TY - JOUR
T1 - Ecological niche modeling in Maxent
T2 - The importance of model complexity and the performance of model selection criteria
AU - Warren, Dan L.
AU - Seifert, Stephanie N.
N1 - Copyright by the Ecological Society of America. Article published in Ecological applications, volume 21, issue 2, pages 335-342, by Dan L. Warren and Stephanie N. Seifert
PY - 2011/3
Y1 - 2011/3
N2 - Maxent, one of the most commonly used methods for inferring species distributions and environmental tolerances from occurrence data, allows users to fit models of arbitrary complexity. Model complexity is typically constrained via a process known as L1 regularization, but at present little guidance is available for setting the appropriate level of regularization, and the effects of inappropriately complex or simple models are largely unknown. In this study, we demonstrate the use of information criterion approaches to setting regularization in Maxent, and we compare models selected using information criteria to models selected using other criteria that are common in the literature. We evaluate model performance using occurrence data generated from a known ''true'' initial Maxent model, using several different metrics for model quality and transferability. We demonstrate that models that are inappropriately complex or inappropriately simple show reduced ability to infer habitat quality, reduced ability to infer the relative importance of variables in constraining species' distributions, and reduced transferability to other time periods. We also demonstrate that information criteria may offer significant advantages over the methods commonly used in the literature.
AB - Maxent, one of the most commonly used methods for inferring species distributions and environmental tolerances from occurrence data, allows users to fit models of arbitrary complexity. Model complexity is typically constrained via a process known as L1 regularization, but at present little guidance is available for setting the appropriate level of regularization, and the effects of inappropriately complex or simple models are largely unknown. In this study, we demonstrate the use of information criterion approaches to setting regularization in Maxent, and we compare models selected using information criteria to models selected using other criteria that are common in the literature. We evaluate model performance using occurrence data generated from a known ''true'' initial Maxent model, using several different metrics for model quality and transferability. We demonstrate that models that are inappropriately complex or inappropriately simple show reduced ability to infer habitat quality, reduced ability to infer the relative importance of variables in constraining species' distributions, and reduced transferability to other time periods. We also demonstrate that information criteria may offer significant advantages over the methods commonly used in the literature.
UR - http://www.scopus.com/inward/record.url?scp=79955545366&partnerID=8YFLogxK
U2 - 10.1890/10-1171.1
DO - 10.1890/10-1171.1
M3 - Article
C2 - 21563566
AN - SCOPUS:79955545366
SN - 1051-0761
VL - 21
SP - 335
EP - 342
JO - Ecological Applications
JF - Ecological Applications
IS - 2
ER -