Meeting report from the second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop

Carsten Kettner; Dawn Field; Susanna Assunta Sansone; Chris Taylor; Jan Aerts; Nigel Binns; Andrew Blake; Cedrik M. Britten; Ario Marco; Jennifer Fostel; Pascale Gaudet; Alejandra González-Beltrán; Nigel Hardy; Jan Hellemans; Henning Hermjakob; Nick Juty; Jim Leebens-Mack; Eamonn Maguire; Steffen Neumann; Sandra Orchard; Helen Parkinson; William Piel; Shoba Ranganathan; Philippe Rocca-Serra; Annapaola Santarsiero; David Shotton; Peter Sterk; Andreas Untergasser; Patricia L. Whetzel

doi:10.4056/sigs.147362

Meeting report from the second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop

Carsten Kettner, Dawn Field^*, Susanna Assunta Sansone, Chris Taylor, Jan Aerts, Nigel Binns, Andrew Blake, Cedrik M. Britten, Ario Marco, Jennifer Fostel, Pascale Gaudet, Alejandra González-Beltrán, Nigel Hardy, Jan Hellemans, Henning Hermjakob, Nick Juty, Jim Leebens-Mack, Eamonn Maguire, Steffen Neumann, Sandra OrchardHelen Parkinson, William Piel, Shoba Ranganathan, Philippe Rocca-Serra, Annapaola Santarsiero, David Shotton, Peter Sterk, Andreas Untergasser, Patricia L. Whetzel

^*Corresponding author for this work

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Abstract

This report summarizes the proceedings of the second workshop of the 'Minimum Information for Biological and Biomedical Investigations' (MIBBI) consortium held on Dec 1-2, 2010 in Rüdesheim, Germany through the sponsorship of the Beilstein-Institute. MIBBI is an umbrella organization uniting communities developing Minimum Information (MI) checklists to standardize the description of data sets, the workflows by which they were generated and the scientific context for the work. This workshop brought together representatives of more than twenty communities to present the status of their MI checklists and plans for future development. Shared challenges and solutions were identified and the role of MIBBI in MI checklist development was discussed. The meeting featured some thirty presentations, wide-ranging discussions and breakout groups. The top outcomes of the two-day workshop as defined by the participants were: 1) the chance to share best practices and to identify areas of synergy; 2) defining a series of tasks for updating the MIBBI Portal; 3) reemphasizing the need to maintain independent MI checklists for various communities while leveraging common terms and workflow elements contained in multiple checklists; and 4) revision of the concept of the MIBBI Foundry to focus on the creation of a core set of MIBBI modules intended for reuse by individual MI checklist projects while maintaining the integrity of each MI project. Further information about MIBBI and its range of activities can be found at http://mibbi.org/ .

Original language	English
Pages (from-to)	259-266
Number of pages	8
Journal	Standards in Genomic Sciences
Volume	3
Issue number	3
DOIs	https://doi.org/10.4056/sigs.147362
Publication status	Published - 31 Dec 2010

Bibliographical note

Version archived for private and non-commercial use with the permission of the author/s and according to publisher conditions. For further rights please contact the publisher.

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10.4056/sigs.147362

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Kettner, C., Field, D., Sansone, S. A., Taylor, C., Aerts, J., Binns, N., Blake, A., Britten, C. M., Marco, A., Fostel, J., Gaudet, P., González-Beltrán, A., Hardy, N., Hellemans, J., Hermjakob, H., Juty, N., Leebens-Mack, J., Maguire, E., Neumann, S., ... Whetzel, P. L. (2010). Meeting report from the second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop. Standards in Genomic Sciences, 3(3), 259-266. https://doi.org/10.4056/sigs.147362

@article{0a70d6ff6a78465ca7d9d874558a5f43,

title = "Meeting report from the second {"}Minimum Information for Biological and Biomedical Investigations{"} (MIBBI) workshop",

abstract = "This report summarizes the proceedings of the second workshop of the 'Minimum Information for Biological and Biomedical Investigations' (MIBBI) consortium held on Dec 1-2, 2010 in R{\"u}desheim, Germany through the sponsorship of the Beilstein-Institute. MIBBI is an umbrella organization uniting communities developing Minimum Information (MI) checklists to standardize the description of data sets, the workflows by which they were generated and the scientific context for the work. This workshop brought together representatives of more than twenty communities to present the status of their MI checklists and plans for future development. Shared challenges and solutions were identified and the role of MIBBI in MI checklist development was discussed. The meeting featured some thirty presentations, wide-ranging discussions and breakout groups. The top outcomes of the two-day workshop as defined by the participants were: 1) the chance to share best practices and to identify areas of synergy; 2) defining a series of tasks for updating the MIBBI Portal; 3) reemphasizing the need to maintain independent MI checklists for various communities while leveraging common terms and workflow elements contained in multiple checklists; and 4) revision of the concept of the MIBBI Foundry to focus on the creation of a core set of MIBBI modules intended for reuse by individual MI checklist projects while maintaining the integrity of each MI project. Further information about MIBBI and its range of activities can be found at http://mibbi.org/ .",

