EcoCyc: fusing model organism databases with systems biology

Ingrid M. Keseler; Amanda Mackie; Martin Peralta-Gil; Alberto Santos-Zavaleta; Socorro Gama-Castro; César Bonavides-Martínez; Carol Fulcher; Araceli M. Huerta; Anamika Kothari; Markus Krummenacker; Mario Latendresse; Luis Muñiz-Rascado; Quang Ong; Suzanne Paley; Imke Schröder; Alexander G. Shearer; Pallavi Subhraveti; Mike Travers; Deepika Weerasinghe; Verena Weiss; Julio Collado-Vides; Robert P. Gunsalus; Ian Paulsen; Peter D. Karp

doi:10.1093/nar/gks1027

EcoCyc: fusing model organism databases with systems biology

Ingrid M. Keseler^*, Amanda Mackie, Martin Peralta-Gil, Alberto Santos-Zavaleta, Socorro Gama-Castro, César Bonavides-Martínez, Carol Fulcher, Araceli M. Huerta, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Luis Muñiz-Rascado, Quang Ong, Suzanne Paley, Imke Schröder, Alexander G. Shearer, Pallavi Subhraveti, Mike Travers, Deepika Weerasinghe, Verena WeissJulio Collado-Vides, Robert P. Gunsalus, Ian Paulsen, Peter D. Karp

^*Corresponding author for this work

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Abstract

EcoCyc (http://EcoCyc.org) is a model organism database built on the genome sequence of Escherichia coli K-12 MG1655. Expert manual curation of the functions of individual E. coli gene products in EcoCyc has been based on information found in the experimental literature for E. coli K-12-derived strains. Updates to EcoCyc content continue to improve the comprehensive picture of E. coli biology. The utility of EcoCyc is enhanced by new tools available on the EcoCyc web site, and the development of EcoCyc as a teaching tool is increasing the impact of the knowledge collected in EcoCyc.

Original language	English
Pages (from-to)	D605-D612
Number of pages	8
Journal	Nucleic Acids Research
Volume	41
Issue number	D1
DOIs	https://doi.org/10.1093/nar/gks1027
Publication status	Published - 1 Jan 2013

Bibliographical note

Electronic version of article originally published in Nucleic Acids Research, Oxford University Press http://nar.oxfordjournals.org/. Archived with the permission of the author and according to publisher conditions. For further information see http://nar.oxfordjournals.org/misc/terms.dtl.

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Keseler, I. M., Mackie, A., Peralta-Gil, M., Santos-Zavaleta, A., Gama-Castro, S., Bonavides-Martínez, C., Fulcher, C., Huerta, A. M., Kothari, A., Krummenacker, M., Latendresse, M., Muñiz-Rascado, L., Ong, Q., Paley, S., Schröder, I., Shearer, A. G., Subhraveti, P., Travers, M., Weerasinghe, D., ... Karp, P. D. (2013). EcoCyc: fusing model organism databases with systems biology. Nucleic Acids Research, 41(D1), D605-D612. https://doi.org/10.1093/nar/gks1027

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abstract = "EcoCyc (http://EcoCyc.org) is a model organism database built on the genome sequence of Escherichia coli K-12 MG1655. Expert manual curation of the functions of individual E. coli gene products in EcoCyc has been based on information found in the experimental literature for E. coli K-12-derived strains. Updates to EcoCyc content continue to improve the comprehensive picture of E. coli biology. The utility of EcoCyc is enhanced by new tools available on the EcoCyc web site, and the development of EcoCyc as a teaching tool is increasing the impact of the knowledge collected in EcoCyc.",

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Keseler, IM, Mackie, A, Peralta-Gil, M, Santos-Zavaleta, A, Gama-Castro, S, Bonavides-Martínez, C, Fulcher, C, Huerta, AM, Kothari, A, Krummenacker, M, Latendresse, M, Muñiz-Rascado, L, Ong, Q, Paley, S, Schröder, I, Shearer, AG, Subhraveti, P, Travers, M, Weerasinghe, D, Weiss, V, Collado-Vides, J, Gunsalus, RP, Paulsen, I & Karp, PD 2013, 'EcoCyc: fusing model organism databases with systems biology', Nucleic Acids Research, vol. 41, no. D1, pp. D605-D612. https://doi.org/10.1093/nar/gks1027

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AU - Keseler, Ingrid M.

AU - Mackie, Amanda

AU - Peralta-Gil, Martin

AU - Santos-Zavaleta, Alberto

AU - Gama-Castro, Socorro

AU - Bonavides-Martínez, César

AU - Fulcher, Carol

AU - Huerta, Araceli M.

AU - Kothari, Anamika

AU - Krummenacker, Markus

AU - Latendresse, Mario

AU - Muñiz-Rascado, Luis

AU - Ong, Quang

AU - Paley, Suzanne

AU - Schröder, Imke

AU - Shearer, Alexander G.

AU - Subhraveti, Pallavi

AU - Travers, Mike

AU - Weerasinghe, Deepika

AU - Weiss, Verena

AU - Collado-Vides, Julio

AU - Gunsalus, Robert P.

AU - Paulsen, Ian

AU - Karp, Peter D.

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JO - Nucleic Acids Research

JF - Nucleic Acids Research

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EcoCyc: fusing model organism databases with systems biology

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