Abstract
In natural environments, plant and microbial communities continuously interact with each other as well as with the environment. Plant-associated microbial communities are critical to plant growth and health. However, the biological impact of microbial communities within natural habitats is not only attributed to the biological activities of a specific microbe, but are also impacted by the microbial communities as a whole. Hence, a deep understanding of the complexity of microbial systems cannot be achieved solely by monitoring certain microbes in isolation. The integration of omics data provides a unique opportunity to tackle long-term problems in the area of plant and microbial ecology. Environmental proteomics or metaproteomics provides a practical tool for a better understanding of the function, structure, dynamics and significance of plant-associated microbial communities in both natural and man-made environments. To begin this chapter, we will present the importance of plant associated microbial communities and their impact on plant growth and health. We will then progress to the application of different omics approaches, especially proteomics for large-scale protein analysis, in order to dissect the molecular basis of plant-microbial interactions in a post genomic era. Next we will examine the advantages of integrating omics data to give a comprehensive understanding of plant microbial communities toward the development of efficient management strategies that reduce the impact of environmental stress and control plant disease epidemiology. We will conclude with a real application of metaproteomics to manage a plant phytobiome, thereby promoting agricultural sustainability.
| Language | English |
|---|---|
| Title of host publication | Agricultural proteomics volume 1 |
| Subtitle of host publication | crops, horticulture, farm animals, food, insect and microorganisms |
| Editors | Ghasem Hosseini Salekdeh |
| Publisher | Springer, Springer Nature |
| Chapter | 5 |
| Pages | 87-103 |
| Number of pages | 17 |
| ISBN (Electronic) | 9783319432755 |
| ISBN (Print) | 9783319432731 |
| DOIs | |
| Publication status | Published - 1 Jan 2016 |
| Externally published | Yes |
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Keywords
- Mass spectrometry
- Microbial communities
- Plant-environment interactions
Cite this
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Holistic sequencing : moving forward from plant microbial proteomics to metaproteomics. / Khatabi, Behnam; Tabrizi, Neda Maleki; Salekdeh, Ghasem Hosseini.
Agricultural proteomics volume 1: crops, horticulture, farm animals, food, insect and microorganisms. ed. / Ghasem Hosseini Salekdeh. Springer, Springer Nature, 2016. p. 87-103.Research output: Chapter in Book/Report/Conference proceeding › Chapter › Research › peer-review
TY - CHAP
T1 - Holistic sequencing
T2 - moving forward from plant microbial proteomics to metaproteomics
AU - Khatabi, Behnam
AU - Tabrizi, Neda Maleki
AU - Salekdeh, Ghasem Hosseini
PY - 2016/1/1
Y1 - 2016/1/1
N2 - In natural environments, plant and microbial communities continuously interact with each other as well as with the environment. Plant-associated microbial communities are critical to plant growth and health. However, the biological impact of microbial communities within natural habitats is not only attributed to the biological activities of a specific microbe, but are also impacted by the microbial communities as a whole. Hence, a deep understanding of the complexity of microbial systems cannot be achieved solely by monitoring certain microbes in isolation. The integration of omics data provides a unique opportunity to tackle long-term problems in the area of plant and microbial ecology. Environmental proteomics or metaproteomics provides a practical tool for a better understanding of the function, structure, dynamics and significance of plant-associated microbial communities in both natural and man-made environments. To begin this chapter, we will present the importance of plant associated microbial communities and their impact on plant growth and health. We will then progress to the application of different omics approaches, especially proteomics for large-scale protein analysis, in order to dissect the molecular basis of plant-microbial interactions in a post genomic era. Next we will examine the advantages of integrating omics data to give a comprehensive understanding of plant microbial communities toward the development of efficient management strategies that reduce the impact of environmental stress and control plant disease epidemiology. We will conclude with a real application of metaproteomics to manage a plant phytobiome, thereby promoting agricultural sustainability.
AB - In natural environments, plant and microbial communities continuously interact with each other as well as with the environment. Plant-associated microbial communities are critical to plant growth and health. However, the biological impact of microbial communities within natural habitats is not only attributed to the biological activities of a specific microbe, but are also impacted by the microbial communities as a whole. Hence, a deep understanding of the complexity of microbial systems cannot be achieved solely by monitoring certain microbes in isolation. The integration of omics data provides a unique opportunity to tackle long-term problems in the area of plant and microbial ecology. Environmental proteomics or metaproteomics provides a practical tool for a better understanding of the function, structure, dynamics and significance of plant-associated microbial communities in both natural and man-made environments. To begin this chapter, we will present the importance of plant associated microbial communities and their impact on plant growth and health. We will then progress to the application of different omics approaches, especially proteomics for large-scale protein analysis, in order to dissect the molecular basis of plant-microbial interactions in a post genomic era. Next we will examine the advantages of integrating omics data to give a comprehensive understanding of plant microbial communities toward the development of efficient management strategies that reduce the impact of environmental stress and control plant disease epidemiology. We will conclude with a real application of metaproteomics to manage a plant phytobiome, thereby promoting agricultural sustainability.
KW - Mass spectrometry
KW - Microbial communities
KW - Plant-environment interactions
UR - http://www.scopus.com/inward/record.url?scp=85006467146&partnerID=8YFLogxK
U2 - 10.1007/978-3-319-43275-5_5
DO - 10.1007/978-3-319-43275-5_5
M3 - Chapter
SN - 9783319432731
SP - 87
EP - 103
BT - Agricultural proteomics volume 1
A2 - Salekdeh, Ghasem Hosseini
PB - Springer, Springer Nature
ER -