Longitudinal brain MR retrieval with diffeomorphic demons registration: what happened to those patients with similar changes?

Siqi Liu; Sidong Liu; Fan Zhang; Weidong Cai; Sonia Pujol; Ron Kikinis; Dagan Feng

doi:10.1109/ISBI.2015.7163942

Longitudinal brain MR retrieval with diffeomorphic demons registration: what happened to those patients with similar changes?

Siqi Liu, Sidong Liu, Fan Zhang, Weidong Cai, Sonia Pujol, Ron Kikinis, Dagan Feng

Research output: Chapter in Book/Report/Conference proceeding › Conference proceeding contribution › peer-review

7 Citations (Scopus)

Abstract

Current medical content-based retrieval (MCBR) systems for neuroimaging data mainly focus on retrieving the cross-sectional neuroimaging data with similar regional or global measurements. The longitudinal pathological changes along different time-points are usually neglected in such MCBR systems. We propose the cross-registration based retrieval for longitudinal MR data to retrieve patients with similar structural changes as an extension to the existing MCBR systems. The diffeomorphic demons registration is used to extract the tissue deformation between two adjacent MR volumes. An asymmetric square dissimilarity matrix is designed for indexing the patient changes within a specific interval. A visual demonstration is given to show the registration displacement fields of the query as compared to the simulated results. The experimental performance with the mean average precision (mAP) and the average top-K accuracy (aACC) are reported for evaluation.

Original language	English
Title of host publication	2015 IEEE 12th International Symposium on Biomedical Imaging, ISBI 2015
Publisher	Institute of Electrical and Electronics Engineers (IEEE)
Pages	588-591
Number of pages	4
Volume	2015-July
ISBN (Electronic)	9781479923748
DOIs	https://doi.org/10.1109/ISBI.2015.7163942
Publication status	Published - 1 Jan 2015
Externally published	Yes
Event	12th IEEE International Symposium on Biomedical Imaging, ISBI 2015 - Brooklyn, United States Duration: 16 Apr 2015 → 19 Apr 2015

Conference

Conference	12th IEEE International Symposium on Biomedical Imaging, ISBI 2015
Country/Territory	United States
City	Brooklyn
Period	16/04/15 → 19/04/15

Keywords

ADNI
Content-Based Retrieval
Longitudinal Neuroimaging Analysis
MRI

Access to Document

10.1109/ISBI.2015.7163942

Cite this

Liu, S., Liu, S., Zhang, F., Cai, W., Pujol, S., Kikinis, R., & Feng, D. (2015). Longitudinal brain MR retrieval with diffeomorphic demons registration: what happened to those patients with similar changes? In 2015 IEEE 12th International Symposium on Biomedical Imaging, ISBI 2015 (Vol. 2015-July, pp. 588-591). [7163942] Institute of Electrical and Electronics Engineers (IEEE). https://doi.org/10.1109/ISBI.2015.7163942

@inproceedings{41ce58ab14994fe19742f6de29d7216b,

title = "Longitudinal brain MR retrieval with diffeomorphic demons registration: what happened to those patients with similar changes?",

abstract = "Current medical content-based retrieval (MCBR) systems for neuroimaging data mainly focus on retrieving the cross-sectional neuroimaging data with similar regional or global measurements. The longitudinal pathological changes along different time-points are usually neglected in such MCBR systems. We propose the cross-registration based retrieval for longitudinal MR data to retrieve patients with similar structural changes as an extension to the existing MCBR systems. The diffeomorphic demons registration is used to extract the tissue deformation between two adjacent MR volumes. An asymmetric square dissimilarity matrix is designed for indexing the patient changes within a specific interval. A visual demonstration is given to show the registration displacement fields of the query as compared to the simulated results. The experimental performance with the mean average precision (mAP) and the average top-K accuracy (aACC) are reported for evaluation.",

keywords = "ADNI, Content-Based Retrieval, Longitudinal Neuroimaging Analysis, MRI",

author = "Siqi Liu and Sidong Liu and Fan Zhang and Weidong Cai and Sonia Pujol and Ron Kikinis and Dagan Feng",

year = "2015",

month = jan,

day = "1",

doi = "10.1109/ISBI.2015.7163942",

language = "English",

volume = "2015-July",

pages = "588--591",

booktitle = "2015 IEEE 12th International Symposium on Biomedical Imaging, ISBI 2015",

publisher = "Institute of Electrical and Electronics Engineers (IEEE)",

address = "United States",

note = "12th IEEE International Symposium on Biomedical Imaging, ISBI 2015 ; Conference date: 16-04-2015 Through 19-04-2015",

