Advancing ecological research with ontologies

Joshua S. Madin*, Shawn Bowers, Mark P. Schildhauer, Matthew B. Jones

*Corresponding author for this work

Research output: Contribution to journalReview article

127 Citations (Scopus)

Abstract

Ecology is inherently cross-disciplinary, drawing together many types of information to address questions about the natural world. Finding and integrating relevant data to assist in these analyses is crucial, but is difficult owing to ambiguous terminology and the lack of sufficient information about datasets. Ontologies provide a formal mechanism for defining terms and their relationships, and can improve the location, interpretation and integration of data based on its inherent meaning. Ontologies have assisted other disciplines (e.g. molecular biology) in unifying and enriching descriptions of data, and ecology can benefit from similar approaches. We review ontology efforts in ecology, and describe how these can benefit research by enhancing the location and interpretation of relevant data for confronting crucial ecological questions.

Original languageEnglish
Pages (from-to)159-168
Number of pages10
JournalTrends in Ecology and Evolution
Volume23
Issue number3
DOIs
Publication statusPublished - Mar 2008

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