MIRAGE: the minimum information required for a glycomics experiment

William S. York; Sanjay Agravat; Kiyoko F. Aoki-Kinoshita; Ryan Mcbride; Matthew P. Campbell; Catherine E. Costello; Anne Dell; Ten Feizi; Stuart M. Haslam; Niclas Karlsson; Kay Hooi Khoo; Daniel Kolarich; Yan Liu; Milos Novotny; Nicolle H. Packer; James C. Paulson; Erdmann Rapp; Rene Ranzinger; Pauline M. Rudd; David F. Smith; Weston B. Struwe; Michael Tiemeyer; Lance Wells; Joseph Zaia; Carsten Kettner

doi:10.1093/glycob/cwu018

MIRAGE: the minimum information required for a glycomics experiment

William S. York, Sanjay Agravat, Kiyoko F. Aoki-Kinoshita, Ryan Mcbride, Matthew P. Campbell, Catherine E. Costello, Anne Dell, Ten Feizi, Stuart M. Haslam, Niclas Karlsson, Kay Hooi Khoo, Daniel Kolarich, Yan Liu, Milos Novotny, Nicolle H. Packer, James C. Paulson, Erdmann Rapp, Rene Ranzinger, Pauline M. Rudd, David F. SmithWeston B. Struwe, Michael Tiemeyer, Lance Wells, Joseph Zaia, Carsten Kettner^*

^*Corresponding author for this work

Research output: Contribution to journal › Article › peer-review

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Abstract

The MIRAGE (minimum information required for a glycomics experiment) initiative was founded in Seattle, WA, in November 2011 in order to develop guidelines for reporting the qualitative and quantitative results obtained by diverse types of glycomics analyses, including the conditions and techniques that were applied to prepare the glycans for analysis and generate the primary data along with the tools and parameters that were used to process and annotate this data. These guidelines must address a broad range of issues, as glycomics data are inherently complex and are generated using diverse methods, including mass spectrometry (MS), chromatography, glycan array-binding assays, nuclear magnetic resonance (NMR) and other rapidly developing technologies. The acceptance of these guidelines by scientists conducting research on biological systems in which glycans have a significant role will facilitate the evaluation and reproduction of glycomics experiments and data that is reported in scientific journals and uploaded to glycomics databases. As a first step, MIRAGE guidelines for glycan analysis by MS have been recently published (Kolarich D, Rapp E, Struwe WB, Haslam SM, Zaia J., et al. 2013. The minimum information required for a glycomics experiment (MIRAGE) project-Improving the standards for reporting mass spectrometry-based glycoanalytic data. Mol. Cell Proteomics. 12:991-995), allowing them to be implemented and evaluated in the context of real-world glycobiology research. In this paper, we set out the historical context, organization structure and overarching objectives of the MIRAGE initiative.

Original language	English
Pages (from-to)	402-406
Number of pages	5
Journal	Glycobiology
Volume	24
Issue number	5
DOIs	https://doi.org/10.1093/glycob/cwu018
Publication status	Published - May 2014

Bibliographical note

Copyright 2014 the author(s). First published in Glycobiology, 24(5), pp. 402-406. The original publication is available at http://www.doi.org/10.1093/glycob/cwu018, published by Oxford University Press. Version archived for private and non-commercial use with the permission of the author/s and according to publisher conditions. For further rights please contact the publisher.

