ASGS: an alternative splicing graph web service

Durgaprasad Bollina; Bernett T K Lee; Tin Wee Tan; Shoba Ranganathan

doi:10.1093/nar/gkl268

ASGS: an alternative splicing graph web service

Durgaprasad Bollina, Bernett T K Lee, Tin Wee Tan, Shoba Ranganathan^*

^*Corresponding author for this work

Research output: Contribution to journal › Article › peer-review

13 Citations (Scopus)

48 Downloads (Pure)

Abstract

Alternative transcript diversity manifests itself a prime cause of complexity in higher eukaryotes. The Alternative Splicing Graph Server (ASGS) is a web service facilitating the systematic study of alternatively spliced genes of higher eukaryotes by generating splicing graphs for the compact visual representation of transcript diversity from a single gene. Taking a set of transcripts in General Feature Format as input, ASGS identifies distinct reference and variable exons, generates a transcript splicing graph, an exon summary, splicing events classification and a single line graph to facilitate experimental analysis. This freely available web service can be accessed at http://asgs.biolinfo.org.

Original language	English
Pages (from-to)	W444-W447
Number of pages	4
Journal	Nucleic Acids Research
Volume	34
Issue number	WEB. SERV. ISS.
DOIs	https://doi.org/10.1093/nar/gkl268
Publication status	Published - Jul 2006

Access to Document

10.1093/nar/gkl268

Publisher version (open access).pdfFinal published version, 77.6 KB

Cite this

@article{f40f921c8f324494bb50e150924330a9,

title = "ASGS: an alternative splicing graph web service",

abstract = "Alternative transcript diversity manifests itself a prime cause of complexity in higher eukaryotes. The Alternative Splicing Graph Server (ASGS) is a web service facilitating the systematic study of alternatively spliced genes of higher eukaryotes by generating splicing graphs for the compact visual representation of transcript diversity from a single gene. Taking a set of transcripts in General Feature Format as input, ASGS identifies distinct reference and variable exons, generates a transcript splicing graph, an exon summary, splicing events classification and a single line graph to facilitate experimental analysis. This freely available web service can be accessed at http://asgs.biolinfo.org.",

author = "Durgaprasad Bollina and Lee, {Bernett T K} and Tan, {Tin Wee} and Shoba Ranganathan",

year = "2006",

month = jul,

doi = "10.1093/nar/gkl268",

language = "English",

volume = "34",

pages = "W444--W447",

journal = "Nucleic Acids Research",

issn = "0305-1048",

publisher = "Oxford University Press",

number = "WEB. SERV. ISS.",

}

TY - JOUR

T1 - ASGS

T2 - an alternative splicing graph web service

AU - Bollina, Durgaprasad

AU - Lee, Bernett T K

AU - Tan, Tin Wee

AU - Ranganathan, Shoba

PY - 2006/7

Y1 - 2006/7

N2 - Alternative transcript diversity manifests itself a prime cause of complexity in higher eukaryotes. The Alternative Splicing Graph Server (ASGS) is a web service facilitating the systematic study of alternatively spliced genes of higher eukaryotes by generating splicing graphs for the compact visual representation of transcript diversity from a single gene. Taking a set of transcripts in General Feature Format as input, ASGS identifies distinct reference and variable exons, generates a transcript splicing graph, an exon summary, splicing events classification and a single line graph to facilitate experimental analysis. This freely available web service can be accessed at http://asgs.biolinfo.org.

AB - Alternative transcript diversity manifests itself a prime cause of complexity in higher eukaryotes. The Alternative Splicing Graph Server (ASGS) is a web service facilitating the systematic study of alternatively spliced genes of higher eukaryotes by generating splicing graphs for the compact visual representation of transcript diversity from a single gene. Taking a set of transcripts in General Feature Format as input, ASGS identifies distinct reference and variable exons, generates a transcript splicing graph, an exon summary, splicing events classification and a single line graph to facilitate experimental analysis. This freely available web service can be accessed at http://asgs.biolinfo.org.

UR - http://www.scopus.com/inward/record.url?scp=33747852037&partnerID=8YFLogxK

U2 - 10.1093/nar/gkl268

DO - 10.1093/nar/gkl268

M3 - Article

C2 - 16845045

AN - SCOPUS:33747852037

SN - 0305-1048

VL - 34

SP - W444-W447

JO - Nucleic Acids Research

JF - Nucleic Acids Research

IS - WEB. SERV. ISS.

ER -

ASGS: an alternative splicing graph web service

Abstract

Access to Document

Other files and links

Fingerprint

Cite this