EUROCarbDB: An open-access platform for glycoinformatics

Claus Wilhelm Von Der Lieth; Ana Ardá Freire; Dennis Blank; Matthew P. Campbell; Alessio Ceroni; David R. Damerell; Anne Dell; Raymond A. Dwek; Beat Ernst; Rasmus Fogh; Martin Frank; Hildegard Geyer; Rudolf Geyer; Mathew J. Harrison; Kim Henrick; Stefan Herget; William E. Hull; John Ionides; Hiren J. Joshi; Johannis P. Kamerling; Bas R. Leeflang; Thomas Lütteke; Magnus Lundborg; Kai Maass; Anthony Merry; René Ranzinger; Jimmy Rosen; Louise Royle; Pauline M. Rudd; Siegfried Schloissnig; Roland Stenutz; Wim F. Vranken; Göran Widmalm; Stuart M. Haslam

doi:10.1093/glycob/cwq188

EUROCarbDB: An open-access platform for glycoinformatics

Claus Wilhelm Von Der Lieth, Ana Ardá Freire, Dennis Blank, Matthew P. Campbell, Alessio Ceroni, David R. Damerell, Anne Dell, Raymond A. Dwek, Beat Ernst, Rasmus Fogh, Martin Frank, Hildegard Geyer, Rudolf Geyer, Mathew J. Harrison, Kim Henrick, Stefan Herget, William E. Hull, John Ionides, Hiren J. Joshi, Johannis P. KamerlingBas R. Leeflang, Thomas Lütteke, Magnus Lundborg, Kai Maass, Anthony Merry, René Ranzinger, Jimmy Rosen, Louise Royle, Pauline M. Rudd, Siegfried Schloissnig, Roland Stenutz, Wim F. Vranken, Göran Widmalm, Stuart M. Haslam

Research output: Contribution to journal › Article › peer-review

103 Citations (Scopus)

Abstract

The EUROCarbDB project is a design study for a technical framework, which provides sophisticated, freely accessible, open-source informatics tools and databases to support glycobiology and glycomic research. EUROCarbDB is a relational database containing glycan structures, their biological context and, when available, primary and interpreted analytical data from high-performance liquid chromatography, mass spectrometry and nuclear magnetic resonance experiments. Database content can be accessed via a web-based user interface. The database is complemented by a suite of glycoinformatics tools, specifically designed to assist the elucidation and submission of glycan structure and experimental data when used in conjunction with contemporary carbohydrate research workflows. All software tools and source code are licensed under the terms of the Lesser General Public License, and publicly contributed structures and data are freely accessible. The public test version of the web interface to the EUROCarbDB can be found at http://www.ebi.ac.uk/eurocarb.

Original language	English
Pages (from-to)	493-502
Number of pages	10
Journal	Glycobiology
Volume	21
Issue number	4
DOIs	https://doi.org/10.1093/glycob/cwq188
Publication status	Published - Apr 2011

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10.1093/glycob/cwq188

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Von Der Lieth, C. W., Freire, A. A., Blank, D., Campbell, M. P., Ceroni, A., Damerell, D. R., Dell, A., Dwek, R. A., Ernst, B., Fogh, R., Frank, M., Geyer, H., Geyer, R., Harrison, M. J., Henrick, K., Herget, S., Hull, W. E., Ionides, J., Joshi, H. J., ... Haslam, S. M. (2011). EUROCarbDB: An open-access platform for glycoinformatics. Glycobiology, 21(4), 493-502. https://doi.org/10.1093/glycob/cwq188

@article{86007645513b4787aaf0d9b74203e96d,

title = "EUROCarbDB: An open-access platform for glycoinformatics",

abstract = "The EUROCarbDB project is a design study for a technical framework, which provides sophisticated, freely accessible, open-source informatics tools and databases to support glycobiology and glycomic research. EUROCarbDB is a relational database containing glycan structures, their biological context and, when available, primary and interpreted analytical data from high-performance liquid chromatography, mass spectrometry and nuclear magnetic resonance experiments. Database content can be accessed via a web-based user interface. The database is complemented by a suite of glycoinformatics tools, specifically designed to assist the elucidation and submission of glycan structure and experimental data when used in conjunction with contemporary carbohydrate research workflows. All software tools and source code are licensed under the terms of the Lesser General Public License, and publicly contributed structures and data are freely accessible. The public test version of the web interface to the EUROCarbDB can be found at http://www.ebi.ac.uk/eurocarb.",

