TY - JOUR
T1 - Multiple sclerosis lesion segmentation
T2 - revisiting weighting mechanisms for federated learning
AU - Liu, Dongnan
AU - Cabezas, Mariano
AU - Wang, Dongang
AU - Tang, Zihao
AU - Bai, Lei
AU - Zhan, Geng
AU - Luo, Yuling
AU - Kyle, Kain
AU - Ly, Linda
AU - Yu, James
AU - Shieh, Chun-Chien
AU - Nguyen, Aria
AU - Kandasamy Karuppiah, Ettikan
AU - Sullivan, Ryan
AU - Calamante, Fernando
AU - Barnett, Michael
AU - Ouyang, Wanli
AU - Cai, Weidong
AU - Wang, Chenyu
N1 - Copyright the Author(s) 2023. Version archived for private and non-commercial use with the permission of the author/s and according to publisher conditions. For further rights please contact the publisher.
PY - 2023
Y1 - 2023
N2 - Background and introduction: Federated learning (FL) has been widely employed for medical image analysis to facilitate multi-client collaborative learning without sharing raw data. Despite great success, FL's applications remain suboptimal in neuroimage analysis tasks such as lesion segmentation in multiple sclerosis (MS), due to variance in lesion characteristics imparted by different scanners and acquisition parameters. Methods: In this work, we propose the first FL MS lesion segmentation framework via two effective re-weighting mechanisms. Specifically, a learnable weight is assigned to each local node during the aggregation process, based on its segmentation performance. In addition, the segmentation loss function in each client is also re-weighted according to the lesion volume for the data during training. Results: The proposed method has been validated on two FL MS segmentation scenarios using public and clinical datasets. Specifically, the case-wise and voxel-wise Dice score of the proposed method under the first public dataset is 65.20 and 74.30, respectively. On the second in-house dataset, the case-wise and voxel-wise Dice score is 53.66, and 62.31, respectively. Discussions and conclusions: The Comparison experiments on two FL MS segmentation scenarios using public and clinical datasets have demonstrated the effectiveness of the proposed method by significantly outperforming other FL methods. Furthermore, the segmentation performance of FL incorporating our proposed aggregation mechanism can achieve comparable performance to that from centralized training with all the raw data.
AB - Background and introduction: Federated learning (FL) has been widely employed for medical image analysis to facilitate multi-client collaborative learning without sharing raw data. Despite great success, FL's applications remain suboptimal in neuroimage analysis tasks such as lesion segmentation in multiple sclerosis (MS), due to variance in lesion characteristics imparted by different scanners and acquisition parameters. Methods: In this work, we propose the first FL MS lesion segmentation framework via two effective re-weighting mechanisms. Specifically, a learnable weight is assigned to each local node during the aggregation process, based on its segmentation performance. In addition, the segmentation loss function in each client is also re-weighted according to the lesion volume for the data during training. Results: The proposed method has been validated on two FL MS segmentation scenarios using public and clinical datasets. Specifically, the case-wise and voxel-wise Dice score of the proposed method under the first public dataset is 65.20 and 74.30, respectively. On the second in-house dataset, the case-wise and voxel-wise Dice score is 53.66, and 62.31, respectively. Discussions and conclusions: The Comparison experiments on two FL MS segmentation scenarios using public and clinical datasets have demonstrated the effectiveness of the proposed method by significantly outperforming other FL methods. Furthermore, the segmentation performance of FL incorporating our proposed aggregation mechanism can achieve comparable performance to that from centralized training with all the raw data.
KW - deep learning
KW - federated learning
KW - MRI
KW - multiple sclerosis
KW - segmentation
UR - http://www.scopus.com/inward/record.url?scp=85161084314&partnerID=8YFLogxK
U2 - 10.3389/fnins.2023.1167612
DO - 10.3389/fnins.2023.1167612
M3 - Article
C2 - 37274196
AN - SCOPUS:85161084314
SN - 1662-4548
VL - 17
SP - 1
EP - 13
JO - Frontiers in Neuroscience
JF - Frontiers in Neuroscience
M1 - 1167612
ER -