B- and T-cell epitope mapping of human sapovirus capsid protein: an immunomics approach

M. Ruhul Amin, Mohammad S. Siddiqui, Diruba Ahmed, Firoz Ahmed, Anowar Hossain

Research output: Contribution to journalArticlepeer-review

4 Citations (Scopus)

Abstract

Human sapovirus is one of the major causes of viral gastroenteritis. Although the capsid protein (VP1) confers antigenic cross-reactivity, immunity against sapovirus is still unclear. Using immunoinformatics approach, we defined putative T- and B-cell epitopes of VP1 and mapped on to its predicted three-dimensional structure. Identified five putative T-cell epitopes also occupied the putative B-cell epitope region. These putative epitopes were conserved in all existing serotypes. Predicted epitopes can be generated through proteasome cleavage and may be useful in designing peptide-based subunit vaccine to confer both humoral and cell-mediated immunity.
Original languageEnglish
Pages (from-to)287-298
Number of pages12
JournalInternational Journal of Bioinformatics Research and Applications
Volume7
Issue number3
DOIs
Publication statusPublished - 2011
Externally publishedYes

Keywords

  • sapovirus
  • capsid protein
  • vaccine
  • homology modelling
  • epitope mapping

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