author = "{Von Der Lieth}, {Claus Wilhelm} and Freire, {Ana Ard{\'a}} and Dennis Blank and Campbell, {Matthew P.} and Alessio Ceroni and Damerell, {David R.} and Anne Dell and Dwek, {Raymond A.} and Beat Ernst and Rasmus Fogh and Martin Frank and Hildegard Geyer and Rudolf Geyer and Harrison, {Mathew J.} and Kim Henrick and Stefan Herget and Hull, {William E.} and John Ionides and Joshi, {Hiren J.} and Kamerling, {Johannis P.} and Leeflang, {Bas R.} and Thomas L{\"u}tteke and Magnus Lundborg and Kai Maass and Anthony Merry and Ren{\'e} Ranzinger and Jimmy Rosen and Louise Royle and Rudd, {Pauline M.} and Siegfried Schloissnig and Roland Stenutz and Vranken, {Wim F.} and G{\"o}ran Widmalm and Haslam, {Stuart M.}",

year = "2011",

month = apr,

doi = "10.1093/glycob/cwq188",

language = "English",

volume = "21",

pages = "493--502",

journal = "Glycobiology",

issn = "0959-6658",

publisher = "Oxford University Press",

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Von Der Lieth, CW, Freire, AA, Blank, D, Campbell, MP, Ceroni, A, Damerell, DR, Dell, A, Dwek, RA, Ernst, B, Fogh, R, Frank, M, Geyer, H, Geyer, R, Harrison, MJ, Henrick, K, Herget, S, Hull, WE, Ionides, J, Joshi, HJ, Kamerling, JP, Leeflang, BR, Lütteke, T, Lundborg, M, Maass, K, Merry, A, Ranzinger, R, Rosen, J, Royle, L, Rudd, PM, Schloissnig, S, Stenutz, R, Vranken, WF, Widmalm, G & Haslam, SM 2011, 'EUROCarbDB: An open-access platform for glycoinformatics', Glycobiology, vol. 21, no. 4, pp. 493-502. https://doi.org/10.1093/glycob/cwq188

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AU - Von Der Lieth, Claus Wilhelm

AU - Freire, Ana Ardá

AU - Blank, Dennis

AU - Campbell, Matthew P.

AU - Ceroni, Alessio

AU - Damerell, David R.

AU - Dell, Anne

AU - Dwek, Raymond A.

AU - Ernst, Beat

AU - Fogh, Rasmus

AU - Frank, Martin

AU - Geyer, Hildegard

AU - Geyer, Rudolf

AU - Harrison, Mathew J.

AU - Henrick, Kim

AU - Herget, Stefan

AU - Hull, William E.

AU - Ionides, John

AU - Joshi, Hiren J.

AU - Kamerling, Johannis P.

AU - Leeflang, Bas R.

AU - Lütteke, Thomas

AU - Lundborg, Magnus

AU - Maass, Kai

AU - Merry, Anthony

AU - Ranzinger, René

AU - Rosen, Jimmy

AU - Royle, Louise

AU - Rudd, Pauline M.

AU - Schloissnig, Siegfried

AU - Stenutz, Roland

AU - Vranken, Wim F.

AU - Widmalm, Göran

AU - Haslam, Stuart M.

PY - 2011/4

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N2 - The EUROCarbDB project is a design study for a technical framework, which provides sophisticated, freely accessible, open-source informatics tools and databases to support glycobiology and glycomic research. EUROCarbDB is a relational database containing glycan structures, their biological context and, when available, primary and interpreted analytical data from high-performance liquid chromatography, mass spectrometry and nuclear magnetic resonance experiments. Database content can be accessed via a web-based user interface. The database is complemented by a suite of glycoinformatics tools, specifically designed to assist the elucidation and submission of glycan structure and experimental data when used in conjunction with contemporary carbohydrate research workflows. All software tools and source code are licensed under the terms of the Lesser General Public License, and publicly contributed structures and data are freely accessible. The public test version of the web interface to the EUROCarbDB can be found at http://www.ebi.ac.uk/eurocarb.

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DO - 10.1093/glycob/cwq188

M3 - Article

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VL - 21

SP - 493

EP - 502

JO - Glycobiology

JF - Glycobiology

IS - 4

ER -

EUROCarbDB: An open-access platform for glycoinformatics

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