author = "Carsten Kettner and Dawn Field and Sansone, {Susanna Assunta} and Chris Taylor and Jan Aerts and Nigel Binns and Andrew Blake and Britten, {Cedrik M.} and Ario Marco and Jennifer Fostel and Pascale Gaudet and Alejandra Gonz{\'a}lez-Beltr{\'a}n and Nigel Hardy and Jan Hellemans and Henning Hermjakob and Nick Juty and Jim Leebens-Mack and Eamonn Maguire and Steffen Neumann and Sandra Orchard and Helen Parkinson and William Piel and Shoba Ranganathan and Philippe Rocca-Serra and Annapaola Santarsiero and David Shotton and Peter Sterk and Andreas Untergasser and Whetzel, {Patricia L.}",

note = "Version archived for private and non-commercial use with the permission of the author/s and according to publisher conditions. For further rights please contact the publisher.",

year = "2010",

month = dec,

day = "31",

doi = "10.4056/sigs.147362",

language = "English",

volume = "3",

pages = "259--266",

journal = "Standards in Genomic Sciences",

issn = "1944-3277",

publisher = "Springer, Springer Nature",

number = "3",

}

Kettner, C, Field, D, Sansone, SA, Taylor, C, Aerts, J, Binns, N, Blake, A, Britten, CM, Marco, A, Fostel, J, Gaudet, P, González-Beltrán, A, Hardy, N, Hellemans, J, Hermjakob, H, Juty, N, Leebens-Mack, J, Maguire, E, Neumann, S, Orchard, S, Parkinson, H, Piel, W, Ranganathan, S, Rocca-Serra, P, Santarsiero, A, Shotton, D, Sterk, P, Untergasser, A & Whetzel, PL 2010, 'Meeting report from the second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop', Standards in Genomic Sciences, vol. 3, no. 3, pp. 259-266. https://doi.org/10.4056/sigs.147362

TY - JOUR

T1 - Meeting report from the second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop

AU - Kettner, Carsten

AU - Field, Dawn

AU - Sansone, Susanna Assunta

AU - Taylor, Chris

AU - Aerts, Jan

AU - Binns, Nigel

AU - Blake, Andrew

AU - Britten, Cedrik M.

AU - Marco, Ario

AU - Fostel, Jennifer

AU - Gaudet, Pascale

AU - González-Beltrán, Alejandra

AU - Hardy, Nigel

AU - Hellemans, Jan

AU - Hermjakob, Henning

AU - Juty, Nick

AU - Leebens-Mack, Jim

AU - Maguire, Eamonn

AU - Neumann, Steffen

AU - Orchard, Sandra

AU - Parkinson, Helen

AU - Piel, William

AU - Ranganathan, Shoba

AU - Rocca-Serra, Philippe

AU - Santarsiero, Annapaola

AU - Shotton, David

AU - Sterk, Peter

AU - Untergasser, Andreas

AU - Whetzel, Patricia L.

N1 - Version archived for private and non-commercial use with the permission of the author/s and according to publisher conditions. For further rights please contact the publisher.

PY - 2010/12/31

Y1 - 2010/12/31

N2 - This report summarizes the proceedings of the second workshop of the 'Minimum Information for Biological and Biomedical Investigations' (MIBBI) consortium held on Dec 1-2, 2010 in Rüdesheim, Germany through the sponsorship of the Beilstein-Institute. MIBBI is an umbrella organization uniting communities developing Minimum Information (MI) checklists to standardize the description of data sets, the workflows by which they were generated and the scientific context for the work. This workshop brought together representatives of more than twenty communities to present the status of their MI checklists and plans for future development. Shared challenges and solutions were identified and the role of MIBBI in MI checklist development was discussed. The meeting featured some thirty presentations, wide-ranging discussions and breakout groups. The top outcomes of the two-day workshop as defined by the participants were: 1) the chance to share best practices and to identify areas of synergy; 2) defining a series of tasks for updating the MIBBI Portal; 3) reemphasizing the need to maintain independent MI checklists for various communities while leveraging common terms and workflow elements contained in multiple checklists; and 4) revision of the concept of the MIBBI Foundry to focus on the creation of a core set of MIBBI modules intended for reuse by individual MI checklist projects while maintaining the integrity of each MI project. Further information about MIBBI and its range of activities can be found at http://mibbi.org/ .

AB - This report summarizes the proceedings of the second workshop of the 'Minimum Information for Biological and Biomedical Investigations' (MIBBI) consortium held on Dec 1-2, 2010 in Rüdesheim, Germany through the sponsorship of the Beilstein-Institute. MIBBI is an umbrella organization uniting communities developing Minimum Information (MI) checklists to standardize the description of data sets, the workflows by which they were generated and the scientific context for the work. This workshop brought together representatives of more than twenty communities to present the status of their MI checklists and plans for future development. Shared challenges and solutions were identified and the role of MIBBI in MI checklist development was discussed. The meeting featured some thirty presentations, wide-ranging discussions and breakout groups. The top outcomes of the two-day workshop as defined by the participants were: 1) the chance to share best practices and to identify areas of synergy; 2) defining a series of tasks for updating the MIBBI Portal; 3) reemphasizing the need to maintain independent MI checklists for various communities while leveraging common terms and workflow elements contained in multiple checklists; and 4) revision of the concept of the MIBBI Foundry to focus on the creation of a core set of MIBBI modules intended for reuse by individual MI checklist projects while maintaining the integrity of each MI project. Further information about MIBBI and its range of activities can be found at http://mibbi.org/ .

U2 - 10.4056/sigs.147362

DO - 10.4056/sigs.147362

M3 - Other journal contribution

C2 - 21304730

SN - 1944-3277

VL - 3

SP - 259

EP - 266

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

IS - 3

ER -

Meeting report from the second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop

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