Applications of quantitative proteomics in plant research

Research output: Chapter in Book/Report/Conference proceedingChapterResearchpeer-review

Abstract

Over the past two decades, we witnessed significant technological advances in Proteomics. Methodology and instrumentation have developed remarkably and proteomics has become a priority field of research in biology. Furthermore, analysis of the entire proteome of many organisms became possible due to complete genome sequencing. The advances in mass spectrometry instrumentation and bioinformatics tools have advanced quantitative proteomics techniques, resulting in important contributions to the biological knowledge of plants. In this chapter, we highlight the recent applications of proteomics in plants, in both model and non-model species. We then discuss the pros and cons of the major quantitative approaches implemented in plant studies. Next, we describe the most studied post-translational modifications (PTMs) in plant research, and lastly, we review the challenges of bioinformatics data analysis in the plant proteomics field.

LanguageEnglish
Title of host publicationAgricultural proteomics volume 1
Subtitle of host publicationCrops, horticulture, farm animals, food, insect and microorganisms
EditorsGhasem Hosseini Salekdeh
Place of PublicationSwitzerland
PublisherSpringer, Springer Nature
Pages1-29
Number of pages29
Volume1
ISBN (Electronic)9783319432755
ISBN (Print)9783319432731
DOIs
Publication statusPublished - 1 Jan 2016

Fingerprint

Proteomics
proteomics
Research
instrumentation
Bioinformatics
Computational Biology
bioinformatics
post-translational modification
Proteome
Post Translational Protein Processing
proteome
Mass spectrometry
Mass Spectrometry
data analysis
Genes
mass spectrometry
Genome
Proteins
Biological Sciences
genome

Keywords

  • mass spectrometry
  • post-translational modification
  • quantitative proteomics

Cite this

Mirzaei, M., Wu, Y., Handler, D., Maher, T., Pascovici, D., Ravishankar, P., ... Willows, R. D. (2016). Applications of quantitative proteomics in plant research. In G. H. Salekdeh (Ed.), Agricultural proteomics volume 1: Crops, horticulture, farm animals, food, insect and microorganisms (Vol. 1, pp. 1-29). Switzerland: Springer, Springer Nature. https://doi.org/10.1007/978-3-319-43275-5_1
Mirzaei, Mehdi ; Wu, Yunqi ; Handler, David ; Maher, Tim ; Pascovici, Dana ; Ravishankar, Prathiba ; Moghaddam, Masoud Zabet ; Haynes, Paul A. ; Salekdeh, Ghasem Hosseini ; Chick, Joel M. ; Willows, Robert D. / Applications of quantitative proteomics in plant research. Agricultural proteomics volume 1: Crops, horticulture, farm animals, food, insect and microorganisms. editor / Ghasem Hosseini Salekdeh. Vol. 1 Switzerland : Springer, Springer Nature, 2016. pp. 1-29
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Mirzaei, M, Wu, Y, Handler, D, Maher, T, Pascovici, D, Ravishankar, P, Moghaddam, MZ, Haynes, PA, Salekdeh, GH, Chick, JM & Willows, RD 2016, Applications of quantitative proteomics in plant research. in GH Salekdeh (ed.), Agricultural proteomics volume 1: Crops, horticulture, farm animals, food, insect and microorganisms. vol. 1, Springer, Springer Nature, Switzerland, pp. 1-29. https://doi.org/10.1007/978-3-319-43275-5_1

Applications of quantitative proteomics in plant research. / Mirzaei, Mehdi; Wu, Yunqi; Handler, David; Maher, Tim; Pascovici, Dana; Ravishankar, Prathiba; Moghaddam, Masoud Zabet; Haynes, Paul A.; Salekdeh, Ghasem Hosseini; Chick, Joel M.; Willows, Robert D.

Agricultural proteomics volume 1: Crops, horticulture, farm animals, food, insect and microorganisms. ed. / Ghasem Hosseini Salekdeh. Vol. 1 Switzerland : Springer, Springer Nature, 2016. p. 1-29.

Research output: Chapter in Book/Report/Conference proceedingChapterResearchpeer-review

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Mirzaei M, Wu Y, Handler D, Maher T, Pascovici D, Ravishankar P et al. Applications of quantitative proteomics in plant research. In Salekdeh GH, editor, Agricultural proteomics volume 1: Crops, horticulture, farm animals, food, insect and microorganisms. Vol. 1. Switzerland: Springer, Springer Nature. 2016. p. 1-29 https://doi.org/10.1007/978-3-319-43275-5_1