Building a plant DNA barcode reference library for a diverse tropical flora: an example from Queensland, Australia

Craig M. Costion; Andrew J. Lowe; Maurizio Rossetto; Robert M. Kooyman; Martin F. Breed; Andrew Ford; Darren M. Crayn

doi:10.3390/d8010005

Building a plant DNA barcode reference library for a diverse tropical flora: an example from Queensland, Australia

Craig M. Costion^*, Andrew J. Lowe, Maurizio Rossetto, Robert M. Kooyman, Martin F. Breed, Andrew Ford, Darren M. Crayn

^*Corresponding author for this work

Research output: Contribution to journal › Article › peer-review

11 Citations (Scopus)

21 Downloads (Pure)

Abstract

A foundation for a DNA barcode reference library for the tropical plants of Australia is presented here. A total of 1572 DNA barcode sequences are compiled from 848 tropical Queensland species. The dataset represents 35% of the total flora of Queensland's Wet Tropics Bioregion, 57% of its tree species and 28% of the shrub species. For approximately half of the sampled species, we investigated the occurrence of infraspecific molecular variation in DNA barcode loci rbcLa, matK, and the trnH-psbA intergenic spacer region across previously recognized biogeographic barriers. We found preliminary support for the notion that DNA barcode reference libraries can be used as a tool for inferring biogeographic patterns at regional scales. It is expected that this dataset will find applications in taxonomic, ecological, and applied conservation research.

Original language	English
Article number	5
Pages (from-to)	1-9
Number of pages	9
Journal	Diversity
Volume	8
Issue number	1
DOIs	https://doi.org/10.3390/d8010005
Publication status	Published - 1 Mar 2016

Bibliographical note

Copyright the Author(s) 2016. Version archived for private and non-commercial use with the permission of the author/s and according to publisher conditions. For further rights please contact the publisher.

Access to Document

10.3390/d8010005

Publisher version (open access).pdfFinal published version, 722 KB

Cite this

@article{54a66dde912540a0a7d9ca56d5e7f030,

title = "Building a plant DNA barcode reference library for a diverse tropical flora: an example from Queensland, Australia",

abstract = "A foundation for a DNA barcode reference library for the tropical plants of Australia is presented here. A total of 1572 DNA barcode sequences are compiled from 848 tropical Queensland species. The dataset represents 35% of the total flora of Queensland's Wet Tropics Bioregion, 57% of its tree species and 28% of the shrub species. For approximately half of the sampled species, we investigated the occurrence of infraspecific molecular variation in DNA barcode loci rbcLa, matK, and the trnH-psbA intergenic spacer region across previously recognized biogeographic barriers. We found preliminary support for the notion that DNA barcode reference libraries can be used as a tool for inferring biogeographic patterns at regional scales. It is expected that this dataset will find applications in taxonomic, ecological, and applied conservation research.",

author = "Costion, {Craig M.} and Lowe, {Andrew J.} and Maurizio Rossetto and Kooyman, {Robert M.} and Breed, {Martin F.} and Andrew Ford and Crayn, {Darren M.}",

note = "Copyright the Author(s) 2016. Version archived for private and non-commercial use with the permission of the author/s and according to publisher conditions. For further rights please contact the publisher.",

year = "2016",

month = mar,

day = "1",

doi = "10.3390/d8010005",

language = "English",

volume = "8",

pages = "1--9",

journal = "Diversity",

issn = "1424-2818",

publisher = "Multidisciplinary Digital Publishing Institute (MDPI)",

number = "1",

}

TY - JOUR

T1 - Building a plant DNA barcode reference library for a diverse tropical flora

T2 - an example from Queensland, Australia

AU - Costion, Craig M.

AU - Lowe, Andrew J.

AU - Rossetto, Maurizio

AU - Kooyman, Robert M.

AU - Breed, Martin F.

AU - Ford, Andrew

AU - Crayn, Darren M.

N1 - Copyright the Author(s) 2016. Version archived for private and non-commercial use with the permission of the author/s and according to publisher conditions. For further rights please contact the publisher.

PY - 2016/3/1

Y1 - 2016/3/1

N2 - A foundation for a DNA barcode reference library for the tropical plants of Australia is presented here. A total of 1572 DNA barcode sequences are compiled from 848 tropical Queensland species. The dataset represents 35% of the total flora of Queensland's Wet Tropics Bioregion, 57% of its tree species and 28% of the shrub species. For approximately half of the sampled species, we investigated the occurrence of infraspecific molecular variation in DNA barcode loci rbcLa, matK, and the trnH-psbA intergenic spacer region across previously recognized biogeographic barriers. We found preliminary support for the notion that DNA barcode reference libraries can be used as a tool for inferring biogeographic patterns at regional scales. It is expected that this dataset will find applications in taxonomic, ecological, and applied conservation research.

AB - A foundation for a DNA barcode reference library for the tropical plants of Australia is presented here. A total of 1572 DNA barcode sequences are compiled from 848 tropical Queensland species. The dataset represents 35% of the total flora of Queensland's Wet Tropics Bioregion, 57% of its tree species and 28% of the shrub species. For approximately half of the sampled species, we investigated the occurrence of infraspecific molecular variation in DNA barcode loci rbcLa, matK, and the trnH-psbA intergenic spacer region across previously recognized biogeographic barriers. We found preliminary support for the notion that DNA barcode reference libraries can be used as a tool for inferring biogeographic patterns at regional scales. It is expected that this dataset will find applications in taxonomic, ecological, and applied conservation research.

UR - http://www.scopus.com/inward/record.url?scp=84966349180&partnerID=8YFLogxK

U2 - 10.3390/d8010005

DO - 10.3390/d8010005

M3 - Article

AN - SCOPUS:84966349180

VL - 8

SP - 1

EP - 9

JO - Diversity

JF - Diversity

SN - 1424-2818

IS - 1

M1 - 5

ER -

Building a plant DNA barcode reference library for a diverse tropical flora: an example from Queensland, Australia

Abstract

Bibliographical note

Access to Document

Other files and links

Fingerprint

Cite this