}

Liu, S, Liu, S, Zhang, F, Cai, W, Pujol, S, Kikinis, R & Feng, D 2015, Longitudinal brain MR retrieval with diffeomorphic demons registration: what happened to those patients with similar changes? in 2015 IEEE 12th International Symposium on Biomedical Imaging, ISBI 2015. vol. 2015-July, 7163942, Institute of Electrical and Electronics Engineers (IEEE), pp. 588-591, 12th IEEE International Symposium on Biomedical Imaging, ISBI 2015, Brooklyn, United States, 16/04/15. https://doi.org/10.1109/ISBI.2015.7163942

Longitudinal brain MR retrieval with diffeomorphic demons registration : what happened to those patients with similar changes? / Liu, Siqi; Liu, Sidong; Zhang, Fan et al.

2015 IEEE 12th International Symposium on Biomedical Imaging, ISBI 2015. Vol. 2015-July Institute of Electrical and Electronics Engineers (IEEE), 2015. p. 588-591 7163942.

Research output: Chapter in Book/Report/Conference proceeding › Conference proceeding contribution › peer-review

TY - GEN

T1 - Longitudinal brain MR retrieval with diffeomorphic demons registration

T2 - 12th IEEE International Symposium on Biomedical Imaging, ISBI 2015

AU - Liu, Siqi

AU - Liu, Sidong

AU - Zhang, Fan

AU - Cai, Weidong

AU - Pujol, Sonia

AU - Kikinis, Ron

AU - Feng, Dagan

PY - 2015/1/1

Y1 - 2015/1/1

N2 - Current medical content-based retrieval (MCBR) systems for neuroimaging data mainly focus on retrieving the cross-sectional neuroimaging data with similar regional or global measurements. The longitudinal pathological changes along different time-points are usually neglected in such MCBR systems. We propose the cross-registration based retrieval for longitudinal MR data to retrieve patients with similar structural changes as an extension to the existing MCBR systems. The diffeomorphic demons registration is used to extract the tissue deformation between two adjacent MR volumes. An asymmetric square dissimilarity matrix is designed for indexing the patient changes within a specific interval. A visual demonstration is given to show the registration displacement fields of the query as compared to the simulated results. The experimental performance with the mean average precision (mAP) and the average top-K accuracy (aACC) are reported for evaluation.

AB - Current medical content-based retrieval (MCBR) systems for neuroimaging data mainly focus on retrieving the cross-sectional neuroimaging data with similar regional or global measurements. The longitudinal pathological changes along different time-points are usually neglected in such MCBR systems. We propose the cross-registration based retrieval for longitudinal MR data to retrieve patients with similar structural changes as an extension to the existing MCBR systems. The diffeomorphic demons registration is used to extract the tissue deformation between two adjacent MR volumes. An asymmetric square dissimilarity matrix is designed for indexing the patient changes within a specific interval. A visual demonstration is given to show the registration displacement fields of the query as compared to the simulated results. The experimental performance with the mean average precision (mAP) and the average top-K accuracy (aACC) are reported for evaluation.

KW - ADNI

KW - Content-Based Retrieval

KW - Longitudinal Neuroimaging Analysis

KW - MRI

UR - http://www.scopus.com/inward/record.url?scp=84944312952&partnerID=8YFLogxK

U2 - 10.1109/ISBI.2015.7163942

DO - 10.1109/ISBI.2015.7163942

M3 - Conference proceeding contribution

AN - SCOPUS:84944312952

VL - 2015-July

SP - 588

EP - 591

BT - 2015 IEEE 12th International Symposium on Biomedical Imaging, ISBI 2015

PB - Institute of Electrical and Electronics Engineers (IEEE)

Y2 - 16 April 2015 through 19 April 2015

ER -

Liu S, Liu S, Zhang F, Cai W, Pujol S, Kikinis R et al. Longitudinal brain MR retrieval with diffeomorphic demons registration: what happened to those patients with similar changes? In 2015 IEEE 12th International Symposium on Biomedical Imaging, ISBI 2015. Vol. 2015-July. Institute of Electrical and Electronics Engineers (IEEE). 2015. p. 588-591. 7163942 https://doi.org/10.1109/ISBI.2015.7163942

Longitudinal brain MR retrieval with diffeomorphic demons registration: what happened to those patients with similar changes?

Abstract

Conference

Keywords

Access to Document

Other files and links

Fingerprint

Cite this