TY - JOUR
T1 - Ab initio modeling of glycosyl torsions and anomeric effects in a model carbohydrate
T2 - 2-Ethoxy tetrahydropyran
AU - Woodcock, H. Lee
AU - Moran, Damian
AU - Pastor, Richard W.
AU - MacKerell, Alexander D.
AU - Brooks, Bernard R.
PY - 2007/7
Y1 - 2007/7
N2 - A range of ab initio calculations were carried out on the axial and equatorial anomers of the model carbohydrate 2-ethoxy tetrahydropyran to evaluate the level of theory required to accurately evaluate the glycosyl dihedral angle and the anomeric ratio. Vacuum CCSD(T)/CBS extrapolations at the global minimum yield ΔE = Eequatorial - Eaxial = 1.42 kcal/mol. When corrected for solvent (by the IEFPCM model), zero-point vibrations and entropy, ΔG298 = 0.49 kcal/mol, in excellent agreement with the experimental value of 0.47 ± 0.3 kcal/mol. A new additivity scheme, the layered composite method (LCM), yields ΔE to within 0.1 kcal/mol of the CCSD(T)/CBS result at a fraction of the computer requirements. Anomeric ratios and one-dimensional torsional surfaces generated by LCM and the even more efficient MP2/cc-pVTZ level of theory are in excellent agreement, indicating that the latter is suitable for force-field parameterization of carbohydrates. Hartree-Fock and density functional theory differ from CCSD(T)/CBS for ΔE by ∼1 kcal/mol; they show similar deviations in torsional surfaces evaluated from LCM. A comparison of vacuum and solvent-corrected one- and two-dimensional torsional surfaces indicates the equatorial form of 2-ethoxy tetrahydropyran is more sensitive to solvent than the axial.
AB - A range of ab initio calculations were carried out on the axial and equatorial anomers of the model carbohydrate 2-ethoxy tetrahydropyran to evaluate the level of theory required to accurately evaluate the glycosyl dihedral angle and the anomeric ratio. Vacuum CCSD(T)/CBS extrapolations at the global minimum yield ΔE = Eequatorial - Eaxial = 1.42 kcal/mol. When corrected for solvent (by the IEFPCM model), zero-point vibrations and entropy, ΔG298 = 0.49 kcal/mol, in excellent agreement with the experimental value of 0.47 ± 0.3 kcal/mol. A new additivity scheme, the layered composite method (LCM), yields ΔE to within 0.1 kcal/mol of the CCSD(T)/CBS result at a fraction of the computer requirements. Anomeric ratios and one-dimensional torsional surfaces generated by LCM and the even more efficient MP2/cc-pVTZ level of theory are in excellent agreement, indicating that the latter is suitable for force-field parameterization of carbohydrates. Hartree-Fock and density functional theory differ from CCSD(T)/CBS for ΔE by ∼1 kcal/mol; they show similar deviations in torsional surfaces evaluated from LCM. A comparison of vacuum and solvent-corrected one- and two-dimensional torsional surfaces indicates the equatorial form of 2-ethoxy tetrahydropyran is more sensitive to solvent than the axial.
UR - http://www.scopus.com/inward/record.url?scp=34447264731&partnerID=8YFLogxK
U2 - 10.1529/biophysj.106.099986
DO - 10.1529/biophysj.106.099986
M3 - Article
C2 - 17554075
AN - SCOPUS:34447264731
SN - 0006-3495
VL - 93
SP - 1
EP - 10
JO - Biophysical Journal
JF - Biophysical Journal
IS - 1
ER -