Data standardisation in GlycoSuiteDB

C. A. Cooper*, M. J. Harrison, J. M. Webster, M. R. Wilkins, N. H. Packer

*Corresponding author for this work

Research output: Contribution to journalArticle

6 Citations (Scopus)

Abstract

GlycoSuiteDB, a database of glycan structures, has been constructed with an emphasis on quality, consistency and data integrity. Importance has been placed on making the database a reliable and useful resource for all researchers. This database can help researchers to identify what glycan structures are known to be attached to certain glycoproteins, as well as more generally identifying what types of glycan structures are associated with different states, for example, different species, tissues and diseases. To achieve this, a major effort has gone into data standardisation. Many rules and standards have been adopted, especially for representing glycan structure and biological source information. This paper describes some of the challenges faced during the continuous development of GlycoSuiteDB.

Original languageEnglish
Pages (from-to)297-309
Number of pages13
JournalPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing
Publication statusPublished - 2002
Externally publishedYes

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