Estimation of extended mixed models using latent classes and latent processes: The R package lcmm

Cécile Proust-Lima, Viviane Philipps, Benoit Liquet

Research output: Contribution to journalArticlepeer-review

170 Citations (Scopus)
28 Downloads (Pure)

Abstract

The R package lcmm provides a series of functions to estimate statistical models based on linear mixed model theory. It includes the estimation of mixed models and latent class mixed models for Gaussian longitudinal outcomes (hlme), curvilinear and ordinal univariate longitudinal outcomes (lcmm) and curvilinear multivariate outcomes (multlcmm), as well as joint latent class mixed models (Jointlcmm) for a (Gaussian or curvilinear) longitudinal outcome and a time-to-event outcome that can be possibly left-truncated right-censored and defined in a competing setting. Maximum likelihood esimators are obtained using a modified Marquardt algorithm with strict convergence criteria based on the parameters and likelihood stability, and on the negativity of the second derivatives. The package also provides various post-fit functions including goodness-of-fit analyses, classification, plots, predicted trajectories, individual dynamic prediction of the event and predictive accuracy assessment. This paper constitutes a companion paper to the package by introducing each family of models, the estimation technique, some implementation details and giving examples through a dataset on cognitive aging.

Original languageEnglish
Pages (from-to)1-56
Number of pages56
JournalJournal of Statistical Software
Volume78
Issue number2
DOIs
Publication statusPublished - Jun 2017
Externally publishedYes

Bibliographical note

Version archived for private and non-commercial use with the permission of the author/s and according to publisher conditions. For further rights please contact the publisher.

Keywords

  • curvilinearity
  • dynamic prediction
  • Fortran 90
  • growth mixture model
  • joint model
  • psychometric tests
  • R

Fingerprint

Dive into the research topics of 'Estimation of extended mixed models using latent classes and latent processes: The R package lcmm'. Together they form a unique fingerprint.

Cite this