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10.1093/glycob/cwu018

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York, W. S., Agravat, S., Aoki-Kinoshita, K. F., Mcbride, R., Campbell, M. P., Costello, C. E., Dell, A., Feizi, T., Haslam, S. M., Karlsson, N., Khoo, K. H., Kolarich, D., Liu, Y., Novotny, M., Packer, N. H., Paulson, J. C., Rapp, E., Ranzinger, R., Rudd, P. M., ... Kettner, C. (2014). MIRAGE: the minimum information required for a glycomics experiment. Glycobiology, 24(5), 402-406. https://doi.org/10.1093/glycob/cwu018

@article{2357f78810dc43b982bac54bf89fd832,

title = "MIRAGE: the minimum information required for a glycomics experiment",

abstract = "The MIRAGE (minimum information required for a glycomics experiment) initiative was founded in Seattle, WA, in November 2011 in order to develop guidelines for reporting the qualitative and quantitative results obtained by diverse types of glycomics analyses, including the conditions and techniques that were applied to prepare the glycans for analysis and generate the primary data along with the tools and parameters that were used to process and annotate this data. These guidelines must address a broad range of issues, as glycomics data are inherently complex and are generated using diverse methods, including mass spectrometry (MS), chromatography, glycan array-binding assays, nuclear magnetic resonance (NMR) and other rapidly developing technologies. The acceptance of these guidelines by scientists conducting research on biological systems in which glycans have a significant role will facilitate the evaluation and reproduction of glycomics experiments and data that is reported in scientific journals and uploaded to glycomics databases. As a first step, MIRAGE guidelines for glycan analysis by MS have been recently published (Kolarich D, Rapp E, Struwe WB, Haslam SM, Zaia J., et al. 2013. The minimum information required for a glycomics experiment (MIRAGE) project-Improving the standards for reporting mass spectrometry-based glycoanalytic data. Mol. Cell Proteomics. 12:991-995), allowing them to be implemented and evaluated in the context of real-world glycobiology research. In this paper, we set out the historical context, organization structure and overarching objectives of the MIRAGE initiative.",

author = "York, \{William S.\} and Sanjay Agravat and Aoki-Kinoshita, \{Kiyoko F.\} and Ryan Mcbride and Campbell, \{Matthew P.\} and Costello, \{Catherine E.\} and Anne Dell and Ten Feizi and Haslam, \{Stuart M.\} and Niclas Karlsson and Khoo, \{Kay Hooi\} and Daniel Kolarich and Yan Liu and Milos Novotny and Packer, \{Nicolle H.\} and Paulson, \{James C.\} and Erdmann Rapp and Rene Ranzinger and Rudd, \{Pauline M.\} and Smith, \{David F.\} and Struwe, \{Weston B.\} and Michael Tiemeyer and Lance Wells and Joseph Zaia and Carsten Kettner",

note = "Copyright 2014 the author(s). First published in Glycobiology, 24(5), pp. 402-406. The original publication is available at http://www.doi.org/10.1093/glycob/cwu018, published by Oxford University Press. Version archived for private and non-commercial use with the permission of the author/s and according to publisher conditions. For further rights please contact the publisher.",

year = "2014",

month = may,

doi = "10.1093/glycob/cwu018",

language = "English",

volume = "24",

pages = "402--406",

journal = "Glycobiology",

issn = "0959-6658",

publisher = "Oxford University Press",

number = "5",

}

York, WS, Agravat, S, Aoki-Kinoshita, KF, Mcbride, R, Campbell, MP, Costello, CE, Dell, A, Feizi, T, Haslam, SM, Karlsson, N, Khoo, KH, Kolarich, D, Liu, Y, Novotny, M, Packer, NH, Paulson, JC, Rapp, E, Ranzinger, R, Rudd, PM, Smith, DF, Struwe, WB, Tiemeyer, M, Wells, L, Zaia, J & Kettner, C 2014, 'MIRAGE: the minimum information required for a glycomics experiment', Glycobiology, vol. 24, no. 5, pp. 402-406. https://doi.org/10.1093/glycob/cwu018

TY - JOUR

T1 - MIRAGE

T2 - the minimum information required for a glycomics experiment

AU - York, William S.

AU - Agravat, Sanjay

AU - Aoki-Kinoshita, Kiyoko F.

AU - Mcbride, Ryan

AU - Campbell, Matthew P.

AU - Costello, Catherine E.

AU - Dell, Anne

AU - Feizi, Ten

AU - Haslam, Stuart M.

