

Keywords

  • Animal-borne sensors
  • Bio-telemetry
  • foieGras R package
  • Global Positioning System
  • Seabird
  • Pinniped
  • Sea turtle
  • Template Model Builder

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    Jonsen, I. D., Patterson, T. A., Costa, D. P., Doherty, P. D., Godley, B. J., Grecian, W. J., ... McMahon, C. R. (2020). A continuous-time state-space model for rapid quality control of Argos locations from animal-borne tags. Movement Ecology, 8, [31]. https://doi.org/10.1186/s40462-020-00217-7