AU - Karlsson, Niclas

AU - Khoo, Kay Hooi

AU - Kolarich, Daniel

AU - Liu, Yan

AU - Novotny, Milos

AU - Packer, Nicolle H.

AU - Paulson, James C.

AU - Rapp, Erdmann

AU - Ranzinger, Rene

AU - Rudd, Pauline M.

AU - Smith, David F.

AU - Struwe, Weston B.

AU - Tiemeyer, Michael

AU - Wells, Lance

AU - Zaia, Joseph

AU - Kettner, Carsten

N1 - Copyright 2014 the author(s). First published in Glycobiology, 24(5), pp. 402-406. The original publication is available at http://www.doi.org/10.1093/glycob/cwu018, published by Oxford University Press. Version archived for private and non-commercial use with the permission of the author/s and according to publisher conditions. For further rights please contact the publisher.

PY - 2014/5

Y1 - 2014/5

N2 - The MIRAGE (minimum information required for a glycomics experiment) initiative was founded in Seattle, WA, in November 2011 in order to develop guidelines for reporting the qualitative and quantitative results obtained by diverse types of glycomics analyses, including the conditions and techniques that were applied to prepare the glycans for analysis and generate the primary data along with the tools and parameters that were used to process and annotate this data. These guidelines must address a broad range of issues, as glycomics data are inherently complex and are generated using diverse methods, including mass spectrometry (MS), chromatography, glycan array-binding assays, nuclear magnetic resonance (NMR) and other rapidly developing technologies. The acceptance of these guidelines by scientists conducting research on biological systems in which glycans have a significant role will facilitate the evaluation and reproduction of glycomics experiments and data that is reported in scientific journals and uploaded to glycomics databases. As a first step, MIRAGE guidelines for glycan analysis by MS have been recently published (Kolarich D, Rapp E, Struwe WB, Haslam SM, Zaia J., et al. 2013. The minimum information required for a glycomics experiment (MIRAGE) project-Improving the standards for reporting mass spectrometry-based glycoanalytic data. Mol. Cell Proteomics. 12:991-995), allowing them to be implemented and evaluated in the context of real-world glycobiology research. In this paper, we set out the historical context, organization structure and overarching objectives of the MIRAGE initiative.

AB - The MIRAGE (minimum information required for a glycomics experiment) initiative was founded in Seattle, WA, in November 2011 in order to develop guidelines for reporting the qualitative and quantitative results obtained by diverse types of glycomics analyses, including the conditions and techniques that were applied to prepare the glycans for analysis and generate the primary data along with the tools and parameters that were used to process and annotate this data. These guidelines must address a broad range of issues, as glycomics data are inherently complex and are generated using diverse methods, including mass spectrometry (MS), chromatography, glycan array-binding assays, nuclear magnetic resonance (NMR) and other rapidly developing technologies. The acceptance of these guidelines by scientists conducting research on biological systems in which glycans have a significant role will facilitate the evaluation and reproduction of glycomics experiments and data that is reported in scientific journals and uploaded to glycomics databases. As a first step, MIRAGE guidelines for glycan analysis by MS have been recently published (Kolarich D, Rapp E, Struwe WB, Haslam SM, Zaia J., et al. 2013. The minimum information required for a glycomics experiment (MIRAGE) project-Improving the standards for reporting mass spectrometry-based glycoanalytic data. Mol. Cell Proteomics. 12:991-995), allowing them to be implemented and evaluated in the context of real-world glycobiology research. In this paper, we set out the historical context, organization structure and overarching objectives of the MIRAGE initiative.

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U2 - 10.1093/glycob/cwu018

DO - 10.1093/glycob/cwu018

M3 - Article

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AN - SCOPUS:84898720527

SN - 0959-6658

VL - 24

SP - 402

EP - 406

JO - Glycobiology

JF - Glycobiology

IS - 5

ER -

MIRAGE: the minimum information required for a glycomics experiment

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